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Oryza sativa
cluster # 11329 cluster # 11329       Sequences # 8       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11329#0 length = 1388 sequences # 5  
consensus_11329#1 length = 612 sequences # 1  
consensus_11329#2 length = 523 sequences # 1  
consensus_11329#3 length = 422 sequences # 1  

consensusID : consensus_11329#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1388
fasta sequence
                              [GCGGCTGGTCGCTTCCCCTTCCGCTTCCCTCCGCCAACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCAAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGC-AATTGAAGCTTTGCACCAAGTTTTTCAAGAATATC-GGATGCCCTTTTTGNG-AGGGTTGTAATTTCTCGCA-TTTTGTCCCTGGGGGGGNT-AAGCAG-TGGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCAGCCGCTATGGGTCCTCCAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTTGATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGCCGAGTAACTGGGGTCAAGCTCT-CAATACGTGA-CCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGG-CAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTA-TAGTAGTTTCATCAGTTGAGGACAGTGGAGTTCATTTTGCCCAAAACTGAGACCCTTGAACAACTTGTTGGATGATGCTACGCTTCTCTGAAAAAAAAAAAAAAAAAAA]

[+] EMBL C74495               [GCGGCTGGTCGCTTCCCCTTCCGCTTCCCTCCGCCAACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCAAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGC AATTGAAGCTTTGCACCAAGTTTTTCAAGAATATCGGGATGCCCTTTTTGNGAAGGGTTGTAATTTCTCGCANTTTTGTCCCTGGGGGGGNT AAGCAGTTGGCAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK121951             [   GCTGGTCGCTTCCCCTTCCGCTTCCCTCCGCCAACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGCAAATTGAAGCCTTGCACCAAGTTTTTCAGCACTATC GGATGCCCTTTTGGCG AGGGTTGTCATTTCTCGCA CTTTGTCCCTGGTGGGTATCAAGCAG TAGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCAGCCGCTATGGGTCCTCCAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTTGATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGCCGAGTAACTGGGGTCAAGCTCT CAATACGTGA CCATGAATCGGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGG CAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTA TAGTAGTTTCATCAGTTGAGGACAGTGGAGTTCATTTTGCCCAAAACTGAGA                                                         ]
[+] EMBL CB643316             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGAACCAGATATGCCGAGTAACTGGGGTCAAGCTCT CAATACGTGA CCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGG CAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCC                                                                                                                                                  ]
[+] EMBL BM418677             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AACT GGGTCAAGCTCTNCAATACGTGACCCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGGCCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTACTAGTAGTTTCATCAGTTGAGGACAaaaaa                                                                                ]
[+] EMBL CA756801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTTCGCTCGTGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGCAAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTA TAGTAGTTTCATCAGTTGAGGACAGTGGAGTTCATTTTGCCCAAAACTGAGACCCTTGAACAACTTGTTGGATGATGCTACGCTTCTCTGAAAAAAAAAAAAAAAAAAA]


>consensus_11329#0 GCGGCTGGTCGCTTCCCCTTCCGCTTCCCTCCGCCAACCACGAGCTAGGGTTTCGATCTC GCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGG AGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCAAACGGAGGCGCCGCCG GAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGCAATTGAAGCT TTGCACCAAGTTTTTCAAGAATATCGGATGCCCTTTTTGNGAGGGTTGTAATTTCTCGCA TTTTGTCCCTGGGGGGGNTAAGCAGTGGCAAAAACACTCAATCTAGGCAACCCAGCTGTG CCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCT TCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGAC AAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAG AGTGCCATGGCTCCTCCTATGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCA GCCGCTATGGGTCCTCCAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTT GATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGC CGAGTAACTGGGGTCAAGCTCTCAATACGTGACCATGAATCAGATTCAAACCTGAAGAAC ATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTC ATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCA GCACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAG AACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAAC GAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTC TCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATT GCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAAGAAGC AAATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAGCTCCCTCTTTCAGTATCTTCA CCCTCACTTTATTCATCTATAGTAGTTTCATCAGTTGAGGACAGTGGAGTTCATTTTGCC CAAAACTGAGACCCTTGAACAACTTGTTGGATGATGCTACGCTTCTCTGAAAAAAAAAAA AAAAAAAA



consensusID : consensus_11329#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence
                              [CAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTTGATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGCCGAGTAACTGGGGTCAAGCTCTCAATACGCGACCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATTTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTTTAAGAAGCAGATAACTTAGTTTAAAAAAAAAAAAAA]

[-] EMBL CF277838             [CAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTTGATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGCCGAGTAACTGGGGTCAAGCTCTCAATACGCGACCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTGAGAGCCGAAACGCATTTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTTTAAGAAGCAGATAACTTAGTTTAAAAAAAAAAAAAA]


>consensus_11329#1 CAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTTGATGCCTCGCTTGCTG GTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGCCGAGTAACTGGGGTCA AGCTCTCAATACGCGACCATGAATCAGATTCAAACCTGAAGAACATTGAGCTCGAAGGCA ATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTCATTGCAACAATCAGCC CGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAG GCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAA CCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCG CTGCTTGAGAGCCGAAACGCATTTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTG ACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTATTGCGATTTTCTATATGG ATTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTTTAAGAAGCAGATAACTTAGTTTAA AAAAAAAAAAAA



consensusID : consensus_11329#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [ACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGCACTATCGGATGCCCTTTTGGCGAGGGTTGTCATTTCTCGCACTTTGTCCCTGGTGGGTATCAAGCAGTAGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCAGCCGCTATGGGTCCTCC]

[+] EMBL CF277839             [ACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGCACTATCGGATGCCCTTTTGGCGAGGGTTGTCATTTCTCGCACTTTGTCCCTGGTGGGTATCAAGCAGTAGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCAGCCGCTATGGGTCCTCC]


>consensus_11329#2 ACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTC CCTCCGCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGG ACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCGAGAGCACTATCGGATGCCCTTT TGGCGAGGGTTGTCATTTCTCGCACTTTGTCCCTGGTGGGTATCAAGCAGTAGCAAAAAC ACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAAGAGCTCCTATGGATCATGCTGC TGGTGGTAATTCTCATCCAGCTTCTTCTGGCAAGACACGCATGTGCACCAAGTATAACAC TGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGG CAAGCCAGCTTACATGTCCCATGAGAGTGCCATGGCTCCTCCTATGGGGTGGTCGATATG GAGGCCGACCTGAACCACCTCCACCAGCCGCTATGGGTCCTCC



consensusID : consensus_11329#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence
                              [AGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTNANAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTANNACNATTTTCTATATGGACTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAANAAGCAAATAACTTAGTCTTTNTGGGGTGTATGCCAGTGTANAGCTCCCTCTTTCAGTAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU172866             [AGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAGGGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAGGGCGCTGCTTNANAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTANNACNATTTTCTATATGGACTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAANAAGCAAATAACTTAGTCTTTNTGGGGTGTATGCCAGTGTANAGCTCCCTCTTTCAGTAAAAAAAAAAAAAAAAAAAAA]


>consensus_11329#3 AGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCAGCACCAGCAGGC CGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCGAGAACTTCGTGAAG GGAACCTGCACGTTCGGCGACCGATGCCACTTCGCTCATGGCGAGAACGAGCAGCGGAAG GGCGCTGCTTNANAGCCGAAACGCATCTTGGGCGCGGCGCACTAATTCTCCATTGCCTTT TGTGACTATATATATCTCTGCATCTTTAGGTGATTAGCCTGTTGTANNACNATTTTCTAT ATGGACTGTTACGTTTTCGGTTCAGCTTTTGATAGATGTCTAANAAGCAAATAACTTAGT CTTTNTGGGGTGTATGCCAGTGTANAGCTCCCTCTTTCAGTAAAAAAAAAAAAAAAAAAA AA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GCGGCTGGTCGCTTCCCCTTCCGCTTCCCTCCGCCAACCACGAGCTAGGGTTTCGATCTC 60
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GCCCCCGACCGGCTTCCCCTCCCTTCCCTCCTCCTCCCTCCGCGCGAAGGCTCGCCATGG 120
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      AGGGAGCCGGCGCCGCCCGCAAGAGATCCCGGCCGGACACGGCAAACGGAGGCGCCGCCG 180
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GAGGGAAGCGCTCGAGAGAAACGGAGTCATTTCAAACTGGTCTATCAAGCAATTGAAGCT 240
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      TTGCACCAAGTTTTTCAAGAATATCGGATGCCCTTTTTGNGAGGGTTGTAATTTCTCGCA 300
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      TTTTGTCCCTGGGGGGGNTAAGCAGTGGCAAAAACACTCAATCTAGGCAACCCAGCTGTG 360
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      CCTGCACCGGCAAGAGCTCCTATGGATCATGCTGCTGGTGGTAATTCTCATCCAGCTTCT 420
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      TCTGGCAAGACACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGAC 480
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      AAGTGCCATTTCGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAG 540
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      AGTGCCATGGCTCCTCCTATGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCA 600
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ----------------CAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTT 44
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GCCGCTATGGGTCCTCCAGCAGGAAACTTTGGTGCATCTGCTACTGCCAAGATCAGCGTT 660
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      GATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGC 104
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GATGCCTCGCTTGCTGGTGGCATAATTGGGAAGGGTGGAGTCAACACGAAGCAGATATGC 720
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      CGAGTAACTGGGGTCAAGCTCTCAATACGCGACCATGAATCAGATTCAAACCTGAAGAAC 164
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      CGAGTAACTGGGGTCAAGCTCTCAATACGTGACCATGAATCAGATTCAAACCTGAAGAAC 780
consensus_11329#2      ------------------------------------------------------------
                                                                                   

consensus_11329#1      ATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTC 224
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      ATTGAGCTCGAAGGCAATTTCGACCAGATAAAGCAGGCAAGCAACATGGTGGGTGAGCTC 840
consensus_11329#2      ---------------------ACCACGAGCTAGGGTTTCGATCTCGCCCCCGACCGGCTT 39
                                                                                   

consensus_11329#1      ATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCA 284
consensus_11329#3      ------------AGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCA 48
consensus_11329#0      ATTGCAACAATCAGCCCGAGCACACCAGCCAAGAAACCCGCTGGTTCAGCAGCAGGAGCA 900
consensus_11329#2      CCCCTCCCTTCCCTCCTCCTCCCTCC-GCGCGAAGGCTCGCCATGGAGGGAGCCGGCGCC 98
                                     **    * * ** **    *  * ***       * *** ** ** 

consensus_11329#1      GC--ACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCG 342
consensus_11329#3      GC--ACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCG 106
consensus_11329#0      GC--ACCAGCAGGCCGAGGCGGCCCCGGGGGCAGGAGCAACTACAAGACCAAGCTGTGCG 958
consensus_11329#2      GCCCGCAAGAGATCCCGGCCGGACACGGCCAACGGAGGCGCCGCCGGAGGGAAGCGCTCG 158
                       **   * **    **  * *** * ***     ****   *  *  **   *   *  **

consensus_11329#1      AGAACTTCGTGAAGGGAACCT---GCACGTTCGGCGACCGATGCCACTTCGCTCATGGCG 399
consensus_11329#3      AGAACTTCGTGAAGGGAACCT---GCACGTTCGGCGACCGATGCCACTTCGCTCATGGCG 163
consensus_11329#0      AGAACTTCGTGAAGGGAACCT---GCACGTTCGGCGACCGATGCCACTTCGCTCATGGCG 1015
consensus_11329#2      AGAGCACTATCGGATGCCCTTTTGGCGAGGGTTGTCATTTCTCGCACTTTGTCCCTGGTG 218
                       *** *    *     *  * *   **  *    *  *    *  ***** *  * *** *

consensus_11329#1      AGAA-CGAGCAGCGG-AAGGGCGCTG---CTTGAGAGCCGAAACGCATTTTGGGCGC--G 452
consensus_11329#3      AGAA-CGAGCAGCGG-AAGGGCGCTG---CTTNANAGCCGAAACGCATCTTGGGCGC--G 216
consensus_11329#0      AGAA-CGAGCAGCGG-AAGGGCGCTG---CTTGAGAGCCGAAACGCATCTTGGGCGC--G 1068
consensus_11329#2      GGTATCAAGCAGTAGCAAAAACACTCAATCTAGGCAACCCAGCTGTGCCTGCACCGGCAA 278
                        * * * *****  * **   * **    **    * ** *   *    *    **    

consensus_11329#1      GCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTA 512
consensus_11329#3      GCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTA 276
consensus_11329#0      GCGCACTAATTCTCCATTGCCTTTTGTGACTATATATATCTCTGCATCTTTAGGTGATTA 1128
consensus_11329#2      GAGCTCCTATGGATCAT-GCTGCTGGTGGTAATTCTCATC-CAGCTTCTTCTGGCAAGAC 336
                       * ** *  **    *** **   * ***   **    *** * ** ****  **  *   

consensus_11329#1      GCCTGT-TGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTT-----CAGCTTTT 566
consensus_11329#3      GCCTGT-TGTANNACNATTTTCTATATGGACTGTTACGTTTTCGGTT-----CAGCTTTT 330
consensus_11329#0      GCCTGT-TGTATTGCGATTTTCTATATGGATTGTTACGTTTTCGGTT-----CAGCTTTT 1182
consensus_11329#2      ACGCATGTGCACCAAGTATAACACTGCAGAAGGCTGCAAATTTGGTGACAAGTGCCATTT 396
                        *   * ** *       *  *  *   **  * * *   ** ***         * ***

consensus_11329#1      GATAGATGTTTAAGAAGCA---GATAACTTAGTTTAAAAAAAAAAAAAA----------- 612
consensus_11329#3      GATAGATGTCTAANAAGCA---AATAACTTAGTCTTTNTGGGGTGTATGCCAGTGTANAG 387
consensus_11329#0      GATAGATGTCTAAGAAGCA---AATAACTTAGTCTTTCTGGGGTGTATGCCAGTGTAGAG 1239
consensus_11329#2      CGCCCATGGTGAGAGGGAACTTGGCAAGCCAGCTTACATGTCCCATGAGAGTGC-CATGG 455
                            ***   *    * *      **   **  *                         

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      CTCCCTCTTTCAGTAAAAAAAAAAAAAAAAAAAAA------------------------- 422
consensus_11329#0      CTCCCTCTTTCAGTATCTTCACCCTCACTTTATTCATCTATAGTAGTTTCATCAGTTGAG 1299
consensus_11329#2      CTCCTCCTATGGGGTGGTCGATATGGAGGCCGACCTGAACCACCTCCACCAGCCGCTATG 515
                                                                                   

consensus_11329#1      ------------------------------------------------------------
consensus_11329#3      ------------------------------------------------------------
consensus_11329#0      GACAGTGGAGTTCATTTTGCCCAAAACTGAGACCCTTGAACAACTTGTTGGATGATGCTA 1359
consensus_11329#2      GGTCCTCC---------------------------------------------------- 523
                                                                                   

consensus_11329#1      -----------------------------
consensus_11329#3      -----------------------------
consensus_11329#0      CGCTTCTCTGAAAAAAAAAAAAAAAAAAA 1388
consensus_11329#2      -----------------------------
                                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)