These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11281#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1336 fasta sequence [AATTCTGTATTCTTTTTTCTTCCGATCATATACACATTTGTTGGAACATCAACAAACAAAATGTTGGGAATAGCAGTATATCAAAACCTCACAGCTCAATATCTGAGCTAACCTATCCGATTGTATAAATTACTCCCGCCCACGCCTTTTTACAATATAAACCTAATCCACAGACTAATCATGGAAACAAACCAACCAGAGTGCTCAACATTACCAGGACAAGCAATGAATGAAATAAATGATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAG-AAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCACCTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGTGACCTCCATGAGCTGCCGCGAGCAGCGCTCAATCTGGTGGATCTCCTTGAGCAGGCCGCATGAGTGCTTGCGGTCCTTCTTCTTGGACTCGTCGAGGATGCGGTCGAAGAGTGTGATGAGGGGGCCAGCCCAGGGGAAGGTCCTGGGCA-CCGCTGTGAGGTGCGCCTGGAGGCCGC-GTCCTGGCATGGGATTGCTGCC-CGAGCGCCCAGGTGACGACGAACAGCACGGCGCCCATGGGGTAGACGGCGGAGGCGAGGCCTCCGGTGGCGGCGATGTCGTTCGCGCGGGGCACCGTGAGGCCTCCCC-CGATGGCCTGCAGCTGGCGCGCGGCGGACCATGTGCGGGAGACGATGCGGGAGAGTGACCTGAGATGGGAGCCAGAGCCGGACCCGGAGCTCCCGCCGCTGCTGCTCCGGCGGTGGTGGCCGTGGCCGTGGGGAAGGGAGTCCCGAGTAGTACCGGCGCGGCCGAAGGAGCGGTTGCGCTGTCCGACGACTCCCCCAGCGTCCTNGTCGTCGAGCATGAGGATGGTGAGATCGGTGAGGGCCTTGCGGGCGCGGCGGATCTGGGCCTCTCCTCGCTGCGCGGCGGGGGCGGGGGCGAGAGCGGCGGCGGCGATGGCGAGGTGCTTGCGCCACTGGCGGATGAGGTCGAGGCCGTCGCGGAGGGCGTTGCAGAGAT] [+] EMBL CB661833 [AATTCTGTATTCTTTTTTCTTCCGATCATATACACATTTGTTGGAACATCAACAAACAAAATGTTGGGAATAGCAGTATATCAAAACCTCACAGCTCAATATCTGAGCTAACCTATCCGATTGTATAAATTACTCCCGCCCACGCCTTTTTACAATATAAACCTAATCCACAGACTAATCATGGAAACAAACCAACCAGAGTGCTCAACATTACCAGGACAAGCAATGAATGAAATAAATGATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAG AAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCACCTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGTGACCTCCATGAGCTGCCGCGAGCAGCGCTCAATCTGGTGGATCTCCTTGAGCAGGCCGCATGAGTGCTTGCGGTCCTTCTTCTTGGACTCGTCGAGGATGCGGTCG ] [+] EMBL CB661835 [ nTATATCAAAACCTCTCCCCTCAATATCTGAGCTAACCTATCCGATTGTATAAATTACTCCCGCCCACGCCTTTTTACAATATAAACCTAATCCACAGACTAATCATGGAAACAAACCAACCAGAGTGCTCAACATTACCAGGACAAGCAATGAATGAAATAAATGATATTACACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAG AAATAAAATGAAAGAAATAACTCAAATGTATCCTAACTAGGGgg ] [+] EMBL CA752671 [ gggttttTGAATGNGGTAAATGATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAGAAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCACCTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGTGACCTCCATGAGCTGCCGCGAGCAGCGCTCAATCTGGTGGATCTCCTTGAGCAGGCCGCATGAGTGCTTGCGGTCCTTCTTCTTGGACTCGTCGAGGATGCGGTCGAAGAGTGTGATGAGGGGGCCAGCCCAAGGGAAGGTCCTGGGCACCCGTTGTGAGGTGCGCCTGGAGGCCGC GTCCTGGCATTGGATTGCTGCC CNAGCG ] [+] EMBL CA752713 [ gggttttTGAATGAAATAAATGATATTAG GGATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAGAAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCACCTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGTGACCT CATGAGCTGCCGCGAGCAGCGCTCAATCTGGTGGATCT CTTGAGCA GCCGCATGA ] [-] EMBL CB661834 [ TATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCGGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCGCCTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGTGACCTCCATGAGCTGCCGTGAGCAGCGCTCAATCTGGTGGATCTCCTTGAGCAGTCCGCATGAGTGCTTGCGGTCCTTCTTCTTGGACTCGTCGAGGATGCGGTCGAAGAGTGTGATGAGGGGGCCAGCCCAGGGGAAGGTCCTGGGCA CCGCTGTGAGGTGCGCCTGGAGGCCGCGGTCCTGGCATGGGATTGCTGCCACGAGCGCCCAGGTGACGACGAACAGCACGGCGCCCATGGGGTAGACGGCGGAGGCGAGGCCTCCGGTGGCGGCGATGTCGTTCGCGCGGGGCACCGTGAGGCCTCCCC CGATGGCCTGCAGCTGGCGCGCGGCGGACCATGTGCGGGAGACGATGCGGGAGAG ] [-] EMBL CA758405 [ TCTTCTTGGACTCGTCGAGGATGCGGTCGAAGAGTGTGATGAGGGGGCCAGCCCAGGGGAAGGTCCTGGGCA CCGCTGTGAGGTGCGCCTGGAGGCCGCGGTCCTGGCATGGGATTGCTGCCACGAGCGCCCAGGTGACGACGAACAGCACGGCGCCCATGGCGTAGACGGCGGAGGCGAGGCCTCCGGTGGCGGCGATGTCGTTCGCGCGGGGCACCGTGAGGCCTCCCCNCGATGGCCTGCAGCTGGCGCGCGGCGGACCATGTGCGGGAGACGCTCCAGGAGAGTGACCTGAGATGGGAGCCAGAGCCGGACCCGGAGCTCCCGCCGCTGCTGCTCCGGCGGTGGTGGCCGTGGCCGTGGGGAAGGGAGTCCCGAGTAGTACCGGCGCGGCCGAAGGAGCGGTTGCGCTGTCCGACGACTCCCCCAGCGTCCTNGTCGTCGAGCATGAGGATGGTGAGATCGGTGAGGGCCTTGCGGGCGCGGCGGATCTGGGCCTCTCCTCGCTGCGCGGCGGGGGCGGGGGCGAGAGCGGCGGCGGCGATGGCGAGGTGCTTGCGCCACTGGCGGATGAGGTCGAGGCCGTCGCGGAGGGCGTTGCAGAGAT] consensusID : consensus_11281#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [TTTTTTTTTTTTTTTGAATGAAATAAATGATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAGAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATNTCCCGCACCTGGCGCTCAANAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGG] [-] EMBL AU092677 [TTTTTTTTTTTTTTTGAATGAAATAAATGATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAGAGAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCATGCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAAGCTACCTCGGTGGAGCGGCTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTCACCCGGCGTTGTGCGGCCTACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATNTCCCGCACCTGGCGCTCAANAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTGCGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGG] consensusID : consensus_11281#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence [GGGGCCAGCCCAGGGGAAGNTCCTGGGCACCGCTGTNAGGTNCGCCTGGAGGCCGCGGTCCTGGCATGGGATTGCTGCCACGAGCGCCCAGGTGACNACGAACAGCACGGCGCGGTCGAGGAAGTCGAGGAGGAGGCGGTCGAGCGGGGGGCGGGAGAGGGGCTGGGAGTCAGCGAGGGCGAAGAGGATAGCGCGGAACTCCTCGAGGCAGATGAGGAAGGAGTCGAGGAGGCGGCGCGTCCAAGCGAGGGAGAGGAGGTCCGGGGCGGA] [-] EMBL C27778 [GGGGCCAGCCCAGGGGAAGNTCCTGGGCACCGCTGTNAGGTNCGCCTGGAGGCCGCGGTCCTGGCATGGGATTGCTGCCACGAGCGCCCAGGTGACNACGAACAGCACGGCGCGGTCGAGGAAGTCGAGGAGGAGGCGGTCGAGCGGGGGGCGGGAGAGGGGCTGGGAGTCAGCGAGGGCGAAGAGGATAGCGCGGAACTCCTCGAGGCAGATGAGGAAGGAGTCGAGGAGGCGGCGCGTCCAAGCGAGGGAGAGGAGGTCCGGGGCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11281#0 AATTCTGTATTCTTTTTTCTTCCGATCATATACACATTTGTTGGAACATCAACAAACAAA 60 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 ATGTTGGGAATAGCAGTATATCAAAACCTCACAGCTCAATATCTGAGCTAACCTATCCGA 120 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 TTGTATAAATTACTCCCGCCCACGCCTTTTTACAATATAAACCTAATCCACAGACTAATC 180 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 ATGGAAACAAACCAACCAGAGTGCTCAACATTACCAGGACAAGCAATGAATGAAATAAAT 240 consensus_11281#1 --------------------------------TTTTTTTTTTTTTTTGAATGAAATAAAT 28 consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 GATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAG 300 consensus_11281#1 GATATTAGACCATTAGTACGAAGAACTGCTCAAGTAAGGATTCACAAGCTACAAAAGGAG 88 consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 AGAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCAT- 359 consensus_11281#1 AGAAAAAAAATGAAAGAAATAACTCAAATGTATCATAACTAAGGCCAGGCCTTCTTCAT- 147 consensus_11281#2 -----------------------------GGGGCCAGCCCAGGGGAAGNTCCTGGGCACC 31 * * * * ** ** * * ** consensus_11281#0 GCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAA--GCTACCTCGGTGGAGCGG 417 consensus_11281#1 GCAGAGACATGTATATGTAGATGCTAACTTTTACAGAGAA--GCTACCTCGGTGGAGCGG 205 consensus_11281#2 GCTGTNAGGTNCGCCTGGAGGCCGCGGTCCTGGCATGGGATTGCTGCCACGAGCGCCCAG 91 ** * * * ** ** * ** * * *** ** ** * * * consensus_11281#0 CTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTC-ACCCGGCG-TTGTGCGGCCT 475 consensus_11281#1 CTGCATTTCACACAAAGTTGGATCAAGCAATGAGTCCTC-ACCCGGCG-TTGTGCGGCCT 263 consensus_11281#2 GTG-ACNACGAACAGCACGGCGCGGTCGAGGAAGTCGAGGAGGAGGCGGTCGAGCGGGGG 150 ** * * *** * * **** * **** * * **** consensus_11281#0 ACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATCTCCCGCAC 535 consensus_11281#1 ACTGAGGTAGTCGAGGATTTCTGTCCGGGTGCGCACAACCCTGTGGAACATNTCCCGCAC 323 consensus_11281#2 GCGGGAGAGGGGCTGGGAGTCAGCGAGGGCGAAGAGGATAGCGCGGAAC--TCCTCGAGG 208 * * * * ** ** * *** * * * * ***** * ** consensus_11281#0 CTGGCGCTCAAGAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTG 595 consensus_11281#1 CTGGCGCTCAANAGGGTCCAGCCCATCCTTGAGTGACCCGCAAACTTGCACCAGCTCCTG 383 consensus_11281#2 CAGATGAGGAAG-GAGTCGAGGAGG---CGGCGCGTCCAAGCGAGGGAGAGGAGGTCCGG 264 * * * ** * *** ** * * * ** * * ** *** * consensus_11281#0 CGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGGAACTCCGCAGCATCAGT 655 consensus_11281#1 CGTGGCCTCCTGCACCTCGGAATCCTTGTCGTCGGCCAAGGGG----------------- 426 consensus_11281#2 GGCGGA------------------------------------------------------ 270 * ** consensus_11281#0 GACCTCCATGAGCTGCCGCGAGCAGCGCTCAATCTGGTGGATCTCCTTGAGCAGGCCGCA 715 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 TGAGTGCTTGCGGTCCTTCTTCTTGGACTCGTCGAGGATGCGGTCGAAGAGTGTGATGAG 775 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 GGGGCCAGCCCAGGGGAAGGTCCTGGGCACCGCTGTGAGGTGCGCCTGGAGGCCGCGTCC 835 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 TGGCATGGGATTGCTGCCCGAGCGCCCAGGTGACGACGAACAGCACGGCGCCCATGGGGT 895 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 AGACGGCGGAGGCGAGGCCTCCGGTGGCGGCGATGTCGTTCGCGCGGGGCACCGTGAGGC 955 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 CTCCCCCGATGGCCTGCAGCTGGCGCGCGGCGGACCATGTGCGGGAGACGATGCGGGAGA 1015 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 GTGACCTGAGATGGGAGCCAGAGCCGGACCCGGAGCTCCCGCCGCTGCTGCTCCGGCGGT 1075 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 GGTGGCCGTGGCCGTGGGGAAGGGAGTCCCGAGTAGTACCGGCGCGGCCGAAGGAGCGGT 1135 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 TGCGCTGTCCGACGACTCCCCCAGCGTCCTNGTCGTCGAGCATGAGGATGGTGAGATCGG 1195 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 TGAGGGCCTTGCGGGCGCGGCGGATCTGGGCCTCTCCTCGCTGCGCGGCGGGGGCGGGGG 1255 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 CGAGAGCGGCGGCGGCGATGGCGAGGTGCTTGCGCCACTGGCGGATGAGGTCGAGGCCGT 1315 consensus_11281#1 ------------------------------------------------------------ consensus_11281#2 ------------------------------------------------------------ consensus_11281#0 CGCGGAGGGCGTTGCAGAGAT 1336 consensus_11281#1 --------------------- consensus_11281#2 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||