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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 634 fasta sequence
[TTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCG-TGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATGGTCTTGTGATGAACTGCCCAGTGGGATACTGCCCTTCTTATGTGTGAAAGATGCATCATGGCCTGAAATCTTCTCGCGTGTAAAATCAGTACAGCAGTTACCTGAAAACTGTTTTGCAAATGCAGTGGATCACTATCTTGTTCTTCTTTAAAAAAAAAA]
[+] EMBL AK069707 [TTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCG TGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATGGTCTTGTGATGAACTGCCCAGTGGGATACTGCCCTTCTTATGTGTGAAAGATGCATCATGGCCTGAAATCTTCTCGCGTGTAAAA ]
[+] EMBL AK104923 [ TCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCG TGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATGGTCTTGTGATGAACTGCCCAGTGGGATACTGCCCTTCTTATGTGTGAAAGATGCATCATGGCCTGAAATCT ]
[+] EMBL AU091729 [ ATGCCCAGCNTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCG TGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATGGTCTTGTGATGAACTGCCCAGTGGGATACTGCCCTTCTTATGTGTGAAAGATGCATCATGGCCTGAAATCTTCTCGCGTGTAAAATCAGTACAGCAGTTACCTGAAAACTGTTTTGCAAATGCAGTGGATCACTATCTTGTTCTTCTTTAAAAAAAAAA]
[+] EMBL AU091728 [ GCTTAATTAACCGTTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATGGTCTTGTGATGAACTGCCCAGTGGGATACTGCCCTTCTTATGTGTGAAAGATGCATCATGGCCTGAAATCTTCTCGCGTGTAAAATCAGTACAGCAGTTACCTGAAAACTGTTTTGCAAATGCAGTGGATCACTATCTTGTTCTTCTTTAAAAAAAA ]
consensusID : consensus_11362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 588 fasta sequence
[CTTGTCATCCTCGGTTGGCCTCCTTCCCCCAATCGTCTCCAACTCTCCATCGCCCATAGCTTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCGTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTACACGGATTAAGGTGGCCAAAATGCCTAACCTGAGTTTTGGATATTCACATGCATGAA]
[+] EMBL CF278352 [CTTGTCATCCTCGGTTGGCCTCCTTCCCCCAATCGTCTCCAACTCTCCATCGCCCATAGCTTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCGTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTACACGGATTAAGGTGGCCAAAATGCCTAACCTGAGTTTTGGATATTCACATGCATGAA]
[+] EMBL CF301881 [ CTCTCCATCGCCCATAGCTTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGCTGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCTGATGCCCAGCCTACGCCGTGCTCTCCCAAGGACACCGCTGCTGCTTAGGCTTAATTAACCGTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTCGCTAAATGCTGAGACTGTGATCAGGA ]
consensusID : consensus_11362#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence
[TAGATCTCTCCCCTTCTCTTTGGCGTAAAAGGAAAAACACCCGTCTCGTCGTCTCCTCAGCTCCGTGCGCCATCTCGCGTCGCGGCTGAACAGGGGAGGGGAGGGGATCCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCNATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCT-NCAACCTG-TCGCCTTGA-TGCCCAGCCTACGGCCGTGCTTCTTCCAAGGACAACGCTGCTTGTTTAGGCTTAAATTAACCGTGTTACCATGTTAATGCTTAAA]
[+] EMBL AU065940 [TAGATCTCTCCCCTTCTCTTTGGCGTAAAAGGAAAAACACCCGTCTCGTCGTCTCCTCAGCTCCGTGCGCCATCTCGCGTCGCGGCTGAACAGGGGAGGGGAGGGGATCCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCNATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCT NCAACCTG TCGCCTTGA TGCCCAGCCTACGGCCGTGCTTCTTCCAAGGACAACGCTGCTTGTTTAGGCTTAAATTAACCGTGTTACCATGTTAATGCTTAAA]
[+] EMBL OSS15666A [TAGATCTCTCCCCTTCTCTTTGGCGTAAAAGGAAAAACACCCGTCTCGTCGTCTCCTCAGCTCCGTGCGCCATCTCGCGTCGCGGCTGAACAGGGGAGGGGAGGGGATCCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAGTTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCAGGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGACGATGACGGGGCAGANAAGTACAGATCAAAGCTCATCTCCATCTCCCAACCTGTTCGGCTNAATTGCCCAGCC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11362#0 ------------------------------------------------------------
consensus_11362#1 CTTGTCATCCTCGGTTGGCCTCCTTCCCCCAATCGTCTCCAACTCTCCATCGCCCATAGC 60
consensus_11362#2 ------------------------TAGATCTCTCCCCTTCTCTTTGGCGTAAAAGGAAAA 36
consensus_11362#0 TTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGC 60
consensus_11362#1 TTTCTCTCATCTTCGGCCCTGCAGGCTGCAGCCTCATCGCTCGTCCCTGCAGCCTCCCGC 120
consensus_11362#2 ACACCCGTCTCGTCGTCTCCTCAGCTCCGTGCGCCATCTCGCGTC---GCGGCTGAACAG 93
* * ** *** * * *** ** **** * **** ** ** *
consensus_11362#0 TGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAG 120
consensus_11362#1 TGTCCTGCCAGATTATCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAG 180
consensus_11362#2 GGGAGGGGAGGGGATCCTGCCTTTGTTTGTTTGATGGCCTCACCTGCATCACCGAGAGAG 153
* * * ********************************************
consensus_11362#0 TTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCA 180
consensus_11362#1 TTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCGATCTCCCGGTCTGTTCCAGCGGCA 240
consensus_11362#2 TTCACTCAGGAAGCTGCCCGTCAGTCTCTGATTGCNATCTCCCGGTCTGTTCCAGCGGCA 213
*********************************** ************************
consensus_11362#0 GGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGAC 240
consensus_11362#1 GGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGAC 300
consensus_11362#2 GGAGAAGCCGTCAACATCAAGTCACCGAGCGGCGCCATGGTGAATGGCCACCACCACGAC 273
************************************************************
consensus_11362#0 GATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCT-GA 299
consensus_11362#1 GATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTCCAACCTGTCGCCT-GA 359
consensus_11362#2 GATGACGGGGCAGAGAAGTACAGATCAAAGCTCATCTCCATCTNCAACCTGTCGCCTTGA 333
******************************************* ************* **
consensus_11362#0 TGCCCAGCCTACG-CCGTGCT-CTCCCAAGGACACCGCTGCT-GCTTAGGCTTAA-TTAA 355
consensus_11362#1 TGCCCAGCCTACG-CCGTGCT-CTCCCAAGGACACCGCTGCT-GCTTAGGCTTAA-TTAA 415
consensus_11362#2 TGCCCAGCCTACGGCCGTGCTTCTTCCAAGGACAACGCTGCTTGTTTAGGCTTAAATTAA 393
************* ******* ** ********* ******* * ********** ****
consensus_11362#0 CCGTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTC 415
consensus_11362#1 CCGTGTGACCATGTTACTGCTTACACTTCCAAGTGTGGATATCGTGTCCCAGCGTGTGTC 475
consensus_11362#2 CCGTGTTACCATGTTAATGCTTAAA----------------------------------- 418
****** ********* ****** *
consensus_11362#0 GCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTATATG 475
consensus_11362#1 GCTAAATGCTGAGACTGTGATCAGGACCCTTGGCCTTAATAACTGCCATGACTGTACACG 535
consensus_11362#2 ------------------------------------------------------------
consensus_11362#0 GTCTT--GTGAT-GAACTGCCCAG--TGGGATACTGCCCTTCTTATGTGTGAAAGATGCA 530
consensus_11362#1 GATTAAGGTGGCCAAAATGCCTAACCTGAGTTTTGGATATTCACATGCATGAA------- 588
consensus_11362#2 ------------------------------------------------------------
consensus_11362#0 TCATGGCCTGAAATCTTCTCGCGTGTAAAATCAGTACAGCAGTTACCTGAAAACTGTTTT 590
consensus_11362#1 ------------------------------------------------------------
consensus_11362#2 ------------------------------------------------------------
consensus_11362#0 GCAAATGCAGTGGATCACTATCTTGTTCTTCTTTAAAAAAAAAA 634
consensus_11362#1 --------------------------------------------
consensus_11362#2 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||