cluster # 11363

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Oryza sativa
cluster # 11363 cluster # 11363 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11363#0 length = 834 sequences # 7

consensus_11363#1 length = 213 sequences # 1

consensusID : consensus_11363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 834
fasta sequence

                              [AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC-TTCCAAAAAGAACTTATC-AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC-AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAATACACATCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCTAGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA]

[+] EMBL OSC25191             [AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGNCGCTCGTCCCCCCGCNGNCGACGNCGCAGCCGTGNACGGAGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU101607             [   TAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGAAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCACAAGAATTTCAGTGTAACGAAAAACCCATAGCTCTT TG ACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGT                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU093099             [      GGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTTCAAAAAGAACTTATCAAGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK121299             [                      GGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTACAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGG                                                                                                                                                                                                 ]
[+] EMBL AU161048             [                                     GAAAACCCTAGCGCGGGCGGGCTCCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGCCGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGCCGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGG CTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTACTTTCAAAAAAGAACTTATC AGCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AU161049             [                                                                                                                                           CCAGCCGCTGGTCCCCCCGCNGCAGCCGCAGCAGCCGCGGCCGAAGACGACGGTGAAGG CTACGAGGCGCAGNCGGTGGCGAGGCTNAGCTCGCTCCCAGGAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAA                                                                                                                                                                                        ]
[+] EMBL AU101608             [                                                                                                                                                                                                                                           CCCAGAANAGATCTCCTTCCCNTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAG CGGAAAGGATCCTGTTGCTAATGAACCCCTGGAGCTAC TTCCAAAAAGAACTTATC AGCCCAGTACCATCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGGTGATTGCGCGCAGGATTGCCAAGGGCAGGCAC AGAATTTCAGTGTAACGAAAAACCCATAGCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCACCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCTAGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA]




>consensus_11363#0
AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCT
CCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGC
CGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGC
CGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAG
GAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGG
ATCCTGTTGCTAATGAACCCCTGGAGCTACTTCCAAAAAGAACTTATCAGCCCAGTACCA
TCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGG
TGATTGCGCGCAGGATTGCCAAGGGCAGGCACAGAATTTCAGTGTAACGAAAAACCCATA
GCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCA
CCCTTTACCGCCCTCACTGTGGAGGGACAGCTGCAGCAGAAGCAGTAGTGCCATGTACCG
AATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAATACACATCCA
ACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGCTTCT
TGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCTAGTA
GTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA

consensusID : consensus_11363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [GGCTTCCCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNCCCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA]

[+] EMBL BQ907995             [GGCTTCCCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNCCCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA]




>consensus_11363#1
GGCTTCCCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNCCCCGTCGATCCTT
GCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGTACCGAATTATCTT
TACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACATCCAACATCTGCA
CCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11363#0      AGCTAGGGTTTCTCAGGTCCTCGGCAATGTCGTCGGCGAAAACCCTAGCGCGGGCGGGCT 60
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      CCTCCCTCCTCGGCCGCCTCCTCGCGTCCCCGTCTCCCCTTCGCGCGGGGCTGCCTCCGC 120
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      CGTCGCTGCTCTCCAGGATCCAGCCGCTCGTCCCCCCGCCGCCGCCGCCGCAGCCGCGGC 180
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      CGGAGACGACGGTGGAGGCCTACGAGGCGCAGGCGGTGGCGAGGCTGAGCTCGCTCCCAG 240
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      GAGAGATCTCCTTCCCCTGCGGCCTCCCCTCGCTCCGGTTCATCATCGAAGACGGAAAGG 300
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      ATCCTGTTGCTAATGAACCCCTGGAGCTACTTCCAAAAAGAACTTATCAGCCCAGTACCA 360
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      TCAAGCGGAAAAGAACCCATGGGTTTCTTACACGAAAATCAACCAAAGGTGGGCGTAAGG 420
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      TGATTGCGCGCAGGATTGCCAAGGGCAGGCACAGAATTTCAGTGTAACGAAAAACCCATA 480
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      GCTCTTCTGCACCTTCACATCATCCATTTCGTGAACATCTAAGAGCTCACAGTTTCTGCA 540
consensus_11363#1      ----------GGCTTC---CCACCCAACTGGTGTTTCGTTAGCACCCCGTGTGTACCGNC 47
                                   ****    ** ***  * ***      **  * * *     * * *  

consensus_11363#0      CCCTTTACCGCCCTCACTGTGGAGGGA-CAGCTG---CAGCAGAAGCAGTAGTGCCATGT 596
consensus_11363#1      CCCGTCGATCCTTGCCTGGNAGGGAGAACAGCCGTGCCAGCAGAAGCAGTAGTGCCATGT 107
                       *** *     *   *   *  * * ** **** *   ***********************

consensus_11363#0      ACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAAAAAATACACA 656
consensus_11363#1      ACCGAATTATCTTTACGAAATAAACTAGGCAATTGGACTGATTGGCCAAATTTTTACACA 167
                       **************************************************    ******

consensus_11363#0      TCCAACATCTGCACAATCGCAGCTGGCAGGGTTCAACTTCAAACAGCCGTCTGTGTGCGC 716
consensus_11363#1      TCCAACATCTGCACCNTCGCAGCTGGCAGGGTTCAACTTTCAAAAA-------------- 213
                       **************  ***********************  ** *               

consensus_11363#0      TTCTTGGCTCTCCTAACCACTGCCTTCTGTCCTTGAATCCATTTCAACCATTCTTTTGCT 776
consensus_11363#1      ------------------------------------------------------------
                                                                                   

consensus_11363#0      AGTAGTTTATTCGTGAACACTAATCATGATCTCTCATCTGGACGCCAAAAAAAAAAAA 834
consensus_11363#1      ----------------------------------------------------------