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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11352#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1459 fasta sequence
[CCACGTGATTTCCTCTCCCAAATCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGTCAGTGATTCTAACCCTTCACTTCCTACCTACTGCTCCGTCCAAAAAAAAAAGAAAAAAAACTCTAATTATGAATCTAGACACGTATATGTCTAGATTCGTAGTTAGAATTGGATTTTTTTTTTTTGGACGGAGAGGTAAACAGCTAGTAGTATCTCAATCTGCTAGCTCTATCCGCCGCCTCGCTCGATCTCGGCGTTCGCGCGCACCGCACGCCGGCCTGAATGGCTCCAAGGGAAGGGAACTCCTCTTCTCTCTCTCTCTCTGAAAATATACTTAGATTATAATATAATTCACTTTGCAGGTTTTTATTTTTTCGAACCGCTTTTATTTTATTTTATTCTTTAACGAAATTGATTTCTTCGGTTTCATAGGCGTTCAATCGATAGATCGATGGATCGATCTGCCAAATTTCCCCGAGGAAATTTCTGCTACCTCCCTAGGCACACATACATACATATAATAATAACCATATACATCAAATTAATGATGTGTTACTTACAGATGATTTATATATATTAGCTCATCGATCTCTCCTGATGCAGGCAAAGGGATCCACC-ACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCA-TT-ATATATATTCATT-TGGAATGATTACTAATG-CTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATC-AAATTGTCGTCTCGTCTTTTCGATCA-AAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATG-AATGCCTGA-AAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAA-TTTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACATGTTGCTTGGCTAAAAAAAAAATTACGATTGCTTGTGGTTAGTGTTTTTTTAAATAGCAATTGTTGTATTGTTTTCGAGTTAAAAAAAAAA]
[+] EMBL AK069371 [CCACGTGATTTCCTCTCCCAAATCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGTCAGTGATTCTAACCCTTCACTTCCTACCTACTGCTCCGTCCAAAAAAAAAAGAAAAAAAACTCTAATTATGAATCTAGACACGTATATGTCTAGATTCGTAGTTAGAATTGGATTTTTTTTTTTTGGACGGAGAGGTAAACAGCTAGTAGTATCTCAATCTGCTAGCTCTATCCGCCGCCTCGCTCGATCTCGGCGTTCGCGCGCACCGCACGCCGGCCTGAATGGCTCCAAGGGAAGGGAACTCCTCTTCTCTCTCTCTCTCTGAAAATATACTTAGATTATAATATAATTCACTTTGCAGGTTTTTATTTTTTCGAACCGCTTTTATTTTATTTTATTCTTTAACGAAATTGATTTCTTCGGTTTCATAGGCGTTCAATCGATAGATCGATGGATCGATCTGCCAAATTTCCCCGAGGAAATTTCTGCTACCTCCCTAGGCACACATACATACATATAATAATAACCATATACATCAAATTAATGATGTGTTACTTACAGATGATTTATATATATTAGCTCATCGATCTCTCCTGATGCAGGCAAAGGGATCCACC ACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCA TT ATATATATTCATT TGGAATGATTACTAATG CTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATC AAATTGTCGTCTCGTCTTTTCGATCA AAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATG AATGCCTGA AAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAA TTTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACA ]
[+] EMBL CB669089 [ ACCAACCGCCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGTCAGTGATTCTAACCCTTCACTTCCTACCTACTGCTCCGTCCAAAAAAAAAAGAAAAAAAACTCTAATTATGAATCTAGACACGTATATGTCTAGATTCGTAGTTAGAATTGGA TTTTTTTTTTTGGACGGAGAGGTAAACAGCTAGTAGTATCTCAATCTGCTAGCTCTATCCGCCGCCTCGCTCGATCTCGGCGTTCGCGCGCACCGCACGCCGGCCTGAATGGCTCCAAGGGAAGGGAACTCCTCTTCTCTCTCTCTCTCTGAAAATATACTTAGATTATAATATAATTCACTTTGCAGGTTT ]
[+] EMBL CA754190 [ ACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGTCAGTGATTCTAACCCTTCACTTCCTACCTACTGCTCCGTCCAAAAAAAA ]
[-] EMBL CB669090 [ GCTCTATCCGCCGCCTCGCTCGATCTCGGCGTTCGCGCGCACCGCACGCCGGCCTGAATGGCTCCAAGGGAAGGGAACTCCTCTTCTCTCTCTCTCTCTGAAAATATACTTAGATTATAATATAATTCACTTTGCAGGTTTTTATTTTTTCGAACCGCTTTTATTTTATTTTATTCTTTAACGAAATTGATTTCTTCGGTTTCATAGGCGTTCAATCGATAGATCGATGGATCGATCTGCCAAATTTCCCCGAGGAAATTTCTGCTACCTCCCTAGGCACACATACATACATATAATAATAACCATATACATCAAATTAATGATGTGTTACTTACAGATGATTTATATATATTAGCTCATCGATCTCTCCTGATGCAGGCAAAGGGATCCACC ACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCA TT ATATATATTCATT TGGAATGATTACTAATG CTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATC AAATTGTCGTCTCGTCTTTTCGATCA AAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATG AATGCCTGA AAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAA TTTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATAAAGGACAGTCCATGTTGCTTGGCT ]
[+] EMBL CF196349 [ CTCTCTCTCTGAAAATATACTTAGATTATAATATAATTCACTTTGCAGGTTTTTATTTTTTCGAACCGCTTTTATTTTATTTTATTCTTTAACGAAATTGATTTCTTCGGTTTCATAGGCGTTCAATCGATAGATCGATGGATCGATCTGCCAAATTTCCCCGAGGAAATTTCTGCTACCTCCCTAGGCACACATACATACATATAATAATAACCATATACATCAAATTAATGATGTGTTACTTACAGATGATTTATATATATTAGCTCATCGATCTCTCCTGATGCAGGCAAAGGGATCCACC ACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCA TT ATATATATTCATT TGGAATGATTACTAATG CTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATC AAATTGTCGTCTCGTCTTNNNNNTCA AAGTGGANNNNCNGNTGGATCANNNNTNAATTCNNNNGTCTGNNNNNNNNNG NATGCCTGA AAnnnc ]
[+] EMBL BI811721 [ taGCG TCAATCGATAGATCGATGGATCGATCTGCC AATTTCCCCGAGG AATTTCTGCTACCTCCCTAGGCACACATACATACATAT ATAATAACCATATACATC AATTAATGATGTGTTACTTACAGATGATTTATATATATTAGCTCATCGATCTCTCCTGAT CA GCAAAGGGATCCACC ACAA CGGCGC C GCAACC GCCGTTCGATCGATAACCACTT ATATATATTCATT TGGAATGATTACTAATG CTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACCATCAAAATTGTCGTCTCGTCTTTTCGATCACAAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATG AATGCCTGA AAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAA TTTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACATGTTGCTTGGCTAAAAAAAAAA ]
[+] EMBL BI805865 [ CCACCTACAA CGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCA TTGATATATATTCATTGTGGAATGATTACTAATGTCTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACCATC AAATTGTCGTCTCGTCTTTTCGATCA AAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGTAATGCCTGATAAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAANCNTGGATGTTGTGATTATCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACATGTTGCTTGGCTATTTGTGGATTTACGATTGCTTGTGGTTAGTGTTTTTTTAAATAGCAATTGTTGTATTGTTTTCGAGTTAAAAAAAAAA]
consensusID : consensus_11352#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence
[TCTCCCCTTTCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCCCCTAATAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGCAAAGGGATCCACCACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCATTATATATATTCATTTGGAATGATTACTAATGCTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATCAAATTGTCGTCTCGTCTTTTCGATCAAAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGAATGCCTGAAAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAATTTGGATGTTGTGA]
[+] EMBL CB650402 [TCTCCCCTTTCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTCGATCCTCCAATTTCCTCTCCCAAATCATCTCCCCTAATAATCAGTGTATTTTGTTGCTTATTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGATCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTTCGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCCGCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGTCGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGGCCAAACTCAACTCGGATCGAGATCCAGCAAAGGGATCCACCACAAGCGGCGCGCGGCAGCCGGCCGGTCGATCGATAACCATTATATATATTCATTTGGAATGATTACTAATGCTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTCTTCGTCAGGGAGAGACGGACAATCAAATTGTCGTCTCGTCTTTTCGATCAAAGTGGAGGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGAATGCCTGAAAAATCGAAAAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAATTTGGATGTTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11352#0 CCACGTGATTTCCTCTCCCAAATCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTC 60
consensus_11352#1 -------------TCTCCCCTTTCCACCAACCGTCCTCCGGTCTCTCCTGTTCTTCGCTC 47
****** **************************************
consensus_11352#0 GATCCTCCAATTTCCTCTCCCAAATCATCTCGAGTAGTAATCAGTGTATTTTGTTGCTTA 120
consensus_11352#1 GATCCTCCAATTTCCTCTCCCAAATCATCTCCCCTAATAATCAGTGTATTTTGTTGCTTA 107
******************************* ** ***********************
consensus_11352#0 TTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGA 180
consensus_11352#1 TTTCGATCGATCTCATCCCAACCTGTTCGATCGTCGCCTCCGCCGAGTTTTGCTGCTCGA 167
************************************************************
consensus_11352#0 TCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTT 240
consensus_11352#1 TCGGATCGGTCAAAGCAGCACACCGGCCCGGCAAGCCATGGAGCTGACGCTGCTGGTGTT 227
************************************************************
consensus_11352#0 CGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCC 300
consensus_11352#1 CGTCCTCGTCGCGGCCTTCTCCTTCGTGATCGGCACGGCCGTCACCACGGCGCCGGCGCC 287
************************************************************
consensus_11352#0 GCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGT 360
consensus_11352#1 GCCATGGCCAGCGGCGGCCTTCGCCGCCTACCTCTTCTGGGTCGTCGCCTCCGCCGCCGT 347
************************************************************
consensus_11352#0 CGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGG 420
consensus_11352#1 CGCCCTGTTCGTCCGCCGCCCCGCCGCGTGAACACACACACCCTCACCAACTCCGGCCGG 407
************************************************************
consensus_11352#0 CCAAACTCAACTCGGATCGAGATCCAGTCAGTGATTCTAACCCTT-CACTTCCTACCTAC 479
consensus_11352#1 CCAAACTCAACTCGGATCGAGATCCAGCAAAGGGATCCACCACAAGCGGCGCGCGGCAGC 467
*************************** * * ** * * * * * * *
consensus_11352#0 TGCTCCGTCCAAAAAAAAAAGAAAAAAAACTCTAATTATGAATCTAGACACGTATATGTC 539
consensus_11352#1 CGGCCGGTC-GATCGATAACCATTATATATATTCATTTGGAA--TGATTACTAATGC-TG 523
* * *** * * ** * * * * * *** *** * ** ** *
consensus_11352#0 TAGATTCGTAGTTAGAATTGGATTTTTTTTTTTTGGACGGAGAGGTAAACAGCTAGTAGT 599
consensus_11352#1 CAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAA----TATATTGCGAGTTCT 579
** * ** ** * * * ** * ** * * * ** * ** *** *
consensus_11352#0 ATCTCAATCTGCTAGCTCTATCCGCCGCCTCGCTCGATCTCGGCGTTCGCGCGCACCGCA 659
consensus_11352#1 TCGTCAGGGAGAGACGGACAATCAAATTGTCGTCTCGTCTT----TTCGATCAAAGTGGA 635
*** * * * * *** *** **** * * * *
consensus_11352#0 CGCCGGCCTGAATGGCTCCAAGGGAAG---GGAACTCCTCTTCTCTCTCTCTCTCTGAAA 716
consensus_11352#1 ----GGTGCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGAATGCCTGAAA 691
** *** ** ** ** * ** ** * * * * ******
consensus_11352#0 ATATACTTAGATTATAATATAATTCACTTTGCAGGTTTTTATTTTTTCGAACCGCTTTTA 776
consensus_11352#1 AATCGAAAAGAGGA-AATATTTATTATCTTAGAATGTTATATGCATGTAAAT---TTGGA 747
* *** * ***** * * ** * ** *** * ** ** *
consensus_11352#0 TTTTATTTTATTCTTTAACGAAATTGATTTCTTCGGTTTCATAGGCGTTCAATCGATAGA 836
consensus_11352#1 TGTTGTGA---------------------------------------------------- 755
* ** *
consensus_11352#0 TCGATGGATCGATCTGCCAAATTTCCCCGAGGAAATTTCTGCTACCTCCCTAGGCACACA 896
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TACATACATATAATAATAACCATATACATCAAATTAATGATGTGTTACTTACAGATGATT 956
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TATATATATTAGCTCATCGATCTCTCCTGATGCAGGCAAAGGGATCCACCACAAGCGGCG 1016
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 CGCGGCAGCCGGCCGGTCGATCGATAACCATTATATATATTCATTTGGAATGATTACTAA 1076
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TGCTGCAGGTCAATATATATCAAGATGCTGTGTTATATTTGGTGAATATATTGCGAGTTC 1136
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TTCGTCAGGGAGAGACGGACAATCAAATTGTCGTCTCGTCTTTTCGATCAAAGTGGAGGT 1196
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 GCTGGTGGATCATAGTTAAATTCGCAAGTCTGCGCATTCATGAATGCCTGAAAAATCGAA 1256
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 AAGAGGAAATATTTATTATCTTAGAATGTTATATGCATGTAAATTTGGATGTTGTGATTA 1316
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TCTCGGCATCTTATAAGAGTGGATAAAAAATATTTATATACAGTACAGTACATGTTGCTT 1376
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 GGCTAAAAAAAAAATTACGATTGCTTGTGGTTAGTGTTTTTTTAAATAGCAATTGTTGTA 1436
consensus_11352#1 ------------------------------------------------------------
consensus_11352#0 TTGTTTTCGAGTTAAAAAAAAAA 1459
consensus_11352#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||