These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11296#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1612 fasta sequence [TATCCTTCCCGAGCACGCACACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC-GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA] [+] EMBL AK103570 [TATCCTTCCCGAGCACGCACACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCA ] [+] EMBL AK061986 [ ACTCGCCGCCGCACTCCACTTCCCCAACACGCCGCCGCCGCCGCCGCCGCCCGAGCTCGCCGCGATGTCATGGCTCGCGCGCTCAATCGCGGCTACCCTCTCTTCTTCCCACTCTGATGAAGATGGCGATAACCTCGAGGCGAGCAGCGGCGACGACCATAGGGACGAGCAGCCGGACACCCCGAGCGGCGGCGGCGGCGGAGTCAAGGGCGACTTGTCGGAGCTGACCGACTCCCTCACCCGCGGCCTCTGGGGCGTCGCTTCCTTCCTCGCTCCGCCGCCTGCGCCCGCCGCCGAAGCCGCGGAGACGGCTACGGGGGCGGTGGGGGAGGGGGAGGATGGGGCTCGGTCGCCGCGGATCGCCGGGATCCGGAGCGACCTGGCGGAGATCGGGGGCAGGGTGAGGAGCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTC ] [+] EMBL BP185009 [ acGAGG GCGGAATCTCGTTGCTCTCGAACGCCAACGCCGTGGCGGAGATCTCCAAGATCGCCTCGTCGCTCCTGCCGTTCGGGCCCGGAGAGGACGACGACGACGACGACGATGCCGAGGCTGTGGGCGTGACCGAGGAGGTGGTGGAGTTCGTGAGGCACATCTCGACCCATCCCGAGACGTGGCTCGACTTCCCCTTGTTTGTCAACGACCGGCACGCGGATGATTTTGAACTGTCAGACACACAATATGGACATGCATTGGCTATAGAGCGTGTTGTTCCAAGCTTGTCATATCTTAGGACCGAGCTTTGCTCTACCAATATGAGTGAAGCATGCTTTTGGAAGATCTATTTTGTGCTTCTTCACTCAAAACTCAGCAAGCAAGATGCTGAACTTCTTTCAACGCCACAGATCCTAAAAGCAAGAGAAGTATTATTGCAAAGTTCACCGACAAAGAAAAGGCTGGGACCTGATGATGGTTCATCACAAAACTGGAATGTTGCATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAA ] [-] EMBL CA760200 [ CATCTACCAAAGGTGACAACAGTGGAATGTCTGAAGCACCTTCATTGGAAGAAGCAACTTCTGTACCGATGAATGTGGTTGAGGCTGACAAGCATCCGATTTCAGTCGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAAAGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTCTGAATGTAAGATATCCTCTCATTTGCTGTCAAAAAA ] [+] EMBL AU063746 [ CGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTNACTCTAAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGANAGACGGCTAGCTTAAGCAGCGCANCAAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAACGGGCTAGCTTCATGAAGACCATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGG ACCGTGTTNTTGCTGAGTNACGGATTCATCCTAATTGCATGTTTATGTAATGATGTATTTA ] [+] EMBL AU063729 [ CGCTGAGGTGGAAATAATAGACAAGTCCGTGGTTGAAGAAGAGCTGGTGGTGAAAAATGAGACCAAGAGTATACCTTCTGACTCTGAGAAGGCTAATCTGCATATCACCTCGGACGATGATGATAAAGAGGTGGAGGACTGGCTGAAGGATGTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGANGACATATCCTTCAGTGATCTGGAGGATGAAGAGGTTGATTGAGAGACGG TAGCTTAAGCAGCG AG CAGTACTAG TNCCTCGG ] [+] EMBL AU182189 [ GTGGCTCCTGTGTCCAGCAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATATCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCACTCATACTTACTGGATTNTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA] [+] EMBL AU165308 [ CAAAACAGGCAACGTCAATTCAGCAGGGCAGGAGGAAGACATANCCTTCAGTGATCTGGAGGATGAAGAGGATGATTGAGAGACGGCTAGCTTAAGCAGCGCAGCCAGTACTAGTTCCCTCGGTTCAATGTCGCAAACACAAGACAAC GGCTAGCTTCATGAAGAACATCAACTGTTACTGAATGATCGAAACTCTGCAGCTACAGCAAAGGGAACCGTGTTGTTGCTGAGTGACGGATTCATCCTAATTGCATGTTGATGTAATGATGTATTTATGTTCGCTCTCTTTTTGTACATAGATATATACACTATGTCACCTGCGTGTGCACTGTATATCCACGATAGCGTGCAGCNCTCATACTTACTGGATTCTGAATGCAAGATATCCTCTCATTTGCTGTCAAAAAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||