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Oryza sativa
cluster # 11293 cluster # 11293       Sequences # 8       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11293#0 length = 2180 sequences # 6  
 consensus_11293#1 length = 808 sequences # 1  
consensus_11293#2 length = 492 sequences # 1  
consensusID : consensus_11293#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 2180
fasta sequence 
                              [GAGACACCTGGAACCCCCCCGATCAAGCGGCGCGGCCTAACCTAACCCCGTGCGTCGCGTCGTCGAGAGGGGCGAAGCATCGGCGGGCCGCCGACGCCGACGAGGTCCTCCTCGGGCAACGACGGCGAACGCGCCGGCCACCGCCGCCATGTCGAAGAAGAAGGCGGTGACGACGATGACGCTCAAGGACTTCCACGGCGGCTCCATCCCCTCCGAGCTCCCCCTCCCCTCCGCCCCCGGCGTCTCCGCGCGCCCGGCGGACCGCCCCGTGGCCTCCCAGGCGGCCGCTCCCGCGGCGGCGGCCGCGGTCCCGTCGTTCCTCACCAACCCTTCCCGCATCGGCCGCCACTTCGACGAGGACGAGCGCACGCCCTTCGAGGCCGCCTCCACGCCGCGCCGCCCGGCCCCGTCGCCCCCGTCGTTCGCCCCATCCCCGGCTGCGGGGCCCACCAGATCCGGGCCCGGGAACGCCTGCGGGGCCGAGGAGGGAGGCGGCTCCGACCGCGGCGCCGGTGAGTCCTGCCGCCAGCGGCGGCGGCGGTGGTCAGATCTGGTCGGCGACGCGCATTGCGCAGGCGAGCGCCGTGGAGAAGGTGATCTCCGGGAGGTGGAACTCGTCGAAACCCTCCTCTCCACCGGCGGCGCCTGTGTCGGTCCCAGTGGTGGTGGAGACTCATGTTGCACCGCCGGAGATGGAGAGGCCAAAGTCAGTCGGGGTGAGAGAGCTGGATGGTGGCATAGAGAGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTAGAGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGCGTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAAGTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAAAGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACAGGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAGTTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGCCAGTTGAGCCACCAAAGCCTGA-GGTTGTT-GCACCTCGTTTTGGGAAAGGAGCATCTGCATTGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCA-GGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGG-AAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAGCATATTGGTTT-CCCGGTACTTCATTAGCACGTTATACTTTCTTCTTTTCACTATAGTAAAGGACATAAT]

[+] EMBL AK100024             [GAGACACCTGGAACCCCCCCGATCAAGCGGCGCGGCCTAACCTAACCCCGTGCGTCGCGTCGTCGAGAGGGGCGAAGCATCGGCGGGCCGCCGACGCCGACGAGGTCCTCCTCGGGCAACGACGGCGAACGCGCCGGCCACCGCCGCCATGTCGAAGAAGAAGGCGGTGACGACGATGACGCTCAAGGACTTCCACGGCGGCTCCATCCCCTCCGAGCTCCCCCTCCCCTCCGCCCCCGGCGTCTCCGCGCGCCCGGCGGACCGCCCCGTGGCCTCCCAGGCGGCCGCTCCCGCGGCGGCGGCCGCGGTCCCGTCGTTCCTCACCAACCCTTCCCGCATCGGCCGCCACTTCGACGAGGACGAGCGCACGCCCTTCGAGGCCGCCTCCACGCCGCGCCGCCCGGCCCCGTCGCCCCCGTCGTTCGCCCCATCCCCGGCTGCGGGGCCCACCAGATCCGGGCCCGGGAACGCCTGCGGGGCCGAGGAGGGAGGCGGCTCCGACCGCGGCGCCGGTGAGTCCTGCCGCCAGCGGCGGCGGCGGTGGTCAGATCTGGTCGGCGACGCGCATTGCGCAGGCGAGCGCCGTGGAGAAGGTGATCTCCGGGAGGTGGAACTCGTCGAAACCCTCCTCTCCACCGGCGGCGCCTGTGTCGGTCCCAGTGGTGGTGGAGACTCATGTTGCACCGCCGGAGATGGAGAGGCCAAAGTCAGTCGGGGTGAGAGAGCTGGATGGTGGCATAGAGAGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTAGAGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGCGTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAAGTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAAAGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACAGGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAGTTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGCCAGTTGAGCCACCAAAGCCTGA GGTTGTT GCACCTCGTTTTGGGAAAGGAGCATCTGCATTGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCA GGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGGAAAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAGCATATTGGTTT CCCGGTACTTCATTAGCACGTTATACTTTCTTCTTTTCACTATAGTAAAGGACATA  ]
[+] EMBL AK058282             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GAGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTAGAGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGCGTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAAGTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAAAGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACAGGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAGTTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGCCAGTTGAGCCACCAAAGCCTGA GGTTGTT GCACCTCGTTTTGGGAAAGGAGCATCTGCATTGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCA GGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGG  AAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACCGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAGCATATTG                                                               ]
[+] EMBL CF309811             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGCGTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAAGTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAAAGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACAGGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAGTTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGCCAGTTGAGCCACCAAAGCCTGAGGGTTGTTNGCACCTCGTTTTGGGAAAGGAGCATCTGCATTGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCANGGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB633857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TAGGCTTACACGACGGGAGGACAACAGGAGAGTTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGCCAGTCGAGCCACCAAAGCCTGA GGTTGTT GCACCTCGTTTTGGGAAAGGAGCATCTGCATTGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGACAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCA GGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGG AAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAGCATATTGGTTT CCCGGTACTTGATTAGCACGTTATACTTTCTTCTTTTCACTATAAAAAAaaga     ]
[+] EMBL CB668984             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ctttGAAAAACGAGGGGTGCTGATCTCGTAACTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGATAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAGCATATTGGTTT CCCGGTACTTCATTAGCACGTTATACTTTCTTCTTTTCACTATAGTAAAGGACATAAT]
[-] EMBL AU225162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGATGTTGCCAGATCAGTGGTATGCCTATGTATGCAGCATATTGGTTTGNCCGGTACTTCATTAGCACGTTATACTTTCTTCTTTTCACTATAGTAAAGagcggc  ]




>consensus_11293#0
GAGACACCTGGAACCCCCCCGATCAAGCGGCGCGGCCTAACCTAACCCCGTGCGTCGCGT
CGTCGAGAGGGGCGAAGCATCGGCGGGCCGCCGACGCCGACGAGGTCCTCCTCGGGCAAC
GACGGCGAACGCGCCGGCCACCGCCGCCATGTCGAAGAAGAAGGCGGTGACGACGATGAC
GCTCAAGGACTTCCACGGCGGCTCCATCCCCTCCGAGCTCCCCCTCCCCTCCGCCCCCGG
CGTCTCCGCGCGCCCGGCGGACCGCCCCGTGGCCTCCCAGGCGGCCGCTCCCGCGGCGGC
GGCCGCGGTCCCGTCGTTCCTCACCAACCCTTCCCGCATCGGCCGCCACTTCGACGAGGA
CGAGCGCACGCCCTTCGAGGCCGCCTCCACGCCGCGCCGCCCGGCCCCGTCGCCCCCGTC
GTTCGCCCCATCCCCGGCTGCGGGGCCCACCAGATCCGGGCCCGGGAACGCCTGCGGGGC
CGAGGAGGGAGGCGGCTCCGACCGCGGCGCCGGTGAGTCCTGCCGCCAGCGGCGGCGGCG
GTGGTCAGATCTGGTCGGCGACGCGCATTGCGCAGGCGAGCGCCGTGGAGAAGGTGATCT
CCGGGAGGTGGAACTCGTCGAAACCCTCCTCTCCACCGGCGGCGCCTGTGTCGGTCCCAG
TGGTGGTGGAGACTCATGTTGCACCGCCGGAGATGGAGAGGCCAAAGTCAGTCGGGGTGA
GAGAGCTGGATGGTGGCATAGAGAGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAG
GCAGGGTTGGGGAGGCTAGAGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGC
CAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTC
GCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGC
ATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGA
ATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGC
GACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTC
CAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGC
GTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAA
GTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAA
AGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACA
GGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAG
TTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGC
CAGTTGAGCCACCAAAGCCTGAGGTTGTTGCACCTCGTTTTGGGAAAGGAGCATCTGCAT
TGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGA
CAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGATCAGGTTGGCTTCT
CAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTT
ACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGC
CTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGGAAAAAAAAA
ATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAACTGGTGGCT
CATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTT
CAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGG
ATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCC
TATGTATGCAGCATATTGGTTTCCCGGTACTTCATTAGCACGTTATACTTTCTTCTTTTC
ACTATAGTAAAGGACATAAT

consensusID : consensus_11293#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 808
fasta sequence 
                              [AGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTTTTGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGTAGGTGGTGTTTAGCCCCCTCCTCCACCCCCGCCTCCCTTCTTTTCAACTAATTCTTGAATGTTACGTCTATTTTTATCATTTGGATTATGCTGTTGGTTGCTTGCCATATGTGTGGTACACTTGGCCTGTTCAAGCACCTTTTTATGTTTTGTTAAATGTTGAGGTTACAAGTATCCATCTGGTTGATTGATCTTTGTTAATATGAAATAGGTGCATTTAGATTGGAATATTAATCTTCGTTGTTTGCATTCAGTATGTACATTTCCACATGCATGTTTGTGCTGTGCGCTATTAAGAATGGCTTGTTATTTTGTTTTGGATTCTACCTTGTTGGAGGACTACAGCAATTTGCAGTATTGTATTATTGGAGGTCATCTTTCTTTTTTCTTTGTTGACAA]

[+] EMBL CB633856             [AGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTTTTGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGTAGGTGGTGTTTAGCCCCCTCCTCCACCCCCGCCTCCCTTCTTTTCAACTAATTCTTGAATGTTACGTCTATTTTTATCATTTGGATTATGCTGTTGGTTGCTTGCCATATGTGTGGTACACTTGGCCTGTTCAAGCACCTTTTTATGTTTTGTTAAATGTTGAGGTTACAAGTATCCATCTGGTTGATTGATCTTTGTTAATATGAAATAGGTGCATTTAGATTGGAATATTAATCTTCGTTGTTTGCATTCAGTATGTACATTTCCACATGCATGTTTGTGCTGTGCGCTATTAAGAATGGCTTGTTATTTTGTTTTGGATTCTACCTTGTTGGAGGACTACAGCAATTTGCAGTATTGTATTATTGGAGGTCATCTTTCTTTTTTCTTTGTTGACAA]




>consensus_11293#1
AGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTTTTGGC
TTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGAT
GTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCA
GAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAAT
ACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGA
GTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTGAAACCC
CGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGTAGGTGGTGTTT
AGCCCCCTCCTCCACCCCCGCCTCCCTTCTTTTCAACTAATTCTTGAATGTTACGTCTAT
TTTTATCATTTGGATTATGCTGTTGGTTGCTTGCCATATGTGTGGTACACTTGGCCTGTT
CAAGCACCTTTTTATGTTTTGTTAAATGTTGAGGTTACAAGTATCCATCTGGTTGATTGA
TCTTTGTTAATATGAAATAGGTGCATTTAGATTGGAATATTAATCTTCGTTGTTTGCATT
CAGTATGTACATTTCCACATGCATGTTTGTGCTGTGCGCTATTAAGAATGGCTTGTTATT
TTGTTTTGGATTCTACCTTGTTGGAGGACTACAGCAATTTGCAGTATTGTATTATTGGAG
GTCATCTTTCTTTTTTCTTTGTTGACAA

consensusID : consensus_11293#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence 
                              [AGTCCAGGGACCAGGGATCAGGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGGAAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAGCTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAAAAAAAAAAAAAAAAAACACTGTCATGCGGT]

[-] EMBL CF309812             [AGTCCAGGGACCAGGGATCAGGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGCTCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCATGTTTGATTCTTCCATCATGGGAAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACACACGAGGGGTGCTGATCTCGTAGCTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGGAATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTGTTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAAAAAAAAAAAAAAAAAACACTGTCATGCGGT]




>consensus_11293#2
AGTCCAGGGACCAGGGATCAGGTTGGCTTCTCAAGGCTCACTGACAACCGGGCATTACAC
TCTAGCCCCTCGCAGCGAAAGATTAACGGTTACTAACCTCATTGCACATGCACGCTGTGC
TCCCATGATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCACTGGTTTTATCTTCA
TGTTTGATTCTTCCATCATGGGAAAAAAAAAATCAATTGTTGCTCTCTGGATGGCGACAC
ACGAGGGGTGCTGATCTCGTAGCTGGTGGCTCATTTCCACTCTTGATAACAAAGAGATGA
GAATTTATGAACTATTTGTGCTTCTATTCTTCAGCCTGCTACCCGTGATTTAAGCTGGGG
AATAATTTGCAACCTCTGTGCTGCTACTTGGATGTGCCACATATGTTTCTGGTGTGCTTG
TTTTAAGATGTTGCCAGATCAGTGCTATGCCTATGTATGCAAAAAAAAAAAAAAAAAACA
CTGTCATGCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11293#0      GAGACACCTGGAACCCCCCCGATCAAGCGGCGCGGCCTAACCTAACCCCGTGCGTCGCGT 60
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CGTCGAGAGGGGCGAAGCATCGGCGGGCCGCCGACGCCGACGAGGTCCTCCTCGGGCAAC 120
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GACGGCGAACGCGCCGGCCACCGCCGCCATGTCGAAGAAGAAGGCGGTGACGACGATGAC 180
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GCTCAAGGACTTCCACGGCGGCTCCATCCCCTCCGAGCTCCCCCTCCCCTCCGCCCCCGG 240
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CGTCTCCGCGCGCCCGGCGGACCGCCCCGTGGCCTCCCAGGCGGCCGCTCCCGCGGCGGC 300
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GGCCGCGGTCCCGTCGTTCCTCACCAACCCTTCCCGCATCGGCCGCCACTTCGACGAGGA 360
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CGAGCGCACGCCCTTCGAGGCCGCCTCCACGCCGCGCCGCCCGGCCCCGTCGCCCCCGTC 420
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GTTCGCCCCATCCCCGGCTGCGGGGCCCACCAGATCCGGGCCCGGGAACGCCTGCGGGGC 480
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CGAGGAGGGAGGCGGCTCCGACCGCGGCGCCGGTGAGTCCTGCCGCCAGCGGCGGCGGCG 540
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GTGGTCAGATCTGGTCGGCGACGCGCATTGCGCAGGCGAGCGCCGTGGAGAAGGTGATCT 600
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CCGGGAGGTGGAACTCGTCGAAACCCTCCTCTCCACCGGCGGCGCCTGTGTCGGTCCCAG 660
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      TGGTGGTGGAGACTCATGTTGCACCGCCGGAGATGGAGAGGCCAAAGTCAGTCGGGGTGA 720
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GAGAGCTGGATGGTGGCATAGAGAGGAGCGTGGCGCCAGTGAGGCCTGCGTCGCATGAAG 780
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GCAGGGTTGGGGAGGCTAGAGGCTTGGAGGTGCAAGAGAGACCTAGGGTGGGTGATGTGC 840
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGAGACCTAAGTTGAAGCTGCTTCCTC 900
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTGTCTATGTTGAAGAGAAGCAGGTGC 960
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      ATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTGACGTTATTCATGATGTGCACCAGA 1020
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      ATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAGATGCTGAGGGCCGGGCAGTGGAGC 1080
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GACCACGATTGAATCTGAAACCCCGCTCCAATGCAGTAGGACAGTCTGATGAAAGTGCTC 1140
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      CAAAGGAAAGGCAATCCCTCTTTGGTGGAGCTCGGCCCAGGGAACAAGTTCTCAGAGAGC 1200
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GTGGAATAGATGCTTTAGCAAGTGACCTTGATAAGACATCTCCAGTTGGCAGGTCTAAAA 1260
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GTGAATTTGCAAAGGGTGAGCAGAAGGTCGAAGCTATGTCCATTAACCCTTCAGGTGAAA 1320
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      AGGCTGAGAGTTTTCCAGCTGGTTCTAGAGGCCCAAGGAATGCTGATAAGAAAGACTACA 1380
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      ------------------------------------------------------------
                                                                                   

consensus_11293#0      GGCGGGATACAGACCGGAGTGATGTGTATAGGCCTACACGACGGGAGGACAACAGGAGAG 1440
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      -----------------------------------------------AGGAGCGTGGCGC 13
                                                                                   

consensus_11293#0      TTGCTAGAGATGTGGAGAAGCCCGAGCAACAGCGTCCAGAGCCTGAAACCTGGCGTAAGC 1500
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      CAGTGAGGCCTGCGTCGCATGAAGGCAGGGTTGGGGAGGCTTTTGGCTTGGAGGTGCAAG 73
                                                                                   

consensus_11293#0      CAGTTGAGCCACCAAAGCCTGAGGTTGTTGCACCTCGTTTTGGGAAAGGAGCATCTGCAT 1560
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      AGAGACCTAGGGTGGGTGATGTGCCAGAGAGACCTAGGGTTGGTGATGTGCTGCCAGAGA 133
                                                                                   

consensus_11293#0      TGGAGCTTGCACAAGCCTTCTCGAAGTCCATGTCTGATACTGTGCCTCAGAGTCGCTTGA 1620
consensus_11293#2      ------------------------------------------------------------
consensus_11293#1      GACCTAAGTTGAAGCTGCTTCCTCGCTCCAAGCCAATCGAGGCTTCAGAACCATCTCCTG 193
                                                                                   

consensus_11293#0      CAAGTGTTCCTAGCCCTAAAGTGCCCCAGAGTCCAGGGACCAGGGAT------CAGGTTG 1674
consensus_11293#2      -----------------------------AGTCCAGGGACCAGGGAT------CAGGTTG 25
consensus_11293#1      TCTATGTTGAAGAGAAGCAGGTGCATCAGGTTCCAGTGGTCGCGAATACTGTGCAGGTTG 253
                                                      ***** *  *  * **      *******

consensus_11293#0      GC-TTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCC---TCGCAGCGAAAG 1730
consensus_11293#2      GC-TTCTCAAGGCTCACTGACAACCGGGCATTACACTCTAGCCCC---TCGCAGCGAAAG 81
consensus_11293#1      ACGTTATTCATGATGTGCACCAGAATGTTGTAGCACCTAAAGCAGGAGTAGCAGGGGCAG 313
                        * ** *  * * *      **    *   *  ***   *  *     * **** *  **

consensus_11293#0      AT--TAACGGTT---------ACTAACCTC-ATTGCACATGCACGCTGTGCTCCCATG-- 1776
consensus_11293#2      AT--TAACGGTT---------ACTAACCTC-ATTGCACATGCACGCTGTGCTCCCATG-- 127
consensus_11293#1      ATGCTGAGGGCCGGGCAGTGGAGCGACCACGATTGAATCTG-AAACCCCGCTCCAATGCA 372
                       **  * * **           *   *** * **** *  ** *  *   ***** ***  

consensus_11293#0      ATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCAC-TGGT-TTTATCTTCATGTTT 1834
consensus_11293#2      ATGGCACGACTCAAATACCATGGCCTCGCCGAAGCGCAC-TGGT-TTTATCTTCATGTTT 185
consensus_11293#1      GTAGGACAGTCTGATGAAAGTGCTCCAAAGGAAAGGTAGGTGGTGTTTAGCCCCCTCCTC 432
                        * * **      *  *   **  *     ***  * *  **** **** *  * *  * 

consensus_11293#0      GATTC-----TTCCATCATGGGAAAAAAA-----------AAATCAATTGTTGCTCTCTG 1878
consensus_11293#2      GATTC-----TTCCATCATGGGAAAAAAA-----------AAATCAATTGTTGCTCTCTG 229
consensus_11293#1      CACCCCCGCCTCCCTTCTTTTCAACTAATTCTTGAATGTTACGTCTATTTTTATCATTTG 492
                        *  *     * ** ** *   **  **            *  ** *** **    * **

consensus_11293#0      GAT---------GGCGACACACGAGGGGTGCTGATCTCGTAACTGGT---GGCTCATTTC 1926
consensus_11293#2      GAT---------GGCGACACACGAGGGGTGCTGATCTCGTAGCTGGT---GGCTCATTTC 277
consensus_11293#1      GATTATGCTGTTGGTTGCTTGCCATATGTGTGGTACACTTGGCCTGTTCAAGCACCTTTT 552
                       ***         **   *   * *   ***  *  * * *  *  **    ** * *** 

consensus_11293#0      CACTCTTGAT--AACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGC 1984
consensus_11293#2      CACTCTTGAT--AACAAAGAGATGAGAATTTATGAACTATTTGTGCTTCTATTCTTCAGC 335
consensus_11293#1      TATGTTTTGTTAAATGTTGAGGTTACAAGTATCCATCTGGTTG-ATTGATCTTTGTTAAT 611
                        *   **  *  **    *** * * ** *    * **  ***   *  * **  * *  

consensus_11293#0      CTGCTACCCGTG-ATTTAAGCTGGGGAAT-AATTTGCAACCTCTGTGCT-GCTACTTGGA 2041
consensus_11293#2      CTGCTACCCGTG-ATTTAAGCTGGGGAAT-AATTTGCAACCTCTGTGCT-GCTACTTGGA 392
consensus_11293#1      ATGAAATAGGTGCATTTAGATTGGAATATTAATCTTCGTTGTTTGCATTCAGTATGTACA 671
                        **  *   *** *****   ***   ** *** * *    * **   *   **  *  *

consensus_11293#0      TGTGC-CACATATGTTTCTGGTGTGCTTGTTTTAAGATG--TTGCCA----GATCAGTGC 2094
consensus_11293#2      TGTGC-CACATATGTTTCTGGTGTGCTTGTTTTAAGATG--TTGCCA----GATCAGTGC 445
consensus_11293#1      TTTCCACATGCATGTTTGTGCTGTGCGCTATTAAGAATGGCTTGTTATTTTGTTTTGGAT 731
                       * * * **   ****** ** *****    ** *  ***  ***  *    * *  *   

consensus_11293#0      TATGCCTATGTATGCAGCATATTGGTTTCCCGGTACTTCATTAGCACGTTATACTTTCTT 2154
consensus_11293#2      TATGCCTATGTATGCAAAAAAAAAAA-----AAAAAAACACTGTCATGCGGT-------- 492
consensus_11293#1      TCTACCTTGTTGGAGGACTACAGCAATTTGCAGTATTGTATTATTG-GAGGTCATCTTTC 790
                       * * ***   *                       *    * *     *   *        

consensus_11293#0      CTTTTCACTATAGTAAAGGACATAAT 2180
consensus_11293#2      --------------------------
consensus_11293#1      TTTTTTCTTTGTTGACAA-------- 808


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)