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Oryza sativa
cluster # 11302 cluster # 11302       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11302#0 length = 920 sequences # 3  
consensus_11302#1 length = 626 sequences # 1  
consensus_11302#2 length = 625 sequences # 2  
consensus_11302#3 length = 540 sequences # 1  
consensus_11302#4 length = 407 sequences # 1  

consensusID : consensus_11302#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 920
fasta sequence
                              [ATCGAGCTTCGTGGCAGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGGGCGACACGGAGCGCCGCGGGATCCGGGCGCTCCGGCAGGCGTGGCGGCTGATGACGCGG-GTGAGGAGGAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTC-TTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAG-CTGTTCTACTTTGCAGC-AGCCACGGTGTA-CT-GCT-GCCAGGCAATGGAC-AG-CAAGGGAGAGCCCA-TGGATTATGCATACGCCAAGATCCCTACCGGTGAA-CA-AATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCA-ATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACAACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA]

[+] EMBL AK099466             [ATCGAGCTTCGTGGCAGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGGGCGACACGGAGCGCCGCGGGATCCGGGCGCTCCGGCAGGCGTGGCGGCTGATGACGCGG GTGAGGAGGAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTC TTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAG CTGTTCTACTTTGCAGC AGCCACGGTGTA CT GCT GCCAGGCAATGGAC AG CAAGGGAGAGGCCA TGGATTATGCATACGCCAAGATCCCTACCGGTGAAGCA AATTGCTAATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCA ATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACAACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTC                             ]
[+] EMBL BM418914             [                                                                                                                                                                                                                                                                                                                                                                                                                     GACGCGGTGTGAGGAGGAAGGA GGCCTCGT CTGGTGGT GCCATCTGCCTCTTGTCGATA CTGTCAGCCCGGTGAACCT GTC CT CTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTCTTTGGTCGTCTATGCTCTGCTNTCTGGTGCAGA CAG CTGTTCTACTTTGCAGC AGCCACGGTGTA CT ACT GCCAAGCAATGGAC AG CAAGGGAGAGCCCACTGGATTATGCATACGCCAAGATCCCTACCGGTGAA C  AATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTAT CACATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACAACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA]
[+] EMBL BM038840             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AGCAGTCTGTTCTACTTTGCAGCAAGCCACGGTGTATCTATCTCNCCA ACAATGGACAAGCCAAGGGAGAGCCCA TGGATTATGCATAC CCAAGATCCCTACCGGTGAA CACAATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATCCA ATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGNGATCAAAAaaaaaa                                                                                         ]


>consensus_11302#0 ATCGAGCTTCGTGGCAGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCA TGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACA CCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTC GTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCGC TACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATA ACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGGGCGACAC GGAGCGCCGCGGGATCCGGGCGCTCCGGCAGGCGTGGCGGCTGATGACGCGGGTGAGGAG GAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGT GAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGT CTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCACGGTGTACTG CTGCCAGGCAATGGACAGCAAGGGAGAGCCCATGGATTATGCATACGCCAAGATCCCTAC CGGTGAACAAATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAG TATCTGCGTGTGTCATTATGCAATGGTATATATACATATGTATGACATATGCTATTATGT TGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACAACCGCTCTTA TTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTCTGAAA TATATATTCATTCTACAAAA



consensusID : consensus_11302#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence
                              [AGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCNGCGCCGAGTACCGCATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGTCGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTCCTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCCTGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGTTCTNATCTATTCCGTCATGCANGTGCAACGGCACTACTTGGATCAGGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCCTCCTCTACTNTCACGTCNTTGGCATGGTAAGCGTCGC]

[+] EMBL CA755073             [AGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCNGCGCCGAGTACCGCATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGTCGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTCCTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCCTGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGTTCTNATCTATTCCGTCATGCANGTGCAACGGCACTACTTGGATCAGGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCCTCCTCTACTNTCACGTCNTTGGCATGGTAAGCGTCGC]


>consensus_11302#1 AGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTG AAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTG ATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCC ATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCNGCGCCGAGTAC CGCATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCC GTCGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCC TCCTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAG GGGAATCTCAAGGGTCCTCTCATAACCATCGCCCTGGTCACCGTACTCCGGGTCACATAC ATGGCGCTCCTCGGTGTTCTNATCTATTCCGTCATGCANGTGCAACGGCACTACTTGGAT CAGGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCCTCCTCTACTNT CACGTCNTTGGCATGGTAAGCGTCGC



consensusID : consensus_11302#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 625
fasta sequence
                              [TTCTGTTTCCTTCCCTTCCTCTTACTTCACGTCGTTG-CATGTGAGCTTCCCGTGTCGTTGGGCTGACACGGAGCCCGCGGGATCCGGGCGCTCCGGCAGGC-GTGCGGCTGATGACGCGGGTGAGGAGGAAGGAGGCCTCGTGCTGTTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGG-TCGCTGCTGCGTACNCGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGCATACGCCAAGATCCCTACCGGTGAAGCAAATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGC-ATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTAC-ACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA]

[+] EMBL BM419419             [TTCTGTTTCCTTCCCTTCCTCTTACTTCACGTCGTTG CATGTGAGCTTCCCGTGTCGTTGGGCTGACACGGAGCCCGCGGGATCCGGGCGCTCCGGCAGGC GTGCGGCTGATGACGCGGGTGAGGAGGAAGGAGGCCTCGTGCTGTTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGG TCGCTGCTGCGTACNCGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGCATACGCCAAGATCCCTACCGGTGAAGCAAATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGC ATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTAC ACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA]
[+] EMBL BI800254             [                              GTCGTTGCCATGTGAGCTTCCCGTGTCGGT GGC GACACGGAGCCCGC GGATCCGGGCGCTCC GCAGGCTGTGCCGCTGATGACGCGGTTGAGGAGGAAGGAGGCCTCGTGCTGTTGGTGCCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGGTTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGCCCATGGATTATGCATACGCCAAGATCCCTACCGGTGAAGC AATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCAATGGTATATATACATATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACAACCGCTCTTATTGTTAaaaaaaaaa                                                                 ]


>consensus_11302#2 TTCTGTTTCCTTCCCTTCCTCTTACTTCACGTCGTTGCATGTGAGCTTCCCGTGTCGTTG GGCTGACACGGAGCCCGCGGGATCCGGGCGCTCCGGCAGGCGTGCGGCTGATGACGCGGG TGAGGAGGAAGGAGGCCTCGTGCTGTTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAG CCCGGTGAACCTGGTCGCTGCTGCGTACNCGAAGAACATGGTACTGGGGCTATGCCTCTT GGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCACGGT GTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGCATACGCCAAGAT CCCTACCGGTGAAGCAAATTGCTGATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTA TTATTAGTATCTGCGTGTGTCATTATGCATGGTATATATACATATGTATGACATATGCTA TTATGTTGTGTACGACACATGTGTATCACTATTATTAATTAGTGATCAAAACTACACCGC TCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATATCATTGTGGGCTTCACTCATTC TGAAATATATATTCATTCTACAAAA



consensusID : consensus_11302#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [CATGGACGAAGGAGTAGAAAAACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCAGCGCCGAGTACCGCATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGTCGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTCCTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGTTCTAATCTATTCCGTCATGCAAGTGCAACGGCACTACTTGATCAAGGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCTTCCTCTACTTCAACGTCGTTGGCATGGTGAGCGT]

[+] EMBL CF313821             [CATGGACGAAGGAGTAGAAAAACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCAGCGCCGAGTACCGCATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGTCGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTCCTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATAACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGTTCTAATCTATTCCGTCATGCAAGTGCAACGGCACTACTTGATCAAGGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCTTCCTCTACTTCAACGTCGTTGGCATGGTGAGCGT]


>consensus_11302#3 CATGGACGAAGGAGTAGAAAAACCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGT CCTCTCTACCAATGTCCTATTCGTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAAT CAAGCTCCAGACCACCGACCCTTCCAGCGCCGAGTACCGCATGATCCTGGAGGAGCTGAA ACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGTCGAGCTCGTCGCTTTGGTGCT TGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTCCTCCACCTACTCCGGCGACCG CTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCAT AACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGTTCTAAT CTATTCCGTCATGCAAGTGCAACGGCACTACTTGATCAAGGTGCTCTCCGTGCAAGTCCT CCTCTTCGTCCTCTGTTTCCTCGCCTTCCTCTACTTCAACGTCGTTGGCATGGTGAGCGT



consensusID : consensus_11302#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 407
fasta sequence
                              [GATGACGCGGGTGAGGAGGAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTTTACTTTGCAGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGCATACGCCAAGATCCCTACCGGTGAAGCAAATTGCTAATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCAATGGTATATATACATATGTATGACATATGCAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT]

[-] EMBL CF313820             [GATGACGCGGGTGAGGAGGAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGTGAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGGGCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTTTACTTTGCAGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGCATACGCCAAGATCCCTACCGGTGAAGCAAATTGCTAATTGGTATGGACAGGAAAGAAATAAGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCAATGGTATATATACATATGTATGACATATGCAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT]


>consensus_11302#4 GATGACGCGGGTGAGGAGGAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTC GATAGCTGTCAGCCCGGTGAACCTGGTCGCTGCTGCGTACACGAAGAACATGGTACTGGG GCTATGCCTCTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTTTACTTTGC AGCAGCCACGGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTATGC ATACGCCAAGATCCCTACCGGTGAAGCAAATTGCTAATTGGTATGGACAGGAAAGAAATA AGCTTATTAGTATTATTAGTATCTGCGTGTGTCATTATGCAATGGTATATATACATATGT ATGACATATGCAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11302#2      ------------------------------------------------------------
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      ATCGAGCTTCGTGGCAGACTGTAAGCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCA 60
consensus_11302#1      ------------------------------------------------------------
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      ------------------------------------------------------------
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      TGCTTTACCTTCCTGAAGGAAGCCCTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACA 120
consensus_11302#1      ------------------------------------------------------------
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      ------------------------------------------------------------
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      CCTGTCTTCCTCCTGATCGCGCTTCCTAGCTTCCTTGTCCTCTCTACCAATGTCCTATTC 180
consensus_11302#1      ------------------------------------------------------------
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      ------------------------------------------------------------
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      GTCCAGCCACTCTCCATGGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCGC 240
consensus_11302#1      ------------------------------------------------------------
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      ----------------------------------------------------TTCTGTTT 8
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      TACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGGGAATCTCAAGGGTCCTCTCATA 300
consensus_11302#1      ---------------------------------------------------AGACTGTAA 9
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      CCTTCCCTTCCTCTTACTTCACGTCGTTGCATGTGAGCTTCCCGTGTCGTTGGGCTGACA 68
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      ACCATCGCCATGGTCACCGTACTCCGGGTCACATACATGGCGCTCCTCGGTGGGCGACAC 360
consensus_11302#1      GCTATGGCAGCCAGAACAAGCGCTAACTTCTCATCATGCTTTACCTTCCTGAAGGAAGCC 69
consensus_11302#3      ------------------------------------------------------------
                                                                                   

consensus_11302#2      CGGAGCCCGCGGGATCCGGGCGCTCCGGCAGGCGTG-CGGCTGATGACGCGGGTGAGGAG 127
consensus_11302#4      ------------------------------------------GATGACGCGGGTGAGGAG 18
consensus_11302#0      GGAGCGCCGCGGGATCCGGGCGCTCCGGCAGGCGTGGCGGCTGATGACGCGGGTGAGGAG 420
consensus_11302#1      CTAGTCCTCCCAACTCAGAACCCCAAGCTCTTCACACCTGTCTTCCTCCTGATCGCGCTT 129
consensus_11302#3      --------------CATGGACGAAGGAGTAGAAAAACCTGTCTTCCTCCTGATCGCGCTT 46
                                                                      *  *   * *   

consensus_11302#2      GAAGGAGG-CCTCGTGCTGTTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGT 186
consensus_11302#4      GAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGT 78
consensus_11302#0      GAAGGAGGGCCTCGTGCTGGTGGTGGCCATCTGCCTCTTGTCGATAGCTGTCAGCCCGGT 480
consensus_11302#1      CCTAGCTT-CCTTGTCCTCTC--TACCAATGTCCTATTCGTC--CAGCCACT--CTCCAT 182
consensus_11302#3      CCTAGCTT-CCTTGTCCTCTC--TACCAATGTCCTATTCGTC--CAGCCACT--CTCCAT 99
                           *    *** ** **     *  * ** * *   * ***   ***      * *  *

consensus_11302#2      GAACCTGGTCGCTGCTGCGTACNCGA---AGAACATGG----TACTGGGGCTA--TGCCT 237
consensus_11302#4      GAACCTGGTCGCTGCTGCGTACACGA---AGAACATGG----TACTGGGGCTA--TGCCT 129
consensus_11302#0      GAACCTGGTCGCTGCTGCGTACACGA---AGAACATGG----TACTGGGGCTA--TGCCT 531
consensus_11302#1      GGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCNGCGCCGAGTACCG 242
consensus_11302#3      GGACATGGCCGAACTTGCAATCAAGCTCCAGACCACCGACCCTTCCAGCGCCGAGTACCG 159
                       * ** *** **    ***   *  *    *** **  *    * *  * **    * ** 

consensus_11302#2      CTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCAC 297
consensus_11302#4      CTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTTTACTTTGCAGCAGCCAC 189
consensus_11302#0      CTTGGTCGTCTATGCTCTGCTGTCTGGTGCAGAGCAGCTGTTCTACTTTGCAGCAGCCAC 591
consensus_11302#1      CATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGT 302
consensus_11302#3      CATGATCCTGGAGGAGCTGAAACATGACGTTACACAGCTCATCCTCGTCGTCGTCGCCGT 219
                       * ** ** *  * *  ***     **  *     *****  *   * * *  *  ***  

consensus_11302#2      GGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTAT---GCATACGC 354
consensus_11302#4      GGTGTACTACTGCCAAGCAATGGACAGCAAGGGAGAGGCCATGGATTAT---GCATACGC 246
consensus_11302#0      GGTGTACTGCTGCCAGGCAATGGACAGCAAGGGAGAGCCCATGGATTAT---GCATACGC 648
consensus_11302#1      CGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTC 362
consensus_11302#3      CGAGCTCGTCGCTTTGGTGCTTGGCTTCGTCAATCAGTGCGTCGGCTTCTTCGCGGCCTC 279
                        * *  *  *      *   * * *  *       **  * * *  *     **   * *

consensus_11302#2      CAAGATCCCTACCGGTGAA-GCAAATTGCT-----GATTGGTATGGACAGGAAAGAAAT- 407
consensus_11302#4      CAAGATCCCTACCGGTGAA-GCAAATTGCT-----AATTGGTATGGACAGGAAAGAAAT- 299
consensus_11302#0      CAAGATCCCTACCGGTGAA--CAAATTGCT-----GATTGGTATGGACAGGAAAGAAAT- 700
consensus_11302#1      CTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGG 422
consensus_11302#3      CTCCACCTACTCCGGCGACCGCTACTCGCTCCCGGAGCTCCTCCGCAAGGCGATGAAGGG 339
                       *   * *    **** **   * * * ***        *  *  * *  *  * ***   

consensus_11302#2      -AAGCTTATTAGTATTATTAGTATCTGCGTGT--GTCATTATGCA-TGGTATATATACAT 463
consensus_11302#4      -AAGCTTATTAGTATTATTAGTATCTGCGTGT--GTCATTATGCAATGGTATATATACAT 356
consensus_11302#0      -AAGCTTATTAGTATTATTAGTATCTGCGTGT--GTCATTATGCAATGGTATATATACAT 757
consensus_11302#1      GAATCTCAAGGGTCCTCTCATAACCATCGCCCTGGTCACCGTACTCCGGGTCACATACAT 482
consensus_11302#3      GAATCTCAAGGGTCCTCTCATAACCATCGCCATGGTCACCGTACTCCGGGTCACATACAT 399
                        ** ** *   **  * * *  * *  **     ****   * *   **   * ******

consensus_11302#2      ATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATT--- 520
consensus_11302#4      ATGTATGACATATGCAAAAAAAAAAAAAAAAAAAAAACACTGTCA-TGCCGT-------- 407
consensus_11302#0      ATGTATGACATATGCTATTATGTTGTGTACGACACATGTGTATCACTATTATTAATT--- 814
consensus_11302#1      GGCGCTCCTCGGTGTTCTNATCTATTCCGTCATGCANGTGCAACGGCACTACTTGGATCA 542
consensus_11302#3      GGCGCTCCTCGGTGTTCTAATCTATTCCGTCATGCAAGTGCAACGGCACTACTTGATCAA 459
                            *      **     *           *   *       *                

consensus_11302#2      AGTGATCAAAACTACA-CCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATAT 579
consensus_11302#4      ------------------------------------------------------------
consensus_11302#0      AGTGATCAAAACTACAACCGCTCTTATTGTTATGCTGATCACCACTCGAGTTAGTTATAT 874
consensus_11302#1      GGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCCTCCTCTACTNTCA 602
consensus_11302#3      GGTGCTCTCCGTGCAAGTCCTCCTCTTCGTCCTCTGTTTCCTCGCCTTCCTCTACTTCAA 519
                                                                                   

consensus_11302#2      CATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA 625
consensus_11302#4      ----------------------------------------------
consensus_11302#0      CATTGTGGGCTTCACTCATTCTGAAATATATATTCATTCTACAAAA 920
consensus_11302#1      CGTCNTTGGCATGGTAAGCGTCGC---------------------- 626
consensus_11302#3      CGTCGTTGGCATGGTGAGCGT------------------------- 540
                                                                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)