cluster # 11276

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 11276 cluster # 11276 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11276#0 length = 1985 sequences # 6

consensus_11276#1 length = 608 sequences # 1
consensus_11276#2 length = 442 sequences # 1

consensusID : consensus_11276#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1985
fasta sequence

                              [TGCTCATTGCATTATTCTTGTTAGACAGTCGTTGACCCTAAATGAACTAATTCTGCAATCTGCATTCATGACAGATTGCAACTCCATGGGTTTCTAAAATATTTTGGGCTTAGCTTATTTTGGAGCTTCTTCCAATGGTTCTACACGGGAGGCAATGCCTGTGGATTTGTTCAGTTCCCTACTTTTGGTCTGAAAGCCTGGAAACAATCATTCTTCTTTGATTTTAGCCTCACATATGTTGGTGCGGGGATGATTTGCTCACACCTTGTGAACCTCTCTACCCTCCTTGGTGCGGTCATTTCATGGGGAATAATGTGGCCACTTATCAGCAAACATAAGGGGGACTGGTACCCTGCAAACATACCTGAAAGCAGCATGACAAGTTTGTATGGTTACAAGGTCTCATATTTTCTCAATGCTTAATGTAAAAGCAGATACTACTTACAAAACCATCAGATAACTTATGTAAATTGCTCCTTTTGCAGTCGTTTTTATGCATTGCTCTGATTATGGGGGATGGCCTGTACCATTTTGTTAAAGTTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACACAGGTGAGAAAATGAAACCATTGCAAATTCAACTACATGGAAATGGAATGCCTCTCACACTCTTCCATCACCTTAATTTTCACATACTCATAACACTGTTAATGATGGCTAAATGAAATGAATTGCAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGGCAAGGACAATGGCGTCATAGCCGGCCTTGTGGTT-GGCACCCTGGTGAAGCAGCTGGTGCTCGTCTCTGCCGATCTGATGCACGATCTCAAGACGGGACATCTCACCTTGACATCGCCGAGGTCCATGCTCG-TGGGAGAGCTCATCGGGACAGGCATTGGCTGCTTCATCGCGCCACTGACGTTCATGCTGTTCTACAGGGCGTTTGACATCGGGAACCCCGATGGCTACTGGAAGGCGCCATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCCCAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTG-CCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAG-CCACCGATCTG-CATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTT-CATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGAATTGTTTAGTTTGGCATACATAAAATATGTTATAACTTTTTTTACTCACATGTATAGGATTGATGACTACTACACTGTAATCTCAACTAAGGTTGTGTTCGAGTATCAATTATTATAATCTTTAAAATAAATTTGTTTAAAAA]

[+] EMBL AK063464             [TGCTCATTGCATTATTCTTGTTAGACAGTCGTTGACCCTAAATGAACTAATTCTGCAATCTGCATTCATGACAGATTGCAACTCCATGGGTTTCTAAAATATTTTGGGCTTAGCTTATTTTGGAGCTTCTTCCAATGGTTCTACACGGGAGGCAATGCCTGTGGATTTGTTCAGTTCCCTACTTTTGGTCTGAAAGCCTGGAAACAATCATTCTTCTTTGATTTTAGCCTCACATATGTTGGTGCGGGGATGATTTGCTCACACCTTGTGAACCTCTCTACCCTCCTTGGTGCGGTCATTTCATGGGGAATAATGTGGCCACTTATCAGCAAACATAAGGGGGACTGGTACCCTGCAAACATACCTGAAAGCAGCATGACAAGTTTGTATGGTTACAAGGTCTCATATTTTCTCAATGCTTAATGTAAAAGCAGATACTACTTACAAAACCATCAGATAACTTATGTAAATTGCTCCTTTTGCAGTCGTTTTTATGCATTGCTCTGATTATGGGGGATGGCCTGTACCATTTTGTTAAAGTTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACACAGGTGAGAAAATGAAACCATTGCAAATTCAACTACATGGAAATGGAATGCCTCTCACACTCTTCCATCACCTTAATTTTCACATACTCATAACACTGTTAATGATGGCTAAATGAAATGAATTGCAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGGCAAGGACAATGGCGTCATAGCCGGCCTTGTGGTT GGCACCCTGGTGAAGCAGCTGGTGCTCGTCTCTGCCGATCTGATGCACGATCTCAAGACGGGACATCTCACCTTGACATCGCCGAGGTCCATGCTCG TGGGAGAGCTCATCGGGACAGGCATTGGCTGCTTCATCGCGCCACTGACGTTCATGCTGTTCTACAGGGCGTTTGACATCGGGAACCCCGATGGCTACTGGAAGGCGCCATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCCCAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTG CCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAG CCACCGATCTG CATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTT CATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGAATTGTTT                                                                                                                                        ]
[+] EMBL OSR23381A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGGCAAGGACAATGGCGTCATAGCCGGCCTTGTGGTT GGCACCCTGGTGAAGCAGCTGGTGCTCGTCTCTGCCGATCTGATGCACGATCTCAAGACGGGACATNTCAACTTGACATCGNCGAGGTCCATGCTCGTTGGGA AGCTCATCGGGACAGGCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OSR23701A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGGCAAGGACAATGGCGTCATAGCCGGNCTTGTGGTTNGGCACCCTGGTGAAGCAGCTGGTGCTCGTCTCTNCCGATCTGATGCACGATCTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU184448             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGTGCTCACGAACGTGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTG CCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAG CCACCGATCTG CATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTT CATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAAaaa                                                                                                                                                                                                 ]
[+] EMBL AU031880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TAGGGGCGA NTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTNCCTTCATGGTN CCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAG CCACCGATCTG CATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTT CATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAAaaa                                                                                                                                                                                                 ]
[+] EMBL AU082716             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCGTCGGGAGCCTGGTGCTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAGCCCACCGATCTGCCATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTTCCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGAATTGTTTAGTTTGGCATACATAAAATATGTTATAACTTTTTTTACTCACATGTATAGGATTGATGACTACTACACTGTAATCTCAACTAAGGTTGTGTTCGAGTATCAATTATTATAATCTTTAAAATAAATTTGTTTAAAAA]




>consensus_11276#0
TGCTCATTGCATTATTCTTGTTAGACAGTCGTTGACCCTAAATGAACTAATTCTGCAATC
TGCATTCATGACAGATTGCAACTCCATGGGTTTCTAAAATATTTTGGGCTTAGCTTATTT
TGGAGCTTCTTCCAATGGTTCTACACGGGAGGCAATGCCTGTGGATTTGTTCAGTTCCCT
ACTTTTGGTCTGAAAGCCTGGAAACAATCATTCTTCTTTGATTTTAGCCTCACATATGTT
GGTGCGGGGATGATTTGCTCACACCTTGTGAACCTCTCTACCCTCCTTGGTGCGGTCATT
TCATGGGGAATAATGTGGCCACTTATCAGCAAACATAAGGGGGACTGGTACCCTGCAAAC
ATACCTGAAAGCAGCATGACAAGTTTGTATGGTTACAAGGTCTCATATTTTCTCAATGCT
TAATGTAAAAGCAGATACTACTTACAAAACCATCAGATAACTTATGTAAATTGCTCCTTT
TGCAGTCGTTTTTATGCATTGCTCTGATTATGGGGGATGGCCTGTACCATTTTGTTAAAG
TTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACA
CAGGTGAGAAAATGAAACCATTGCAAATTCAACTACATGGAAATGGAATGCCTCTCACAC
TCTTCCATCACCTTAATTTTCACATACTCATAACACTGTTAATGATGGCTAAATGAAATG
AATTGCAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGT
ATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCAT
CATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCAT
AGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGA
CATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGG
CAAGGACAATGGCGTCATAGCCGGCCTTGTGGTTGGCACCCTGGTGAAGCAGCTGGTGCT
CGTCTCTGCCGATCTGATGCACGATCTCAAGACGGGACATCTCACCTTGACATCGCCGAG
GTCCATGCTCGTGGGAGAGCTCATCGGGACAGGCATTGGCTGCTTCATCGCGCCACTGAC
GTTCATGCTGTTCTACAGGGCGTTTGACATCGGGAACCCCGATGGCTACTGGAAGGCGCC
ATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCC
CAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGC
GAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGT
GCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTT
TGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGG
GCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGAT
TAAGCCACCGATCTGCATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATT
TCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGT
TGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCG
AATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGAATTGTTTAGTTTGGCATA
CATAAAATATGTTATAACTTTTTTTACTCACATGTATAGGATTGATGACTACTACACTGT
AATCTCAACTAAGGTTGTGTTCGAGTATCAATTATTATAATCTTTAAAATAAATTTGTTT
AAAAA

consensusID : consensus_11276#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [CGCCATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCCCAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGGTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAGCCACCGATCTGCATGAAATTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTTCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTNNNANNNANNNNNNNNNNNNNNAAAAAAACTGGAGGGGGG]

[+] EMBL CA758396             [CGCCATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCCCAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGGTGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGATTAAGCCACCGATCTGCATGAAATTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATTTCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCTATCGAATTAGCTGTGTTTGTACACTTGTNNNANNNANNNNNNNNNNNNNNAAAAAAACTGGAGGGGGG]




>consensus_11276#1
CGCCATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGC
TGCCCAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACG
TGGCGAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGG
CCGTGCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGG
TGTTTGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGT
CTGGGCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTA
AGATTAAGCCACCGATCTGCATGAAATTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTT
AATTTCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTT
TGGTTGTAGTGAGCTGCTGTTTGCCTATGATCCAAGTCATGTTTGTGTTTTAATTTACCT
ATCGAATTAGCTGTGTTTGTACACTTGTNNNANNNANNNNNNNNNNNNNNAAAAAAACTG
GAGGGGGG

consensusID : consensus_11276#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CATTTTGTTAAAGTTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACACAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCCTGGGCTGGCAAGGACAATGGCGTAATAGCCGGCCTTGTGGTTGGCANCCCTGGTGAAGCAGCTGGTGCCCGTCTCTNCCGAT]

[+] EMBL AU032408             [CATTTTGTTAAAGTTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACACAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCCTGGGCTGGCAAGGACAATGGCGTAATAGCCGGCCTTGTGGTTGGCANCCCTGGTGAAGCAGCTGGTGCCCGTCTCTNCCGAT]




>consensus_11276#2
CATTTTGTTAAAGTTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAA
AGTGTTAGCAACACAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGT
GATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTG
CTAAGCATCATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTAC
GTGATCATAGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGG
CTCACGGACATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCC
TGGGCTGGCAAGGACAATGGCGTAATAGCCGGCCTTGTGGTTGGCANCCCTGGTGAAGCA
GCTGGTGCCCGTCTCTNCCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11276#0      TGCTCATTGCATTATTCTTGTTAGACAGTCGTTGACCCTAAATGAACTAATTCTGCAATC 60
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TGCATTCATGACAGATTGCAACTCCATGGGTTTCTAAAATATTTTGGGCTTAGCTTATTT 120
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TGGAGCTTCTTCCAATGGTTCTACACGGGAGGCAATGCCTGTGGATTTGTTCAGTTCCCT 180
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      ACTTTTGGTCTGAAAGCCTGGAAACAATCATTCTTCTTTGATTTTAGCCTCACATATGTT 240
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      GGTGCGGGGATGATTTGCTCACACCTTGTGAACCTCTCTACCCTCCTTGGTGCGGTCATT 300
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TCATGGGGAATAATGTGGCCACTTATCAGCAAACATAAGGGGGACTGGTACCCTGCAAAC 360
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      ATACCTGAAAGCAGCATGACAAGTTTGTATGGTTACAAGGTCTCATATTTTCTCAATGCT 420
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TAATGTAAAAGCAGATACTACTTACAAAACCATCAGATAACTTATGTAAATTGCTCCTTT 480
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TGCAGTCGTTTTTATGCATTGCTCTGATTATGGGGGATGGCCTGTACCATTTTGTTAAAG 540
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TTACCGGTGTCACTGCTAAGAGTTTACATAATAGATTTAACCGAAAAAGTGTTAGCAACA 600
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CAGGTGAGAAAATGAAACCATTGCAAATTCAACTACATGGAAATGGAATGCCTCTCACAC 660
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      TCTTCCATCACCTTAATTTTCACATACTCATAACACTGTTAATGATGGCTAAATGAAATG 720
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      AATTGCAGCATCAGAGGAGGGTGATATGGTTTCATTAGATGATCTACAACGTGATGAGGT 780
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      ATTCAAGAGGGGTACTGTCCCTTCTTGGATGGCATACAGTGGTTACTTCTTGCTAAGCAT 840
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CATTGCGGTAATCACCATACCGATAATGTTTCGACAAGTGAAGTGGTACTACGTGATCAT 900
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      AGCCTACGCGCTCGGCCCGGTGCTAGGATTCGCCAATTCCTACGGAGCAGGGCTCACGGA 960
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CATCAACATGGGGTACAACTACGGCAAGATCGCTCTCTTCGTCTTTGCAGCTTGGGCTGG 1020
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CAAGGACAATGGCGTCATAGCCGGCCTTGTGGTTGGCACCCTGGTGAAGCAGCTGGTGCT 1080
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CGTCTCTGCCGATCTGATGCACGATCTCAAGACGGGACATCTCACCTTGACATCGCCGAG 1140
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      GTCCATGCTCGTGGGAGAGCTCATCGGGACAGGCATTGGCTGCTTCATCGCGCCACTGAC 1200
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      GTTCATGCTGTTCTACAGGGCGTTTGACATCGGGAACCCCGATGGCTACTGGAAGGCGCC 1260
consensus_11276#1      --------------------------------------------------------CGCC 4
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      ATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCC 1320
consensus_11276#1      ATACGCGCTGATCTACCGCAACATGGCGATCCTCGGGATCGAGGGCATCTCGGCGCTGCC 64
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGC 1380
consensus_11276#1      CAAGCACTGCCTCTCGCTCTCCGTCGGGTTCTTCGCGTTCGCCGTGCTCACGAACGTGGC 124
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      GAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGT 1440
consensus_11276#1      GAGGGACGCCCTGCCGGCGAGGTACAAGAAGCTCGTGCCGCTGCCGACGGCGATGGCCGT 184
consensus_11276#2      --------------CATTTTGTTA-AAGTTACCGGTGTCACTGCTAAGAGTTTACATAAT 45
                                     *     * ** ***   *  *** * ****  *  *         *

consensus_11276#0      GCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGCTGTT 1500
consensus_11276#1      GCCGTTCCTCGTAGGGGCGAGCTTCGCCATCGACATGTGCGTCGGGAGCCTGGTGGTGTT 244
consensus_11276#2      AGATTTAACCGAAAAAG-------TGTTAGCAACACA-GCATCAGAGGAG-GGTGATATG 96
                           **   ** *   *        *  * * ***   ** ** *  *   **** * * 

consensus_11276#0      TGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGG 1560
consensus_11276#1      TGCTTGGAACAAGATGAACAAGAAGGAGGCTGCCTTCATGGTGCCTGCTGTTGCGTCTGG 304
consensus_11276#2      GTTTCATTAGATGATCTACAACGTG-ATGAGGTATTCAAGAGGGGTACTGTCCCTTCTTG 155
                          *    * * ***  ****   * * *  *  **** *  *  * ****  * *** *

consensus_11276#0      GCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGAT 1620
consensus_11276#1      GCTCATGTGTGGCGATGGCATTTGGACCTTCCCTTCTTCTATCCTTGCTCTCGCTAAGAT 364
consensus_11276#2      GATGGCATACAGTGGTTACTTCTTGCTAAGCATCATTGCGGTAATCAC-CATACCGATAA 214
                       * *    *   * * *  * * * *     *     * *  *  *  * *   *  * * 

consensus_11276#0      TAAGCCACCGATCTGCATGAAGTTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATT 1680
consensus_11276#1      TAAGCCACCGATCTGCATGAAATTTACGCCTGGAAGCTAAGAGGTGTAGTGTGTTTAATT 424
consensus_11276#2      TGTTTCGACAAGTGAAGTGGTACT-ACGT---GATCATAGCCTACGCGCTCGGCCCGGTG 270
                       *    *  * *      **    * ***    **   **      *   *  *     * 

consensus_11276#0      TCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGT 1740
consensus_11276#1      TCATGGGTGGAGGATTGCAGAAATAAACAGTGATGATTAACTGTAAATGTGTCTTTTGGT 484
consensus_11276#2      CTAGGATTCGCCAATTCCT--ACGGAGCAGGGCTCACGGAC-ATCAACATGGGGTACAAC 327
                         * *  * *   *** *   *   * *** * * *   **  * **  **   *     

consensus_11276#0      TGTAGTGAGCTG---CTGTTTGCCTATG-ATCCAAGTCATGTTTGTGTTTTAATTTACCT 1796
consensus_11276#1      TGTAGTGAGCTG---CTGTTTGCCTATG-ATCCAAGTCATGTTTGTGTTTTAATTTACCT 540
consensus_11276#2      TACGGCAAGATCGCTCTCTTCGTCTTTGCAGCCTGGGCTGGCAAGGACAATGGCGTAATA 387
                       *   *  ** *    ** ** * ** ** * **  * *  *   *     *    **   

consensus_11276#0      ATCGAATTAGCTGTGTTTGTACACTTGTACATTTTATAACTTGAGAATTGTTTAGTTTGG 1856
consensus_11276#1      ATCGAATTAGCTGTGTTTGTACACTTGTNNNANNNANNNNNNNNNNNNNNAAAAAAACTG 600
consensus_11276#2      GCCGGCCTTGTGG--TTGGCANCCCTGGTGAAGCAGCTGGTGCCCGTCTCTNCCGAT--- 442
                         **   * *  *  ** * *  * **                                 

consensus_11276#0      CATACATAAAATATGTTATAACTTTTTTTACTCACATGTATAGGATTGATGACTACTACA 1916
consensus_11276#1      GAGGGGGG---------------------------------------------------- 608
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      CTGTAATCTCAACTAAGGTTGTGTTCGAGTATCAATTATTATAATCTTTAAAATAAATTT 1976
consensus_11276#1      ------------------------------------------------------------
consensus_11276#2      ------------------------------------------------------------
                                                                                   

consensus_11276#0      GTTTAAAAA 1985
consensus_11276#1      ---------
consensus_11276#2      ---------