These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11345#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1652 fasta sequence [GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCCGGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGCGCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGCGCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGCCCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGGAGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCGCCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGCTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC-TTCTT-GATTATGGATTT-GT-AATAACATCAAATTCGTATGATCAAGT-GGAAC-TG-AGCTAT-GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA-GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT-GGGCGCTTATT-GGCTGCTTTAAGGGTTATTATTGCAGCTGA-TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC-----AAAAAAAAAAAA] [+] EMBL AK121645 [GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCCGGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGCGCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGCGCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGCCCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGGAGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCGCCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGCTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCA ] [+] EMBL AU057717 [ TTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTTGGATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATTGGGCTG ] [+] EMBL AU057485 [ TTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGATCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGCATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATATGTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCCTGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACTGAACTATGGTTGCTACCCTAATGATTTCTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTCGTATGATCAAGTGGGAAC TGNAGCTATGGATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCAGGGAGTTTCTTCGCC ] [+] EMBL AU101720 [ GGTAACACTGAACTATGGTTGCTNCCCTAATGATTTCTTCC TTCTT GATTATNGATTT GT AATNACATCAAATTCGTATGATCAAGT GGNAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTNGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAA ] [+] EMBL AU093131 [ CTTCCTTTCTT GATTAANGATTTGGTAAATACCTTCAAATTCGTATGATCAAGT GGAACNTG AGCTAT GATGNAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGNACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCCTGTTTAACAAAAAA ] [-] EMBL CA763326 [ CTTCC TTCTT GATTATGGATTT GT AATAACATCAAATTGGTATGATCAAGT GGAAC TG AGCTAT GATGGAACTCTCCTAGATGCTGCTAGCATGGCAGCA GGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTTGTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGAAATAGTAGAT GGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGA TCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCAAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAACGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATTTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAAAAAAAAA] [+] EMBL AU095649 [ TCCAGAAATAGTAGATGGGGCGCTTATT GGCTGCTTTAAGGGTTATTATTGCAGCTGANCCCGGACGCTGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCCAGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACACTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTACTGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAATCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACGTTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAATAAAGCCCCAAATTTTGTCC AAAAA ] consensusID : consensus_11345#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 367 fasta sequence [CCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGCGNGGGCGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCTCGNTCGCGCGCANCGGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGNTTCCTTCTCGAGTTTGA] [+] EMBL C28891 [CCACTGCTCTGCTCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGCGNGGGCGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCTCGNTCGCGCGCANCGGTGCAGCTAGCGGACCAAGTACCTGAGGAACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTTCTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGGGGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCGNTTCCTTCTCGAGTTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11345#0 GCCCGTCGTCTCTTCCAGGCTTCAAGCCATCTCCACCCCCAACCAACCCCACTGCTCTGC 60 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TCTTCGCGCGCCTCCACCGCCGAACCCCATGGCCGCCGCCGCCGCCGCGGGGGCGACGCC 120 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GGCGACGGCGAGGAAGGCCCTGCTCACAACAACCGCCACCCTCCTCTCCTCCTCGCTCGC 180 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GCGCAGCCGGCGCAGCCTCTCCTGCTCCGCGGCCGCTGCCTCCGCCGCCCCGCGCATCGC 240 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GCCTCAGCCGCCGGACCTGCTCCGATGGGTGCAGCGGGAGGGAGGGTTCGTGCACCCCGC 300 consensus_11345#1 ------------------------------------------------CCACTGCTCTGC 12 * * * ** consensus_11345#0 CCTCCGCGTGGTCGACCATCCTGAGCACGGCCTCGGGGTCTCCGCCGCCGCGGCCGAGGG 360 consensus_11345#1 TCTTCGCGCG------CCTCCACCGCCGAACCCCATGGCCGCNGCCGCCGCCGC-GNGGG 65 ** **** * * *** ** ** * ** * * ******** ** * *** consensus_11345#0 AGACATTCCCCCTGGCGACGTCCTCATCGCGCTACCCGGCCGCCTCCCTCTACGACTCCG 420 consensus_11345#1 CGACGCCGGCGACGGANGNGAAGGCCCTGCTCACAACAACCGCCACCCTCCTATCCTCCT 125 *** * ** * * ** * * ***** ***** **** consensus_11345#0 CCGCCCCGCCGGCGCTGCGGACGCGGTCCTCGTGCAGCTAGCGGACCAAGTACCTGAGGA 480 consensus_11345#1 CGNTCGC----GCGCANCG------------GTGCAGCTAGCGGACCAAGTACCTGAGGA 169 * * * **** ** ***************************** consensus_11345#0 ACTATGGGCTATGCGACTGGGCTTGAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTT 540 consensus_11345#1 ACTATGGGCTATGCGACTGGGCTTNAGGCTGCTTCAAGAAAGGGCAAAATCTGATTCTTT 229 ************************ *********************************** consensus_11345#0 CTGGTGGCCATATATCGCAAATCTGCCAGAGACTTTTACTGTACCGATATTTTTTCCAGG 600 consensus_11345#1 CTGGTGGCCATATATCGCAAATNTGCCAGANACTTTTACTGTACCGATATTTTTTCCAGG 289 ********************** ******* ***************************** consensus_11345#0 GGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCG 660 consensus_11345#1 GGAAGACATAAAAAACTTGCAGTATGCCCCTCTTCTCCACCAGGTGAATAAAAGGTGTCG 349 ************************************************************ consensus_11345#0 CTTCCTTCTCGAGTTTGAAAAAGAAGTGAAACATAAGCTTGGTACAGTGCCCTTGGAAGA 720 consensus_11345#1 NTTCCTTCTCGAGTTTGA------------------------------------------ 367 ***************** consensus_11345#0 TCATCCTTTTTGTGGACAAGATGTAAACTCATCTTCCCTTGGATGGGCTATGTCAGCAGC 780 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 ATCTACTCGGGCATTCCGTTTGCATGGTGAAATCCCAATGCTGTTGCCTCTTATTGATAT 840 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GTGTAACCATAGTTTTAACCCAAATGCTAGGATTGTCCAGGAAGGAAATGTGGATAGCCC 900 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TGATATGTCAGTTAAGGTTGTTGCTGAGACAAAAATTGATCAAAATGCTGCGGTAACACT 960 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GAACTATGGTTGCTACCCTAATGATTTCTTCCTTCTTGATTATGGATTTGTAATAACATC 1020 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 AAATTCGTATGATCAAGTGGAACTGAGCTATGATGGAACTCTCCTAGATGCTGCTAGCAT 1080 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GGCAGCAGGAGTTTCTTCGCCTAACTTTTCAGCTCCAGCCAAGTGGCAACAGGATATCTT 1140 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 GTCACAGCTAAATCTGTATGGAGAGGGTGCTATTCTAAAGGTCAGCATAGGAGGTCCAGA 1200 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 AATAGTAGATGGGCGCTTATTGGCTGCTTTAAGGGTTATTATTGCAGCTGATCCGGACGC 1260 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TGTGAGTGGCCATGACCTCAAGACTTTGATGTCTCTTAAGGAGAAAGCTCCATTAGGCCC 1320 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 AGCTGTTGAAGCTTCAGCACTCCGAACTGTCCTTGCACTTTGCACCTTTGCTCTACAACA 1380 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 CTTCCACACGAAGATAATGGAAGACGAGGCCATACTAAAAGGAGAACCACCTCTTACTAC 1440 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TGAACTAGCCGTGCAGTTTAGATTGCAGAAGAAGCTGCTTCTCCTGGATGTGATACAGAA 1500 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TCTTAGTCGCAGAATCAAGATGCTAGCTCTAGACAAATCCACCGTGTAGGATTTTTCACG 1560 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TTTTGGAATTGCTTTCTCGGACAATCAATTACCCTATTGTACTGATTCTGGAGATGACAA 1620 consensus_11345#1 ------------------------------------------------------------ consensus_11345#0 TAAAGCCCCAAATTTTGTCCAAAAAAAAAAAA 1652 consensus_11345#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||