cluster # 11299

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Oryza sativa
cluster # 11299 cluster # 11299 Sequences # 8 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11299#0 length = 1021 sequences # 6

consensus_11299#1 length = 223 sequences # 1
consensus_11299#2 length = 168 sequences # 1

consensusID : consensus_11299#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1021
fasta sequence

                              [GCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGNGTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGC-GCAGGGGGCGGGGGCGGGGCGGTGAAGGGGAAGTCCTGCAA-GGCTACCTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCC-GGAATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCATGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCACATGAATGCTGGACTTGTGGCAAATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG-CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC-TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA-GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA]

[+] EMBL AU102107             [GCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGNGTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGC GCAGGGGGCGGGGGCGGGGCGGTGAAGGGGAA TCCTGCAA GGCTACCTCTTCTACTCGTCGTCGCTCAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB661960             [                                                                                                                       GCGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGCGGAAAGGGGCGGGGGAGGGGCGGTGAAGGGGAAGTCCTGCAAGGGCTACCTCTTCTACTCGTCGTCGCTCACGTCGCGAGACCGCGGTCCCGTCTGCGCCAGGAATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCATGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCACATGAATGCTGGACTTGTGGCATATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGT                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU068531             [                                                                                                                                                                                            AAGTCCTGCAA GGCTACCTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCC GGCATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCAGGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAANGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU068530             [                                                                                                                                                                                                                                                                                                                                                                                                                               ACAAGCACCCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAATTTCAGAGGAATGCTGGACTTGTGGCTAATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA]
[+] EMBL AU063617             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATGGTGTAGCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCG CAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTACTTGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGAGGGTCATACTTGCGACTTCTTAGGATAATATCATGTCACCATTGCGAGCCA        ]
[+] EMBL C96650               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TGGGGCCTACATTAAAGACACCANGGATGATATCATGTATCCTTNCCGCCAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAATCCACTA TTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTAC TGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCTTGA GGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAA    ]




>consensus_11299#0
GCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGC
CGCCCGCCAGCCCGGCATGGAGCGNGTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGG
CGCGGGGTGCAGACGCGCCGCCGCCGCCGCCGGTGGCGCAGGGGGCGGGGGCGGGGCGGT
GAAGGGGAAGTCCTGCAAGGCTACCTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGC
GGTCCCGTCTGCGCCGGAATCACCCGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGA
GAAATTGAGATGGAAGCTATCCATGAAGGTCGCAACCTTTCCGACTTCAGATATGGATGT
ATCGGCTATTCCATGTATCTGGATGACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCAC
CCGCAACTGCCTATTTGTGTTGGAATCGAGCTATTGGCTGATAGAAAAACTTCGACTAAT
CAGGCTTCATCTCACCATAAAAAGGAAGCTCCCCAACCACGGCGATATAAGCCTGCACAG
AGAGGAGATGATTTCTTAACCAAATTTCACATGAATGCTGGACTTGTGGCAAATGGTGTA
GCAAGGAACTTAAATAAAGTTGGGGCCTACATTAAAGACACCATGGATGATATCATGTAT
CCTTACCGCAAACGTCCAAAGTAAAACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGA
GTAGACAAACGGGGGAGTGTCTAATCCACTACTTCCTGAAACACCTGGCTAGCACATAGA
TAGGCTCTGTAGGCAGTTATATGGAGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGT
GCCTTCACTTCATATCATGTTTCCCCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATT
TTACTGGGTTCCATCCAGCAATGTATAGGAGGTATGATGTAACACACAATATCACCTGCT
TGAGGTCATACTTGCGACTTCTGAGAATAATATCATGTCACCATTGCGAGCCAAAAAAAA
A

consensusID : consensus_11299#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGCGTCGCCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCCGCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA]

[+] EMBL AU181183             [GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGCGTCGCCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCCGCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA]




>consensus_11299#1
GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT
GCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGC
GTCGCCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCCG
CCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA

consensusID : consensus_11299#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGCGTNGCCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC]

[+] EMBL AU069090             [NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGTGCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGCGTNGCCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC]




>consensus_11299#2
NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT
GCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGC
GTNGCCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11299#1      GAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT 60
consensus_11299#2      NAGGTGAAGCCCCCCGCTCCACTCCTCCCAACTCCGCCGCCTCACGCCGCCGCCGCCGGT 60
consensus_11299#0      -----------------------------------GCCGCCTCACGCCGCCGCCGCCGGT 25
                                                          *************************

consensus_11299#1      GCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGC 120
consensus_11299#2      GCCCGATCCCGCACACGCGTATCCNTCCAGCTCGNCGCCCGNNAGCCCGGCATGGAGCGC 120
consensus_11299#0      GCCCGATCCCGCACACGCGTATCCCTCCAGCTCGCCGCCCGCCAGCCCGGCATGGAGCGN 85
                       ************************ ********* ******  **************** 

consensus_11299#1      GTCG-CCGGCGGCGGCGGAGGANNTTNCGGCGAGGCGCGGGGTGCANACGCGCCGCCGCC 179
consensus_11299#2      GTNG-CCGGCGGGGNGGAAGGAGGAGCCGGCGAGGCGCGGGGTGCAGAC----------- 168
consensus_11299#0      GTNNGCNGGCCGGNGCGGAGGAGGAGCNGGCGAGGCGCGGGGTGCAGACGCGCCGCCGCC 145
                       **   * *** *    * ****      ****************** **           

consensus_11299#1      GCCGCCGGTGGCGGCAGGGGGCGGGGGCCGGGCGGTGAAAGGGA---------------- 223
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      GCCGCCGGTGGCG-CAGGGGGCGGGGGCGGGGCGGTGAAGGGGAAGTCCTGCAAGGCTAC 204
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      CTCTTCTACTCGTCGTCGCTCAGGTCGCGAGACCGCGGTCCCGTCTGCGCCGGAATCACC 264
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      CGCGCCATCCCCCAAGTCCCTGATCACATGGTTGGAGAAATTGAGATGGAAGCTATCCAT 324
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      GAAGGTCGCAACCTTTCCGACTTCAGATATGGATGTATCGGCTATTCCATGTATCTGGAT 384
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      GACAAGAAGAGTTCTGAAGGGAAAGGTGACAAGCACCCGCAACTGCCTATTTGTGTTGGA 444
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      ATCGAGCTATTGGCTGATAGAAAAACTTCGACTAATCAGGCTTCATCTCACCATAAAAAG 504
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      GAAGCTCCCCAACCACGGCGATATAAGCCTGCACAGAGAGGAGATGATTTCTTAACCAAA 564
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      TTTCACATGAATGCTGGACTTGTGGCAAATGGTGTAGCAAGGAACTTAAATAAAGTTGGG 624
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      GCCTACATTAAAGACACCATGGATGATATCATGTATCCTTACCGCAAACGTCCAAAGTAA 684
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      AACCTAGATCTGGTTCTTTTTTAATCCTGAAGAAGAGTAGACAAACGGGGGAGTGTCTAA 744
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      TCCACTACTTCCTGAAACACCTGGCTAGCACATAGATAGGCTCTGTAGGCAGTTATATGG 804
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      AGGCCAAGTTGCACTCTATTCCGCTAGCTGTTTGGTGCCTTCACTTCATATCATGTTTCC 864
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      CCCCTAGCCTTCTCCCGCTATTGCAATGAGTTCATTTTACTGGGTTCCATCCAGCAATGT 924
                                                                                   

consensus_11299#1      ------------------------------------------------------------
consensus_11299#2      ------------------------------------------------------------
consensus_11299#0      ATAGGAGGTATGATGTAACACACAATATCACCTGCTTGAGGTCATACTTGCGACTTCTGA 984
                                                                                   

consensus_11299#1      -------------------------------------
consensus_11299#2      -------------------------------------
consensus_11299#0      GAATAATATCATGTCACCATTGCGAGCCAAAAAAAAA 1021