These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 942 fasta sequence [GGAAATGCAACGGCCGCCGCGAAGGNATAGGCGAACACGTCTCCNTNTCCGGGCTGCGCCTTTAACCAGAACACGTGAGCCGGCGGCTATATATCGGCGACCCCATCTGCTTCCGGCGATCGCTAAGGTAATCAGTTTCCGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG-GC-CTG-G-AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA-GGATCT--CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCAC-TTCGCCATCACCAACAAGGAGGAACT-CAAGATC-TGGGACGAGGGC-TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC-TCCCTCTTCAAGATCA-TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCA--AAAAAAAA] [+] EMBL C73235 [GGAAATGCAACGGCCGCCGCGAAGGNATAGGCGAACACGTCTCCNTNTCCGGGCTGCGCCTTTAACCAGAACACGTGAGCCGGCGGCTATATATCGGCGACCCCATCTGCTTCCGGCGATCGCTAAGGTAATCAGTTTCCGAGAGCNAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTAATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAN GC TTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGA ] [+] EMBL AK073278 [ AATCAGTTTCCGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG GCGCTG G AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCAC TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAA ] [+] EMBL C97100 [ AGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGG CGGA NC CTG GNAGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGNA GNGGAGGCGGAGGCGANGGATCT CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCNCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGAAAGATNGCCGAGTACATGAACAAGCACTTTCGNCATCACCAACAAGGAGGAACTNAAAGATCTTGGGACGAGGGCTTTCATCAACGAGNTTTACGGCCACGAGNACAAGTACTTCCTTTTTCAAGATCATTCCGGGCTTCCGAGCG ] [+] EMBL OSC25511 [ AGAGAGAGAGAGAGTTAGGGTTTCGCAAGTAATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAGNGC CTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT CCAAGCTCGTCGGCGACATGATCGACAACNTCTNCNCCGATCACGGGATCCCNCTCCCCAAGGTCGACATA ] [+] EMBL AU063080 [ AGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG NG CTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAG ] [+] EMBL AU082630 [ AGGCGAAGNCGGAGGCGA GGATCT CCAAGTTCGTCGGCGACATGATCGACAAC TCTGCGCCGATCACGGGATCCCGNTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCA TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCATCAAAAAAA ] [+] EMBL AU082625 [ ATCTNCCCAAGCTCGTCGGCGACATGATCGACAAC TCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCA TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAAaaaa ] [+] EMBL AU182529 [ ACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCA AAAAAAAA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||