These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11361#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 733 fasta sequence [GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA-ATC-AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA-GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC-AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTATTAAAAA] [+] EMBL CF290999 [GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATC AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAG ] [+] EMBL OSD038 [ cttctcacACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATCAAGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGG CTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGGTCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAA ] [+] EMBL AK063743 [ TCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGA ATC AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTAT ] [+] EMBL CF281339 [ TCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCCGCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGTACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCTTTTATAT AGGGAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGTTTTTTCCGGTGGCCTGCAGGAAGCTCCTCTTCGACCCAGCTCAGCAGCAGGGGAA GGGGAAGGCCATCAGCCTGCGTCTCGACGAGCTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAGCCCACCCATACCTGACCTCACTGCACTTC AACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTANGATTAGTAGTAGTAGGATTTTAGTCTAGGCGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGCATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAAAAAAAAAAAAaaaaaa ] [-] EMBL AU225522 [ ccgctACCCATACCTGACCTCACTGCACTTCTAACTTCATTCATCCGAGTGCATACTAGTACTATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCagcggc ] [-] EMBL CF281338 [ TCATTCATCCGAGTGCATACTAGTACTATTATATACTAAAGGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAATTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGCGTAATCGTTACCGCCACGAGCTGCAGTGTTGTATTTGTATGCATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTCCAAAAAAAAAAAA ] [+] EMBL AU089666 [ CCGCCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAATGAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTATTACTATTAAAAA] consensusID : consensus_11361#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 168 fasta sequence [CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF315587 [CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCACGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11361#0 GAAGGAGTAGAAAACTCCAATCCATCCTCCCTCTCCACCCTCCAGGCTCCAGCTATGTCC 60 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 GCCTCGCCCGAGTTCTACAGGCCCTCGCCGCCGGCCTTCTCGCCCTCCTGCGCCGCCGGT 120 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 ACCAGTACCACGGAGGTCGACGAGTACAGCTGCTGCCGGACGCCAACGCCGGGAATCAGG 180 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 GAGCCAGCCACCTGCCCGCCGGCGCCCCGGAAGCCCAGGCCGGTGGCCTGCAGGAAGCTC 240 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 CTCTTCGACCCAGCTCAGCAGCAGGGGAAGGGGAAGGCCATCAGCCTGCGTCTCGACGAG 300 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 CTGGAGCGCCTCTTCCGCCCCATCACCAATAATGCCAACCTTCACCTCCAAACCAACAAG 360 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 CCCACCCATACCTGACCTCACTGCACTTCAACTTCATTCATCCGAGTGCATACTAGTACT 420 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 ATTATATACTAAATGCTTCTTCTTCTTCTTCTTTGGATAATCAATCTCTTTTCGCTTTAA 480 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 TTTCCTCTTACTACTAGGATTAGTAGTAGTAGGATTTTAGTCTAGGAGTAATCGTTACCG 540 consensus_11361#1 ------------------------------------------------------------ consensus_11361#0 CCACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCA 600 consensus_11361#1 -CACGAGCTGCAGTGTTGTATTTGTATGTATGTATGTATCAGCAATCAAGCCAAGCTTCA 59 *********************************************************** consensus_11361#0 CGTAAGATCGAGCAGTGATTTCAGTCAGTATGTATGCTCAAAATGATTTAGTTGTACAAT 660 consensus_11361#1 CGTAAGATCGAGCGGTGATTTCAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 119 ************* ************* * * **** * * * ** consensus_11361#0 GAATCAAAAGCTTAATTTGCTTACACTTATGTAGTATACTCCTGTCTAATGATAAAATTA 720 consensus_11361#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------AAAAAAAAAA--- 168 ** **** ** * * * * * * ** * **** consensus_11361#0 TTACTATTAAAAA 733 consensus_11361#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||