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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11364#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1177 fasta sequence
[AGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCGGTGGTGGCCGGCGCTGCCGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCGGCGACGCGGCTCCCGTGTGCACGCGGCCGTCCGCGGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCCGCTCGCCGCTGCGCCGCCCGCTCGGCGTCACCGAGGGAGATGATGCTATCTTAGCGAGGGCCGTTAATCTACTTCATGCAAACAAGGAGGATTTCGCTGCTGTGCTCTTCTATGCTTCCTGGTGCCCATTTTCACAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAATTGAAG-AATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTCT-AAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACTGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACC-TTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTACCGTCCATTTCGTTTTCTTGGAGGTAATAAAGTATGTTTCAGACAA-GTGTACTTTGACACTGCAAAATGATCATAAAATGAAAAGTGATTTTACATTAAAAAAAAAAAGA]
[+] EMBL CB663433 [AGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCGGTGGTGGCCGGCGCTGCCGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCGGCGACGCGGCTCCCGTGTGCACGCGGCCGTCCGCGGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCCGCTCGCCGCTGCGCCGCCCGCTCGGCGTCACCGAGGGAGATGATGCTATCTTAGCGAGGGCCGTTAATCTACTTCATGCAAACAAGGAGGATTTCGCTGCTGTGCTCTTCTATGCTTCCTGGTGCCCATTTTCACAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAATTGAAG AATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTCTAAAGC AGGGA ]
[+] EMBL CB677536 [ CGCCTCCCACGCGATGCGGTGGTGGCCGGCGCTGCCGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCGGCGACGCGGCTCCCGTGTGCACGCGGCCGTCCGCGGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCCGCTCGCCGCTGCGCCGCCCGCTCGGCGTCACCGAGGGAGATGATGCTATCTTAGCGAGGGCCGTTAATCTACTTCATGCAAACAAGGAGGATTTCGCTGCTGTGCTCTTCTATGCTTCCTGGTGCCCATTTTCACAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAATTGAAG AATCTACGGTCAGGTTAAGGACAAGATATCGGGATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTATCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCATAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAA ]
[+] EMBL AK059876 [ GGTGGTGGCCGGCGCTGCCGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCGGCGACGCGGCTCCCGTGTGCACGCGGCCGTCCGCGGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCCGCTCGCCGCTGCGCCGCCCGCTCGGCGTCACCGAGGGAGATGATGCTATCTTAGCGAGGGCCGTTAATCTACTTCATGCAAACAAGGAGGATTTCGCTGCTGTGCTCTTCTATGCTTCCTGGTGCCCATTTTCACAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAATTGAAG AATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGTGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTCT AAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACTGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACC TTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTACCGTCCATTTCGTTTTCTTGGAGGTAATAAAGTATGTTTCAGACAA GTGTACTTTGACACTGCAAAATGATCATAAAATGAAAAGTG ]
[+] EMBL CA767128 [ CAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAATTGAAG AATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACGCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCCTCT AAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACAGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGNGGTCGGCTGCGCAAA TACTGNAACTGCTTCGNTATGAAGCACACCTTTTTTTCCCCTTTCCTTACGTCTTCTCA ]
[-] EMBL CB663434 [ GTTGGCTTGCATATTTCCAACTATTCGTCATCTTGCAA TGAAGAAATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTCT AAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACTGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACC TTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTACCGTCCATTTCGTTTTCTTGGAGGTAATAAAGTAT ]
[-] EMBL CB677537 [ TATGGGATTCATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTCGAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGGATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCCTATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAGCAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTGTGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAATTTAACAGGGTATACCCGTTT AAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACTGCTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGAACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACC TTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTACCGTCCATTTCGTTTTCTTGGAGGTAATAAAGTATGTTTCAGACAAGGTGTCCTTTGACACTGCAAAATGATCATAAAATGAAAAGTGATTTTACATTAAAAAAAAAAAGA]
[+] EMBL CA755989 [ ACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCAGTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTATGAAGCACACC TTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTACCGTCCATTTCGTTTTCTTGGAGGTAATAAAGTATGTTTCAGACAA GTGTACTTTGACACTGCAAAAaaaaaaa ]
consensusID : consensus_11364#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 234 fasta sequence
[CGCATCCCGCCGCCGCCNCCGCCCCGCCTCCTCCTCCCATGCGCCGCCACGTAGGATCGCNCGATCAGATCTAGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCGTGGTGGCCGGCNCTGGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCNNNNNNTCCCGTNTGCACGCGGCCGTCCGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCGTCGCNGCTGNC]
[+] EMBL D42679 [CGCATCCCGCCGCCGCCNCCGCCCCGCCTCCTCCTCCCATGCGCCGCCACGTAGGATCGCNCGATCAGATCTAGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCGTGGTGGCCGGCNCTGGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCNNNNNNTCCCGTNTGCACGCGGCCGTCCGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCGTCGCNGCTGNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11364#0 ------------------------------------------------------------
consensus_11364#1 CGCATCCCGCCGCCGCCNCCGCCCCGCCTCCTCCTCCCATGCGCCGCCACGTAGGATCGC 60
consensus_11364#0 ------------AGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCGGTGGTGGC 48
consensus_11364#1 NCGATCAGATCTAGGGTCGAGCACTCCACTCTCCCGCCTCCCACGCGATGCG-TGGTGGC 119
**************************************** *******
consensus_11364#0 CGGCGCTGCCGCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCGGCGACGCGGCTCCCG 108
consensus_11364#1 CGGCNCTG--GCTGCTCCTCCTCGCCGTCGCCGTCGCCGGTGCCNNN-----NNNTCCCG 172
**** *** ********************************** *****
consensus_11364#0 TGTGCACGCGGCCGTCCGCGGCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCCGCTCGC 168
consensus_11364#1 TNTGCACGCGGCCGTCC---GCTGAGGCGATCGTGGGATCCCCCGAGGCGTGCG--TCGC 227
* *************** ********************************* ****
consensus_11364#0 CGCTGCGCCGCCCGCTCGGCGTCACCGAGGGAGATGATGCTATCTTAGCGAGGGCCGTTA 228
consensus_11364#1 NGCTGNC----------------------------------------------------- 234
****
consensus_11364#0 ATCTACTTCATGCAAACAAGGAGGATTTCGCTGCTGTGCTCTTCTATGCTTCCTGGTGCC 288
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 CATTTTCACAAGAATGCAGACTACGCTTTGAGAAGTTGGCTTGCATATTTCCAACTATTC 348
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 GTCATCTTGCAATTGAAGAATCTACGGTCAGGTTAAGGACAAGATATCGGTATGGGATTC 408
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 ATGGATACCCAACGCTGTTTCTCATAAACTCAACAGTGCGAGTGCGGTATCATGGGCCTC 468
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 GAACTGTCAAATCCTTAGCTGCCTTCTATAATGATGTTTCAGGTATTAATCCATCAATGG 528
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 ATCCAGCCGTTGGAGATGATAACATTGAACCTAAAAGGGATTGTGAGCAGGAAAAGTGCC 588
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 TATTCTGGTCGGCGCGAACACCAGAGAATATACTTCAACCAGATACTTATTTAACATTAG 648
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 CAGCTTCTTTTGTGATCCTTCGACTGCTCTATCTTTTTTATCCGAAGATCACTGCCTTTG 708
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 TGAAGCGGACATGGAGTAGGCGTACTCTCTTCACCTGCCTTGAGCAAGGAAAACATAAAT 768
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 TTAACAGGGTATACCCGTCTAAGCAAGGGAATTTGCATGATGGAGCAAGGCATGCTACTG 828
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 CTTGGGCTTCCAAATCGTTAGCATCTGTTTCAATCGGAGAGCCAAGCACCAGTTGATTGA 888
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 ACAACAATACATGAAGAACACGATTTGTCAACTGGGACATGTAGTAGATTGGAGTAATCA 948
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 GTAACTGAACAGACCATTTGCTGTGGTCGGCTGCGCAAATTACTGTAACTGCTTCGTTAT 1008
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 GAAGCACACCTTTTTTCCCCTTTCCTTACATCTTCTCATAGCTACTCTTATAATAGTTAC 1068
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 CGTCCATTTCGTTTTCTTGGAGGTAATAAAGTATGTTTCAGACAAGTGTACTTTGACACT 1128
consensus_11364#1 ------------------------------------------------------------
consensus_11364#0 GCAAAATGATCATAAAATGAAAAGTGATTTTACATTAAAAAAAAAAAGA 1177
consensus_11364#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||