These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11319#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1907 fasta sequence [CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCATCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCCGCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGATCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCGAGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATT-GATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA-GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAAT-GATACTGT-GGGAACCTTAGCT-GGAGCACGTTATTGGGACGATGA-CGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTT-GAAACAGGAAACACGATTATTAACACTGAGT-GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT-GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG-CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT-CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAAATTATCCTCAAAAAAAAAA] [+] EMBL AF372832 [CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCATCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCCGCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGATCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCGAGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATT GATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAAT GATACTGT GGGAACCTTAGCT GGAGCACGTTATTGGGACGATGA CGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTT GAAACAGGAAACACGATTATTAACACTGAGT GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAaaaa ] [+] EMBL AU031754 [ gagaaAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAAAAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGCATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAACGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCTCCTTTCCGGTGAATCAGACTTCTATTGGATTCTGGCATTCTGATCAAGTGGACAAAAGGTTTTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGAGGGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAATGGATACTGTGGGGAACCTTAGCTGGGAGCACGTTATTGGGACGATGACCGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATGCATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTTGGAAACAGGAAACACGATTATTAACACTGAGTGGGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAATGGGATGATGAGAGCATAAATCCTGGTG ACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTG AATTGTCCGTA GGTGCTGGc ] [+] EMBL AK059853 [ GT GGGGAGCTTTCTCAGATGGACTTCCATTGACTGAATTTGACAGAGAAAT GGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGATTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAA ] [+] EMBL AU057562 [ GATGTATCTAGGTGAAATTGTCCGTA GGTGCTGGTCAAGATGGCTGAAGTATCTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACACCACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCTTGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAGTCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCCTTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGATGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGG ] [+] EMBL AU031753 [ CATGAAGGAGGCTGTGGCTGAGCTACTGGGACCCGAGCGATCGAATCGTATCCCCATCGAGCACACGAAAGNCGGATCAGGGATCCGTGCCTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCNCAATTGTTATAATTGTTGAGTTACTGGNCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAGTTTATCCTCAAAAAAAAAA] [+] EMBL AU166654 [ CGAGCGATCGAATCGGATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAATCCCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAAAAAAAAAa ] [+] EMBL AU197800 [ GAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGATCAGGGATCGGCG CTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCTCTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACAAGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAAT CCAAGCATATCATCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTACTACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACNCCAGAAATTTATCAACTTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTCATCAGCTTATGTATTTGTATAGTTAAAAA ] consensusID : consensus_11319#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNNAGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGGA] [+] EMBL AU068608 [CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCCGCTCCCCGTGCTGCGGCGCGTGGCGGACGCATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNNAGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGTTTTATGCTCTGGACCTTGGAGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11319#0 CCCCCTACCAACGATCAGCTCAGCTTCAGCTTCTCCTCGGCATGTCCGCCGCCGCCGCCA 60 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TCGCGTCGCCGATCCCGGCGGCGATCGCCGTCGTGCAGCAGCAGAGGCGGGGGAGGAGCC 120 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 GCGGCGGCGGCTCCGGCGCTGCCGCCGTCCGCTGCTCCGCGGTGGCCCCGACGTCCGCGA 180 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TCGCGCCCATCCTTGCCGACCTGAGGCTGCGGTGCGCCGCCCCGCTCCCCGTGCTGCGGC 240 consensus_11319#1 ----------CNTTGCCGACCTGAGGCTGCGGTGCGCCGCCC-GCTCCCCGTGCTGCGGC 49 * ****************************** ***************** consensus_11319#0 GCGTGGCGGACGCCATGGCCTCCGGGATGCGCGCCGGGCTGGCCGACGACGGCGCCGGCG 300 consensus_11319#1 GCGTGGCGGACGC-ATGGCCTCCGGGATGCGCGCNGGGCTGGCCGACGACGGNGNCGGNN 108 ************* ******************** ***************** * *** consensus_11319#0 AGCTCAAGATGATCCCCAGCCACGTCTACTCACTCCCCACTGGGAATGAAACAGGACTGT 360 consensus_11319#1 AGNTCAAGATGATCNTAAGCCACGTNTACTNACTANTCACTGGGAATNAAACAGGACTGT 168 ** *********** ******** **** *** ********** ************ consensus_11319#0 TTTATGCTCTGGACCTTGGAGGCACCAACTTTAGAGTGCTGAGGGTACAATTGGGAGGAA 420 consensus_11319#1 TTTATGCTCTGGACCTTGGAGGGA------------------------------------ 192 ********************** * consensus_11319#0 AAGATAAGCGCATTATAGATACCGAGTTTGAGCAAGTCTCGATCCCAAGAGAAATCATGC 480 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 ATGGTATAACCGAGGATTTGTTTGATTTCATCGCGAGTGGCCTGTCGAGATTTGTAGCAA 540 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CGGAGGGTGATAAGTTTCATTTGCCACAAGGGAGAAAGAGAGAGTTAGGCTTCACATTCT 600 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CCTTTCCGGTGAATCAGACTTCTATTGATTCTGGCATTCTGATCAAGTGGACAAAAGGTT 660 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TTGCTGTCTCTGGAACTGCTGGGAAAGATGTTGTTGCTTGTCTGAATGCTGCAATGGAGA 720 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 GGCAAGGCCTTGATATGCGTGTCTCTGCCTTGGTAAATGATACTGTGGGAACCTTAGCTG 780 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 GAGCACGTTATTGGGACGATGACGTAATGGTCGCGGTGATTTTGGGCACTGGCACCAATG 840 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CATGCTACATTCAACGAACTGAAGCTATTCCAAAATTGCAACACCTTAAGCTTGAAACAG 900 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 GAAACACGATTATTAACACTGAGTGGGGAGCTTTCTCAGATGGACTTCCATTGACTGAAT 960 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TTGACAGAGAAATGGATGATGAGAGCATAAATCCTGGTGAACAGATATTCGAGAAGACGA 1020 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TTTCCGGGATGTATCTAGGTGAAATTGTCCGTAGGGTGCTGGTCAAGATGGCTGAAGTAT 1080 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CTGATCTCTTTGGTCATTCCTTCCCCAAGAAACTTGCTGAACCATTTGTTCTAAGGACAC 1140 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CACATCTATGCGCTATGCAACAAGACACCTCTGACAATCTTGGAGAAGTTGAGTCCATCT 1200 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TGAGTGATGTCATCGGCGTGTCCCAAGCTTCTCTGCTGGCACGGAGAGTCACTGTAGAAG 1260 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TCTCCGACTGCATCATCAGGAGAGGAGGCCGGTTGGCCGGGGCAGGAATCGTAGGGATCC 1320 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TTGAGAAGATGGAGAATGACTCCAGAGGGCACATTTTCGGACGAAGAACAGTGGTCGCGA 1380 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TGGACGGTGGTCTATATGAGAAGTACCCTCAGTACAGGAGGTACATGAAGGAGGCTGTGG 1440 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CTGAGCTACTGGGACCCGAGCGATCGAATCGTATCGCCATCGAGCACACGAAAGACGGAT 1500 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CAGGGATCGGCGCTGCGCTGTTGGCAGCTGCAAACTCAAAGTATGCTGCTGCTCAAATCT 1560 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 CTACAAGGTGATCGCAATTGTTATAATTGTTGAGTTACTGGGCCGAATTAATTCTCTACA 1620 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 AGGTGATCTCAATTGTTATCATTGTTGAGCTACTGGGACCTGAACAATCCAAGCATATCA 1680 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TCATATGGTGGCCTCTTATCTGAAGTATGGAGGGGCTTCATATATGCTATTCTTCTGTAC 1740 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TACTAGTCTACTATACTATATAACGCATTTGAGGAAAAGAAACACCAGAAATTTATCAAC 1800 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 TTATGTTTTGTATAATTCATCAACTTATGTGTTTGTATAGTTACAGTTCACCAGAAATTC 1860 consensus_11319#1 ------------------------------------------------------------ consensus_11319#0 ATCAGCTTATGTATTTGTATAGTTAAAAATTATCCTCAAAAAAAAAA 1907 consensus_11319#1 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||