These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11290#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1393 fasta sequence [GCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGATGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCGAGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGGGCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGCGTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGC-TGTCA-TGCTCGATGAAATCA-TAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATAGCTACAATGGATCGTTGCAAACAG-TCCACATG-AAAATGGAGCTTTGACATGACCAAATAAAGGTTCGA-TCCAAAGCTC-TGACG-CCCATTGTACATACAGAGAAGTCAGC-TTGCCGC-GGCAGCACTC-TGAGATTCAACCCT-AACAATGTTGGGCCCTAGC-AGTGTTTTA-GCTTCTAA--TTTCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAACGCACCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCCTTTTACCCTCTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTAAACCTGTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK101063 [GCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGATGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCGAGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGGGCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGCGTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGC TGTCA TGCTCGATGAAATCA TAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATAGCTACAATGGATCGTTGCAAACAG TCCACATG AAAATGGAGCTTTGACATGACCAAATAAAGGTTCGA TCCAAAGCTC TGACG CCCATTGTACATACAGAGAAGTCAGC TTGCCGC GGCAGCACTC TGAGATTCAACCCT AACAATGTTGGGCCCTAGC AGTGTTTTA GCTTCTAA TTTCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAACGCACCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCCTTTTACCCTCTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTT ] [+] EMBL AU069872 [ TTCCGGCAAGGGGAAGGCCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGAAGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGC GCGAGGCGACGGACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGCTGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGC TGTCA TGCTCGATGAAATCA TAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGCCCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCANCTCTTCCAATAGCTACAATGGATCGTTGCAAACAGTTCCACATGAAAAATGGAGCTTTGACATGACCAAATAAAGGTTCGATTCCAAAGCTCTTGACGNCCCATTGTACATACAGAGAAATCAGCNTTGCCGCGGGCAACACTCTTGAGATTCAACCCTAAAAAATTTTGGG CCTAACAAATGTTTTANCCTTCTAAANTTNCCCAac ] [+] EMBL AA753795 [ AAGGCTTGTCATTGCTCGATGAAATCAGTAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTTTCCATGAAGTTGGCCACTGTGAATCCCCAGCTGGACTTCAACA ] [+] EMBL AU183337 [ AGATCGCCACCTCTTCCAATAGCTACAATGGATCGTTGCAAACAG TCCACATG AAAATGGAGCTTTGACATGACCAAATAAAGGTTCGA TCCAAAGCTC TGACG CCCATTGTACATACAGAGAAGTCAGC TTGCCGC GGCAGCACTC TGAGATTCAACCCT AACAATGTTGGGCCCTAGC AGTGTTTTA GCTTCTAA TTTCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAACGCACCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCCTTTTACCCTCTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCaaaaaa ] [+] EMBL CA757892 [ AGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCCTTTTACCCTCTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTCTTCCTGTCAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11290#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence [AGACAAGGGGGAAGTTGGCCCTGTGAATCCCCAGCTGGACTTCAACANTTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCNGCCCGTTACAGAGCTCACATTTTCCACTANAGACCTNAGGTGCGCCGCTGCCCTACATTAACCAGCCTNAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGNATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATANCTACAATGGATCGTTGCAAACAGNCCACATGAAAATGGAGCTTTGACATGACCAAATAAAGGTTCGATCCAAAGCTCTGACGCCCATTGTACATACAGAGAAGNCAGCTTGCCGCGGCAGCACTCTGAGATTCAACCCTAACAATGTTGGGCCCTAGCAGTGTTTTAGCTTCTAATTNCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAAACGCACCATGTACGGTAGTCGNGTGTAGTATATATATGGATGCTACAAGGATCGTACNTAACTCGGNTGCAGTATATGATGCTTCATTCAGACCCTTTTACCTTNTAAGCAGGAGAGGGACGACGGGGAAAAACATTAATTGGAATTCNNATTATATTTGGAGCTGANATANANCTTTAAAACCC] [+] EMBL CA764937 [AGACAAGGGGGAAGTTGGCCCTGTGAATCCCCAGCTGGACTTCAACANTTTGCCTAACCTCCTTGCTAAAGATATGCACCAGTCATGCNGCCCGTTACAGAGCTCACATTTTCCACTANAGACCTNAGGTGCGCCGCTGCCCTACATTAACCAGCCTNAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGNATGGACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACCATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATGATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCAATANCTACAATGGATCGTTGCAAACAGNCCACATGAAAATGGAGCTTTGACATGACCAAATAAAGGTTCGATCCAAAGCTCTGACGCCCATTGTACATACAGAGAAGNCAGCTTGCCGCGGCAGCACTCTGAGATTCAACCCTAACAATGTTGGGCCCTAGCAGTGTTTTAGCTTCTAATTNCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAAACGCACCATGTACGGTAGTCGNGTGTAGTATATATATGGATGCTACAAGGATCGTACNTAACTCGGNTGCAGTATATGATGCTTCATTCAGACCCTTTTACCTTNTAAGCAGGAGAGGGACGACGGGGAAAAACATTAATTGGAATTCNNATTATATTTGGAGCTGANATANANCTTTAAAACCC] consensusID : consensus_11290#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GGCCCTAGCAGTGTTTTAGCTTCTAATTTCCCATCTTGGTGTAATGATTCTTTGAANAAAAATGAAACGCNCCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCNTTTTACCCTTTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTCTTCCTGTCCATGGATCGATCTCCTTAAGCTGAAATTATCCCCTTTTTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101327 [GGCCCTAGCAGTGTTTTAGCTTCTAATTTCCCATCTTGGTGTAATGATTCTTTGAANAAAAATGAAACGCNCCATGTACGGTAGTCGGGTGTAGTATATATATGTATGCTACAAGATCGTACATAAGTCGGGTGCAGTATATGATGCTTCATTCAGACCNTTTTACCCTTTCAAGCAGAGAGGGACGACGTGTAATATCATTATTTGTATTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTCTTCCTGTCCATGGATCGATCTCCTTAAGCTGAAATTATCCCCTTTTTTTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11290#0 GCGCCGGCCCGGCGCAATTCGGCCTCCCTGACGCCGGCGCGGCCGGCGCATCGAAGGAGA 60 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 TGGAGCTCGGGAACACCCGGGACGAGTCGTCGGTGTCTGATCCGGCGCCCGGCGGCGCCG 120 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 AGATTCCGCCCAAGGGGGCTTCCGACGGCAATGCACGGAAGCGGAAGGCCTCCGGGAAGG 180 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 GCAAAGGCAAGGACAGCCCCATGTCCACCTCCGCCGCCAAGGAGGATTCCAGCGGCAAGC 240 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 GTTGCAAATCGACGGAGGAGAGCAATGCGGCCGCCGAGGAGAATTCCGGCAAGGGGAAGG 300 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 CCGCGCAGAGCAACAGCGAGAATGGCGGCGGCAAGAAGCAAGGGAAGGACAGCTCGTCGA 360 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 AGCCCCCCGAGCCGCCCAAGGACTACATCCATGTCCGCGCCCGGCGCGGCGAGGCGACGG 420 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 ACAGCCACAGCCTCGCCGAGAGGGTGAGAAGAGAGAAGATAAGCCAGAGGATGAAGCTGC 480 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 TGCAGGATCTCGTGCCGGGTTGTAACAAGGTGGTTGGAAAGGCTGTCATGCTCGATGAAA 540 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 TCATAAACTATGTGCAGTCGTTGCAACGGCAAGTCGAGTTTTTGTCCATGAAGTTGGCCA 600 consensus_11290#1 -------------------------------AGACAAGG--------GGGAAGTTGGCC- 20 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 CTGTGAATCCCCAGCTGGACTTCAACAATTTGCCTAACCTCCTTGCTAAAGATATGCACC 660 consensus_11290#1 CTGTGAATCCCCAGCTGGACTTCAACANTTTGCCTAACCTCCTTGCTAAAGATATGCACC 80 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 AGTCATGCAGCCCGTTACAGAGCTCACATTTTCCACTAGAGACCTCAGGTGCGCCGCTGC 720 consensus_11290#1 AGTCATGCNGCCCGTTACAGAGCTCACATTTTCCACTANAGACCTNAGGTGCGCCGCTGC 140 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 CCTACATTAACCAGCCTCAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGCATGG 780 consensus_11290#1 CCTACATTAACCAGCCTNAGCAAGGGAACCCTCTCGGTTGTGGCCTGACGAACGGNATGG 200 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 ACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACC 840 consensus_11290#1 ACAACCAGGGTTCTATGCACCCATTGGACCCGGCATTTTGCCGGCCAATGGGCTCGCACC 260 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 ATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATG 900 consensus_11290#1 ATCCTTTCCTCAATGGGGTTAGCGATGCGGCTTCTCAGGTTGGTGCTTTCTGGCAAGATG 320 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 ATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCA 960 consensus_11290#1 ATCTCCAAAGTGTTGTTCAGATGGATATGGGGCAAAGTCAGGAGATCGCCACCTCTTCCA 380 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 ATAGCTACAATGGATCGTTGCAAACAGTCCACATGAAAATGGAGCTTTGACATGACCAAA 1020 consensus_11290#1 ATANCTACAATGGATCGTTGCAAACAGNCCACATGAAAATGGAGCTTTGACATGACCAAA 440 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 TAAAGGTTCGATCCAAAGCTCTGACGCCCATTGTACATACAGAGAAGTCAGCTTGCCGCG 1080 consensus_11290#1 TAAAGGTTCGATCCAAAGCTCTGACGCCCATTGTACATACAGAGAAGNCAGCTTGCCGCG 500 consensus_11290#2 ------------------------------------------------------------ consensus_11290#0 GCAGCACTCTGAGATTCAACCCTAACAATGTTGGGCCCTAGCAGTGTTTTAGCTTCTAAT 1140 consensus_11290#1 GCAGCACTCTGAGATTCAACCCTAACAATGTTGGGCCCTAGCAGTGTTTTAGCTTCTAAT 560 consensus_11290#2 ---------------------------------GGCCCTAGCAGTGTTTTAGCTTCTAAT 27 *************************** consensus_11290#0 TTCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAA-CGCACCATGTACGGTAGTC 1199 consensus_11290#1 TNCCCATCTTGGTGTAATGATTCTTTGAACAAAAATGAAAACGCACCATGTACGGTAGTC 620 consensus_11290#2 TTCCCATCTTGGTGTAATGATTCTTTGAANAAAAATGAAA-CGCNCCATGTACGGTAGTC 86 * *************************** ********** *** *************** consensus_11290#0 GGGTGTAGTATATATATGTATGCTACAAG-ATCGTACATAAGTCGGGTGCAGTATATGAT 1258 consensus_11290#1 GNGTGTAGTATATATATGGATGCTACAAGGATCGTACNTAACTCGGNTGCAGTATATGAT 680 consensus_11290#2 GGGTGTAGTATATATATGTATGCTACAAG-ATCGTACATAAGTCGGGTGCAGTATATGAT 145 * **************** ********** ******* *** **** ************* consensus_11290#0 GCTTCATTCAGACCCTTTTACCCTCTCAAGCAGAGAGGGACGACGTGTAATATCATTATT 1318 consensus_11290#1 GCTTCATTCAGACCCTTTTACCTTNTAAGCAGGAGAGGGACGACGGGGAAAAACATTAAT 740 consensus_11290#2 GCTTCATTCAGACCNTTTTACCCTTTCAAGCAGAGAGGGACGACGTGTAATATCATTATT 205 ************** ******* * * * ************* * ** * ***** * consensus_11290#0 TGTA-TTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTAAACCTGTCAAAA 1377 consensus_11290#1 TGGAATTCNNATTATATTTGGAGCTGANATANANCTTTAAAACCC--------------- 785 consensus_11290#2 TGTA-TTCTCATTATATTTGTAGCTGATATATATCTTTAAGATCCTTCTTCCTGTCCATG 264 ** * *** ********** ****** *** * ****** * ** consensus_11290#0 AAAAAAAAAAAAAAAA-------------------------------------------- 1393 consensus_11290#1 ------------------------------------------------------------ consensus_11290#2 GATCGATCTCCTTAAGCTGAAATTATCCCCTTTTTTTCCCCAAAAAAAAAAAAAAAAAAA 324 consensus_11290#0 ------------- consensus_11290#1 ------------- consensus_11290#2 AAAAAAAAAAAAA 337 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||