These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1735 fasta sequence [ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGGCTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGGTGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGCCGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCATCATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGCAGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTACAAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGGCCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATTTTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTTTCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAGCGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATCGTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGACTGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGATCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGCTTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGTTCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTCGTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTGATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCATTGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGCTCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCGAGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATGTGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGTTACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGATTGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTTCATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGCTGCTTCTCCAGGGGGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACAGGCGGGCGACGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTCAGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTTAGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG] [+] EMBL AK109891 [ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGGCTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGGTGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGCCGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCATCATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGCAGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTACAAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGGCCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATTTTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTTTCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAGCGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATCGTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGACTGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGATCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGCTTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGTTCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTCGTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTGATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCATTGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGCTCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCGAGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATGTGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGTTACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGATTGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTTCATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGCTGCTTCTCCAGGGGGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACAGGCGGGCGACGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTCAGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTTAGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG] consensusID : consensus_1134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence [TTTGAACCATATGAGGTTGCAGAACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATGTCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGTTGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTTTGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTTCCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGCTGCTTCTCCAGGGAGGGAGAGATGTCATGTGGGACTTCAATACCAGCGCCGCCGCCGCAGGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCTTTTGGATTGGAGTTTGTTATGGAGTTTGTTAGTTTTTATCTCTTGGTTTGTTAGGACTTTATCCCTTAGTTATGCATATTCTGTACGTGAGTTTAGTTGGAATCAATCAATCAAGTTC] [+] EMBL AK059506 [TTTGAACCATATGAGGTTGCAGAACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATGTCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGTTGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTTTGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTTCCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGCTGCTTCTCCAGGGAGGGAGAGATGTCATGTGGGACTTCAATACCAGCGCCGCCGCCGCAGGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCTTTTGGATTGGAGTTTGTTATGGAGTTTGTTAGTTTTTATCTCTTGGTTTGTTAGGACTTTATCCCTTAGTTATGCATATTCTGTACGTGAGTTTAGTTGGAATCAATCAATCAAGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1134#0 ACAAGCCGGGAACAACAAACGTGGTGGCAGACGCCCTCTCCAGAAGGGACGAACACCTGG 60 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 CTGAAGCTCTCGCCTTGTCAGCCCCTCAGTTCTCTCTGTTTGATGAGCTGCGGCACGAGG 120 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TGCTCACGTCGCCCGAGCTGACTGCCATTCGGGATGACATTGCCAAGGGGTCAAAACCGC 180 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 CGGCCTGGGCGTTCACGGACGGCCTCATCACGTTCAAAGGCCGTATCTTTGTGTCTGCAT 240 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 CATCACCATCCTTGCCGGCCATCCTCGAACTGGCACACGGCCTGGGGCACGAGGGCACGC 300 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 AGAATACGCTCTCTCGCCTCCGAGCTGACTTCCACCTCGCACGGGACAGGGCGGTGGTAC 360 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 AAGAGCATGCCCGAGCCTGTTTCACGTGTCAGCAAAACAAGACGGAGCACCTACAACCGG 420 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 CCGGCCTCTTGCAATCCTTGCCGGTGCCATCGGCGGTGTGGGCTGACATCGCCATGGATT 480 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TTGTGGAGGGTCTGCCACGCGTCCATGGCAAGACGGTCATCTTAACGGTGGTGGACCGTT 540 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TCTCCAAGTTTGCCCACTTTATACCAATGGCTCATCCCTACACGGCAACCTCGGTGGCAG 600 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 CGGCCTTCTTCTCGGAAATTGTTCGTCTGCATGGTGTTCCAGCTTCTATTGTCAGTGATC 660 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 GTGATCCGGTCTTCACCAGCACTTTCTGGCGGGAGTTGTTCAGATTGGCCGGAGTACGAC 720 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TGAACTTGTCGTCGGCATTTCATCCTCAGTCTGACGGTCAGTCCGAGGTGACGAACAAGA 780 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TCATTGCGATGTATCTCCGTTGTCTTACCGGCGATCGGCCGCGGCACTGGCTACGGTGGC 840 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TTCCATGGGCAGAGTACTGCTACAACACGTCCTACCAGTCATCTCTTCGCACGTCGCCGT 900 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TCCGTGTGGTTTATGGCCGTGAGCCGCCTACGCTGCGCGCCTATGAACCGGGATCCACTC 960 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 GTCTGCTGGCAGTCCAACAGGCGATGCAAGATCGAGATGAATTTTTGCGTGAGATTCGTG 1020 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 ATCGCCTGGAGCAAGCGCAGCAGACACACAAGTCGGCGTATGATGGCAAGCATCGGGCAT 1080 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TGGAATTCAGTGTGGGCGACTGGTTGTGGCTTCGTTTGCTCCATCGCCCGATTGCTTCGC 1140 consensus_1134#1 ------------------------------------------------------------ consensus_1134#0 TCGGGGTCACCGGCCGTGGTAAGTTGGGGCCTAAATTTTACGGGCTGTACAGGGTTGCCG 1200 consensus_1134#1 --------------------------------------TTTGAACCATATGAGGTTGCAG 22 * * * ** ****** * consensus_1134#0 AGCGGATTGGTTCTGTGGCATATCGTCTTCAGCTTCCTCCGGGTGCTCGCTTGCATGATG 1260 consensus_1134#1 AACGTATTGGCTCTGTGGCTTATCGTCTTCTTCTTCCGCCGGGTGCTTGGTTGCACAATG 82 * ** ***** ******** ********** ***** ********* * ***** *** consensus_1134#0 TGTTTCACGTGAGGTTGTTGAAGCCATTTTGTGGAACTCCGCCGGATTCTGTTCCACCGT 1320 consensus_1134#1 TCTTCCATGTGGGTCTGCTGAAGCCTTTTCGAGGAGTACCGCCAGCTTCGGTACCGCCGT 142 * ** ** *** * ** ******* *** * *** ***** * *** ** ** **** consensus_1134#0 TACCGCCCATTCAACACGGCCAAGTGTGTTTGCAGCCTGCTGCAGTTACGCAGAGTCGAT 1380 consensus_1134#1 TGCCACCAACTCAACATGGGGAAGTTTGTCTCCAGCCGGCGTTGGTTTTGCAGAGTCGTT 202 * ** ** * ****** ** **** *** * ***** ** *** ********* * consensus_1134#0 TGGCTCGTGGAGTTCGTCAAGTTCTTGTTCAGTGGAAGGATAAGCCTTCTGCCGAAGCTT 1440 consensus_1134#1 TGGCCCGTGGCGTTCGTGAAGTTTTGGTTCAGTGGAAAGACAAGCCAGCTGCGGATGCTT 262 **** ***** ****** ***** * *********** ** ***** **** ** **** consensus_1134#0 CATGGATGCCTTTGGATGAATTTCGCACTCTTCATCCGGATTTTCAGCTCGAGGACGAGC 1500 consensus_1134#1 CCTGGATGGCGCTGGATGATTTTCGGTCCTGGTACCCAGATTTTCAGCTTGAGGACGAGC 322 * ****** * ******* ***** * * ** *********** ********** consensus_1134#0 TGCTTCTCCAGGG-GGGAGAGATGTCATGTGGGGATTGCAATACAAGCGTCGCAGCAACA 1559 consensus_1134#1 TGCTTCTCCAGGGAGGGAGAGATGTCATGTGGG-ACTTCAATACCAGCGCCGCCGCCGCA 381 ************* ******************* * * ****** **** *** ** ** consensus_1134#0 GGCGGGCGA-CGGCAAGGCGTGACGAGGAATAGTTTTTTACTTCTGTTTTGATTCGGTTC 1618 consensus_1134#1 GGTCTCCTAGCGCCAATGCGTGACGGCAAACTGTTTCGTTTTCCT-------TTTGGATT 434 ** * * ** *** ******** ** **** * * ** ** ** * consensus_1134#0 AGAGTTTGTTAGATAGTTTGTTAGTTTCTTATTCCGTAAGTTGTTAGGAGTCTATCCTTT 1678 consensus_1134#1 GGAGTTTGTTATGGAGTTTGTTAGTTT-TTATCTCTTGGTTTGTTAGGACTTTATCCCTT 493 ********** ************* **** * * ********* * ***** ** consensus_1134#0 AGAATTGCTATATAATCTGTAAGACAGTTTGGTTTTGGAATCAATCAATTACGTGAG 1735 consensus_1134#1 AGTTATGC---ATATTCTGTACGTGAGTTTAGTT--GGAATCAATCAATCAAGTTC- 544 ** *** *** ****** * ***** *** ************* * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||