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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11320#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1218 fasta sequence
[TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT-GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA-CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG--TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAAATCCTAAACCATAAAAAAGGAAA]
[+] EMBL AK102932 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAA ]
[+] EMBL AK122147 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAGTCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCGCCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAGT TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCT ]
[+] EMBL CB647154 [TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACATCGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGCTCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAAGTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAACTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACC ]
[+] EMBL CB096956 [ GAAGAAAGAAGTTCCTGTGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCCCAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTATGGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAACCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCACCCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGNTAG TTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAAAAAACTGGTGNTTANGNTGGTCAAAG ]
[-] EMBL CB619245 [ GATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCATGCAGAAGCTCAGTCTTCCAAGTGAGACT GAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACGGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATATATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAGTTTTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCCGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGACGTGGTACTAGACTGAAAATTGCTTCCAAATCCTAAACCATAAAAAAGGAAA]
[-] EMBL CB647155 [ GTATATCATGCAGAAGCTCATTCTTCCAAGTGAGACTGGAGGTTGAAATAAGCTGCTGCGGTCAGCCAGTGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTCGCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACGGGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACGATCA CCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCCCCATATATGGGAGGAGGATTTTTTTTTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCATACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAATTTGTTAG TTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGTAGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTAGCTGCTCTTCCCTTGGAAGGGATTAAATTGGCTTCAGTTTTTAGTGGACTGCAGCTTGGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAATTGCTTCCAAATCTTAGGCCATAAgat ]
consensusID : consensus_11320#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTACGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTTGTGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAATCCTAAACCATAAGA]
[+] EMBL BI805574 [TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTACGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTTGTGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAATCCTAAACCATAAGA]
consensusID : consensus_11320#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 136 fasta sequence
[TACGGGCCGGGCCAACAGCGCTGAGTCTTGAAACGAACCATCTTCAGATGTCCCACCAGACGACGATCACCGGATTTNNCAACATATCACCATATATGGGAGGAGGATTCTCTCNCTTCCNCCTCGATGACATATA]
[+] EMBL AA750083 [TACGGGCCGGGCCAACAGCGCTGAGTCTTGAAACGAACCATCTTCAGATGTCCCACCAGACGACGATCACCGGATTTNNCAACATATCACCATATATGGGAGGAGGATTCTCTCNCTTCCNCCTCGATGACATATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11320#0 TGGACAGCTTGAGCAAAGTACCTCAAACAAGAAGACAGGTATTGTCAAATGCGGAAACAT 60
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 CGAGTCATCCCTCCAGTAAAGATAAAGGAGGTGACGATAAGGACTTGGACAAGTCAGAGC 120
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TCTGGAGACCTTTAAATTGTCTTGTAGAGGCTGCAAGCAAAACAAAGTCCTATAGATCAA 180
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 GTTCAGCTGCTAGGGGAAATCAGCCCACTGAATCTCCTAGTAGTGCAAATGCTAGCAGAA 240
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 CTAAGGCTAGGGAGTATCTGCTTAAGTCCAAAGTTCAAGATGAGAAGAAAGAAGTTCCTG 300
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TGGCAACAGTTCCGTTTAAAAGGAAAGGACCTGGCCGGGGGAGGAAACCTGCACAACCCC 360
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 CAGCCGCTGCAGTGTCTAGTCATTCAGCTAGCAAGCATGAAAAATTATTAACCCCTGTAT 420
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 GGTTTTCATTGATTGCATCATTTGACCAGAAAGGTGCTCCACCCTTGCCGCAGATACCAA 480
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 CCCATTATTTGAGAATAAAAGATGACAATATGCCCGCGTCATCCATCCAAAAGTATATCA 540
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TGCAGAAGCTCAGTCTTCCAAGTGAGACTGAGGTTGAAATAAGCTGCTGCGGTCAGCCAG 600
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TGAACCCAATTCAACCCCTGCGCAATTTAATAGAGCGGTGGCTGAGGTTCGGCCCAGCTC 660
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 GCACCTTGCAGACTGTGGTCGGCTCCTCCGGGGGAGACTATGTGATGGTGATATCCTACG 720
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 GGCGGCCAAAGGCCGCATAGTCTTGAAACGAACCATCTTCAGATGTCCCACCTGTCGACG 780
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 ATCACCGGATTTGGCACAAGGTCGTGAAGTTCCGCCACCCGGGAAAACATATCACCATAT 840
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 ATGGGAGGAGGATTCTCTTCTCCCCTGATGACATATACTCAAAAGAAAGCGGCTGTGCCA 900
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TACTCAAAGCTCCCCTTCCCTCCATTGATGCTGTTGAATGCTGCTCCATTCTGGCAGAAT 960
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 TTGTTAGTTTTTTTTTTCGTTCTTGATATACAGGTAAATTTAAAGTTGCTGTAATTTGGT 1020
consensus_11320#1 ------------------------------------------------------------
consensus_11320#2 ------------------------------------------------------------
consensus_11320#0 AGGCGCAGAGAAAACTGGTGTTTAGGTTGGTCAAAGAGAGGATACATAATGTCAGTTTTA 1080
consensus_11320#1 ------------------TGTGTTAGTTGGTCAAAGAGAGGATACATAATGTCAGTTGTA 42
consensus_11320#2 ----------------------------------------------TACGGGCCGGGCCA 14
** * * * *
consensus_11320#0 GCTGCTCTTCCCTTGG-AAGGGATTAAATTGG-CTTCAGTT-TTTAGTGGACTGCAGCTT 1137
consensus_11320#1 -CGGCTCTTCCCTTGGGAAGGGATTAAATTGGGCTTCAGTTGTTTATGGGACNGCAGCTT 101
consensus_11320#2 ACAGCGCTGAGTCTTGAAACGAACCAT------CTTCAGATGTC-------CCACCAGAC 61
* ** ** * * ** * * * ****** * * * *
consensus_11320#0 GGTTGTATCCTGGATTAATGTTAAACTGATGTGGTACTAGACTGAAAAT-TGCTTCCAAA 1196
consensus_11320#1 G-TGGTATCCTGGATTAATGNTAAACTGATGTGGTACTAGACTGAAAATGTGCTTCCAAA 160
consensus_11320#2 GACGATCACCGGATTTNNCAACATATCACCATA-TATGGGAGGAGGATTCTCTCNCTTCC 120
* * ** * ** * * * ** ** * * * *
consensus_11320#0 TCCTAAACCATAAAAAAGGAAA 1218
consensus_11320#1 TCCTAAACCATAAGA------- 175
consensus_11320#2 NCCTCGATGACATATA------ 136
*** * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||