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Oryza sativa
cluster # 11327 cluster # 11327       Sequences # 8       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11327#0 length = 942 sequences # 8  

consensusID : consensus_11327#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 942
fasta sequence
                              [GGAAATGCAACGGCCGCCGCGAAGGNATAGGCGAACACGTCTCCNTNTCCGGGCTGCGCCTTTAACCAGAACACGTGAGCCGGCGGCTATATATCGGCGACCCCATCTGCTTCCGGCGATCGCTAAGGTAATCAGTTTCCGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG-GC-CTG-G-AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA-GGATCT--CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCAC-TTCGCCATCACCAACAAGGAGGAACT-CAAGATC-TGGGACGAGGGC-TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC-TCCCTCTTCAAGATCA-TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCA--AAAAAAAA]

[+] EMBL C73235               [GGAAATGCAACGGCCGCCGCGAAGGNATAGGCGAACACGTCTCCNTNTCCGGGCTGCGCCTTTAACCAGAACACGTGAGCCGGCGGCTATATATCGGCGACCCCATCTGCTTCCGGCGATCGCTAAGGTAATCAGTTTCCGAGAGCNAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTAATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAN GC TTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK073278             [                                                                                                                                 AATCAGTTTCCGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG GCGCTG G AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT  CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCAC TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAA                     ]
[+] EMBL C97100               [                                                                                                                                               AGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGG   CGGA  NC CTG GNAGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGNA GNGGAGGCGGAGGCGANGGATCT  CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCNCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGAAAGATNGCCGAGTACATGAACAAGCACTTTCGNCATCACCAACAAGGAGGAACTNAAAGATCTTGGGACGAGGGCTTTCATCAACGAGNTTTACGGCCACGAGNACAAGTACTTCCTTTTTCAAGATCATTCCGGGCTTCCGAGCG                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSC25511             [                                                                                                                                                               AGAGAGAGAGAGAGTTAGGGTTTCGCAAGTAATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAGNGC CTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT  CCAAGCTCGTCGGCGACATGATCGACAACNTCTNCNCCGATCACGGGATCCCNCTCCCCAAGGTCGACATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU063080             [                                                                                                                                                                           AGTTAGGGTTTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGGCACGATGGTGCCGGAG NG CTGNG AGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAGGAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGA GGATCT  CCAAGCTCGTCGGCGACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU082630             [                                                                                                                                                                                                                                                                                                                                      AGGCGAAGNCGGAGGCGA GGATCT  CCAAGTTCGTCGGCGACATGATCGACAAC TCTGCGCCGATCACGGGATCCCGNTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCA  TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCATCAAAAAAA ]
[+] EMBL AU082625             [                                                                                                                                                                                                                                                                                                                                                           ATCTNCCCAAGCTCGTCGGCGACATGATCGACAAC TCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAGACCGTCAGGAAGATGGCCGAGTACATGAACAAGCA  TTCGCCATCACCAACAAGGAGGAACT CAAGATC TGGGACGAGGGC TTCATCAACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAAaaaa                 ]
[+] EMBL AU182529             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACGAGCTTGACGGCGACGAGGACAAGTAC TCCCTCTTCAAGATCA TCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCCAGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTCCTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCCTGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGGTGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCCCGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGGATCGCTTGCATGATCGTGAATAATTTTGCTTCCA  AAAAAAAA]


>consensus_11327#0 GGAAATGCAACGGCCGCCGCGAAGGNATAGGCGAACACGTCTCCNTNTCCGGGCTGCGCC TTTAACCAGAACACGTGAGCCGGCGGCTATATATCGGCGACCCCATCTGCTTCCGGCGAT CGCTAAGGTAATCAGTTTCCGAGAGCGAGCGAGAGAGAGAGAGAGAGAGAGAGTTAGGGT TTCGCAAGTGATGGCGACGGGGAACGGAGAGGCCGCGGTGGTGGAGAAGGAGGGAGAGGG CACGATGGTGCCGGAGGCCTGGAGAAGAAGGTGGTGTTGGATGCGGCGGAGAAGGAGGAG GAGGAGAAGGATAGCGAGGCGGAGGCGGAGGCGGAGGCGAGGATCTCCAAGCTCGTCGGC GACATGATCGACAACGTCTGCGCCGATCACGGGATCCCGCTCCCCAAGGTCGACATAAAG ACCGTCAGGAAGATGGCCGAGTACATGAACAAGCACTTCGCCATCACCAACAAGGAGGAA CTCAAGATCTGGGACGAGGGCTTCATCAACGAGCTTGACGGCGACGAGGACAAGTACTCC CTCTTCAAGATCATCCGGGCCTCCGAGCGCGTCGGCTTCTATGGACTCCTCGACCTCGCC AGCGACATGGTCGCCCGCAAGATCAAGGCGGGCAAGGCCATCGACGAGATCCGCAAGTTC CTCGGCGTCGAGAAGGACTTCACCAAGGAGGAGGAGGAGAAGATCCGCCGGGAGAACGCC TGGGCCTTCGAGGAGTAGACACCTGGCTGTTCTTCGTCGTGATTGTTGTTGTTTCGTAGG TGTGTGTTGCGTACTTGCATCTCTGGTAGATTCAGATCGAATCGGGGAGTTCGTGCATCC CGTCCCGTGCAAGAAGAACAGAGTCGATTGGCTGTGTTGTTGAATGCTTTGAACTGCTGG ATCGCTTGCATGATCGTGAATAATTTTGCTTCCAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)