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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1652 fasta sequence
[GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCCGGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGCGCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGCGCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGCCCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGGAGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCGCCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGCTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC-TTCTT-GATTATGGATTT-GT-AATAACATCAAATTCGTATGATCAAGT-GGAAC-TG-AGCTAT-GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA-GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT-GGGCGCTTATT-GGCTGCTTTAAGGGTTATTATTGCAGCTGA-TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC-----AAAAAAAAAAAA]
[+] EMBL AK121645 [GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCCGGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGCGCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGCGCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGCCCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGGAGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCGCCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGCTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCA ]
[+] EMBL AU057717 [ TTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTTGGATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATTGGGCTG ]
[+] EMBL AU057485 [ TTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGTGGGAAC TGNAGCTATGGATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCAGGGAGTTTCTTCGCC ]
[+] EMBL AU101720 [ GGTAACACTGAACTATGGTTGCTNCCCTAATGATTTCTTCC TTCTT GATTATNGATTT GT AATNACATCAAATTCGTATGATCAAGT GGNAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTNGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAA ]
[+] EMBL AU093131 [ CTTCCTTTCTT GATTAANGATTTGGTAAATACCTTCAAATTCGTATGATCAAGT GGAACNTG AGCTAT GATGNAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGNACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCCTGTTTAACAAAAAA ]
[-] EMBL CA763326 [ CTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTGGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCAAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAACGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATTTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAAAAAAAAA]
[+] EMBL AU095649 [ TCCAGAAATAGTAGATGGGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGANCCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAA ]
consensusID : consensus_11345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence
[CCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGCGNGGGCGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCTCGNTCGCGCGCANCGGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGNTTCCTTCTCGAGTTTGA]
[+] EMBL C28891 [CCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGCGNGGGCGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCTCGNTCGCGCGCANCGGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGNTTCCTTCTCGAGTTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11345#0 GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGC 60
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCC 120
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGC 180
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGC 240
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGC 300
consensus_11345#1 ------------------------------------------------CCACTGCTCTGC 12
* * * **
consensus_11345#0 CCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGG 360
consensus_11345#1 TCTTCGCGCG------CCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGC-GNGGG 65
** **** * * *** ** ** * ** * * ******** ** * ***
consensus_11345#0 AGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCG 420
consensus_11345#1 CGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCT 125
*** * ** * * ** * * ***** ***** ****
consensus_11345#0 CCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGA 480
consensus_11345#1 CGNTCGC----GCGCANCG------------GTGCAGCTAGCGGACCAAGTACCTGAGGA 169
* * * **** ** *****************************
consensus_11345#0 ACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTT 540
consensus_11345#1 ACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTT 229
************************ ***********************************
consensus_11345#0 CTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGG 600
consensus_11345#1 CTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGG 289
********************** ******* *****************************
consensus_11345#0 GGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCG 660
consensus_11345#1 GGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCG 349
************************************************************
consensus_11345#0 CTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGA 720
consensus_11345#1 NTTCCTTCTCGAGTTTGA------------------------------------------ 367
*****************
consensus_11345#0 TCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGC 780
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 ATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATAT 840
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCC 900
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACT 960
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GAACTATGGTTGCTACCCTAATGATTTCTTCCTTCTTGATTATGGATTTGTAATAACATC 1020
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 AAATTCGTATGATCAAGTGGAACTGAGCTATGATGGAACTCTCCTAGATGCTGCTAGCAT 1080
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GGCAGCAGGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTT 1140
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 GTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGA 1200
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 AATAGTAGATGGGCGCTTATTGGCTGCTTTAAGGGTTATTATTGCAGCTGATCCGGACGC 1260
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCC 1320
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 AGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACA 1380
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 CTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTAC 1440
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAA 1500
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACG 1560
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAA 1620
consensus_11345#1 ------------------------------------------------------------
consensus_11345#0 TAAAGCCCCAAATTTTGTCCAAAAAAAAAAAA 1652
consensus_11345#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||