These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11315#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 2018 fasta sequence [TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGNAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC-AAAAGTACAA-CCCTTACGT-GATTTTC-AAAGGT-GAACAAC-TCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGTCCAAGNTTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG-CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA] [+] EMBL AK101363 [TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGCAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC AAAAGTACAA CCCTTACGT GATTTTC AAAGGT GAACAAC TCCCGGTTCCTATATGGGAACTGCCAGAGGAGAAGGTCCAAGATTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAAGACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAAATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCTAGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGCATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACATCTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGATCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAATAGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATCGATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTGTGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTTGAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATGTGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTT ] [+] EMBL C28749 [ TCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTTTTGACGCTGCGGCCTCTTCCCGACCGCGCA NAAAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTNAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAAGTACAACCCCTTACGTGGATTTTCAAAAGGTGGAACAACTTCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGTCCAAGNTTTTCATGAT ] [+] EMBL C25860 [ CGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGCTGCGGCCTCTTCCCGACCGCGCAGAANAGATTTGAGGTCACCAATGGATGATTCAACGGATGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAGATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAGTGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAGTGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTC AAAAGTACAA CCCTTACGT GATTTTC AAAGGT GAACAAC TTCCGGTTCCTATATGGGGACTGCCAGA GAGGAGGTCC AGGTTTTCATG TAGG ACTTa ] [+] EMBL CB000025 [ TAATTCTGACAGGATGTGGCATGCCAACCCTCCCATCAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACTACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGCTAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTGGGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACGTTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTAC ] [+] EMBL OSR16841A [ GGCAGGACGATTTGTCCGATGTATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTATTCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGTACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAG CCAGTNAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATC ] [+] EMBL BI806489 [ agaGCTTC TTTGA CTATT ATA TTTGGG TT A TA TTTCCAACCCATGTGC TCCGGA ATGATATAC AAGTACGAGAA GCTATGTTCAGGTTCAAGAG ATAGAGCCTCNAGACACTGAAGCCCAGTGAGGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATTATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA] [+] EMBL AU031779 [ CACTGAAN CCAGTGAGGANTGATTTGGAGGACTCTAATCCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTAAAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTCGTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTTCTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGATCGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAGTTATCGTCTAGGTGATCGATCTCTCCTAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTCTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAaaa ] consensusID : consensus_11315#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU183690 [TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCTTTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11315#0 TTCTTGCCTCTCGCTCAGATCCGTTCCTCCGGCGAAAAGCGACGGCGACTTTGTTGACGC 60 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGCGGCCTCTTCCCGACCGCGCAGNAAAGATTTGAGGTCACCAATGGATGATTCAACGGA 120 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGACGATTCGTATCATCCAAGAAAACACTATGCTTATGATCGTCAGGTTTCTTCAAGCAG 180 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ATGGCGTACCAGCCGCGAGTATATCAGAGGTCCCGGCCCCGAAACTCATACTACTGAGAG 240 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGCTCAAGATGGACAGGATCCACCTGCTGGAGTATATTCCTATGGTTATTTTTCTGGCAG 300 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGGTAATGATCCTCAAGTTCAAGGACACTTTGTTCCGGAGATTCAAAAGTACAACCCTTA 360 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 CGTGATTTTCAAAGGTGAACAACTCCCGGTTCCTATATGGGGACTGCCAGAGGAGAAGGT 420 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 CCAAGNTTTTCATGATAGGTACTTTATTGCAAAAGACAAGAGTCGAGTTGAAGCCAGGAA 480 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GACTCTGAATAGGTTGTTAGAGGGGAACATCAATACAATTGAAAGGGGACATGGATATAA 540 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ATTCAATATTCCAAAATATACAGATAACATGGAGTTTAATGAGGAAGTCAAGGTTTCTCT 600 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 AGCAAAAGCAGGCAAGACCATAAGCCGTTCCTTTTGCAATGCGAATCAGCGGGAAGTTGC 660 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ATCTAGGACTGGCTATACCATTGATCTAATAGAACGGACACTTGGGGCTGGATTGAACAT 720 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 CTCGAAGAGAACTGTCTTATACACAAACAAGGATCTGTTTGGGGATCAAAGTAAATCAGA 780 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TCAAGCGATCAATGACATCTGCGCTTTGACAAATATCAGAAGGGGCTCTTTGGGTATAAT 840 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 AGCAGCTGAAAAAGGAATTGTAGTTGGAAACATTTTCCTGGAATTGACAAATGGCAAATC 900 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GATTAGTTGTTCTATTGGAGTGCAGATACCACACAGGCTTGACCAGATCAAAGATGTTTG 960 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGTTGAAATAGGTTCACGCAACATAGAGTATATTCTTGTTGTGGAAAAGCATACAATGTT 1020 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GAATTATCTACTAGAGATGGACTATCACACCAATAACAACTGTATAATTCTGACAGGATG 1080 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TGGCATGCCAACCCTCCAAACAAGGGATTTCCTCAGATTCTTGAAACAACGCACTGGACT 1140 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ACCTGTCTTTGGACTTTGTGATCCAGATCCTGAAGGTATAAGTATTCTTGCTACGTATGC 1200 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TAGAGGGTCTTGCAATTCAGCATATGACAATTTCAATATTTCCGTGCCATCTATTTGTTG 1260 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GGTTGGATTGTCATCCTCAGACATGATAAAGTTGAATTTGTCTGAGACCAACTACTCACG 1320 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TTTGTCTCGCGAGGACAAAACTATGTTGAAGAACCTTTGGCAGGACGATTTGTCCGATGT 1380 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ATGGAAACGCAGAATCGAAGAAATGATAAGTTTTGACAAGAAGGCCTCTTTTGAAGCTAT 1440 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TCATAGTTTGGGGTTTGATTATTTTGCAACCAATTTGCTTCCGGATATGATTAACAAAGT 1500 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 ACGAGAAGGCTATGTTCAGGTTCAAGAGAAAAAAGAGCCTCAAGACACTGAAGCCAGTGA 1560 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GGACTGATTTGGAGGACTCTAATGCAGCTAGAGATTCAGATCCATAAGTTTCTACAAGTA 1620 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 AAAGTTGGAGCAGCAGATTGGAACTGCATGTTGATTTTTGTGGATGCTCAAGCTTCACTC 1680 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 GTATGTTTGGCTTCTGATAAGTCTGTAATAGCTTAGCAGCACAATTATTATAGTTGTCTT 1740 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 CTAGGTGATCGATCTCCTAAATACTTGCACCACTATTATTGTAGTTGTCTTTTATGTGAT 1800 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 CGATCTCCTAAGTACCTTTCTGTCTGTAATAGTTTAGCAACACCATTATTATAGTACTAG 1860 consensus_11315#1 ------------------------------------------------------------ consensus_11315#0 TTATCGTCTAGGTGATCGATCTCTCCTAA-GTGCTTGCACTATTGTTACTGAAGTTGTCT 1919 consensus_11315#1 ------TCTAGGTGATCGATCTCTCCTAAAGTGCTTGCACTATTGTTACTGAAGTTGTCT 54 *********************** ****************************** consensus_11315#0 T-CTAGCACTATTGGTACTGCAGTTGTTTTTTCGCTGATCGAACTTCTAAGTGCGGTATT 1978 consensus_11315#1 TTCTAGCACTATTGGGACTGAAGTTGTTTTTTCGCTGATCGAA-----AAAAAAAAAAAA 109 * ************* **** ********************** ** * consensus_11315#0 ATTGTTAAGAGTAAATTGCAACTTGTGCCCAAAAAAAAAA 2018 consensus_11315#1 AAAANAAAAAAAAAAAAAAAA---------AAAAAAAAA- 139 * ** * *** ** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||