cluster # 11361

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Oryza sativa
cluster # 11361 cluster # 11361 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11361#0 length = 733 sequences # 7

consensus_11361#1 length = 168 sequences # 1

consensusID : consensus_11361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 733
fasta sequence

                              [GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA-ATC-AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA-GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC-AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTATTAAAAA]

[+] EMBL CF290999             [GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATC AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAG                                                                                                         ]
[+] EMBL OSD038               [     cttctcacACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATCAAGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGG CTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGGTCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAA                                                                 ]
[+] EMBL AK063743             [                    TCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATC AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTAT      ]
[+] EMBL CF281339             [                    TCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCTTTTATAT  AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGTTTTTTCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTANGATTAGTAGTAGTAGGATTTTAGTCTAGGCGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGCATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAAAAAAAAAAAAaaaaaa                                                          ]
[-] EMBL AU225522             [                                                                                                                                                                                                                                                                                                                                                                         ccgctACCCATACCTGACCTCACTGCACTTCTAACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCagcggc                                                        ]
[-] EMBL CF281338             [                                                                                                                                                                                                                                                                                                                                                                                                             TCATTCATCCGAGTGCATACTAGTACTATTATATACTAAAGGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGCGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGCATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTCCAAAAAAAAAAAA                                                                ]
[+] EMBL AU089666             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTATTAAAAA]




>consensus_11361#0
GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCC
GCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGT
ACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGAATCAGG
GAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTC
CTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGAAGGCCATCAGCCTGCGTCTCGACGAG
CTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAG
CCCACCCATACCTGACCTCACTGCACTTCAACTTCATTCATCCGAGTGCATACTAGTACT
ATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAA
TTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCG
CCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCA
CGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAAT
GAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTA
TTACTATTAAAAA

consensusID : consensus_11361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 168
fasta sequence

                              [CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF315587             [CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_11361#1
CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCAC
GTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11361#0      GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCC 60
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      GCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGT 120
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      ACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGAATCAGG 180
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      GAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTC 240
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      CTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGAAGGCCATCAGCCTGCGTCTCGACGAG 300
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      CTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAG 360
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      CCCACCCATACCTGACCTCACTGCACTTCAACTTCATTCATCCGAGTGCATACTAGTACT 420
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      ATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAA 480
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      TTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCG 540
consensus_11361#1      ------------------------------------------------------------
                                                                                   

consensus_11361#0      CCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCA 600
consensus_11361#1      -CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCA 59
                        ***********************************************************

consensus_11361#0      CGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAAT 660
consensus_11361#1      CGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 119
                       ************* *************  *   *     ****  *   *     * ** 

consensus_11361#0      GAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTA 720
consensus_11361#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------AAAAAAAAAA--- 168
                        **  ****    **       * *   *   *  * *         **  * ****   

consensus_11361#0      TTACTATTAAAAA 733
consensus_11361#1      -------------