These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 779 fasta sequence [GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC-TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC-TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC-AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT] [+] EMBL AK121090 [GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAtatctt ] [+] EMBL C98407 [ AAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACC ] [+] EMBL C73439 [ AGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCANCACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTTCAA ] [+] EMBL AU165700 [ GAANCAANCAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTAAA AAAAA ] [+] EMBL AU101057 [ cnTTATCCTCCTTTCCNGCTCGCCGCAGCA TGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGG ATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TC AGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAG ATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATA AAAAAAAAAA ] [-] EMBL AU182550 [ GTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT] [-] EMBL AU183797 [ GTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTTAAAAAAAAAAAAAANAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA ] consensusID : consensus_11372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [TGNTNGNNGCCNTCCCTCTGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATGTCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATTTCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACTGAGTACTTA] [+] EMBL CB096746 [TGNTNGNNGCCNTCCCTCTGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATGTCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATTTCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACTGAGTACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11372#0 GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGG 60 consensus_11372#1 ------------TGNTNGNNGCCNTCCCTCT-GATTACTCCAGCTAACTAGCTACCTTGG 47 * * * * **************************** consensus_11372#0 CAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTG 120 consensus_11372#1 CAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTG 107 ************************************************************ consensus_11372#0 GCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGG 180 consensus_11372#1 GCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGG 167 ****************************** *** ****************** * **** consensus_11372#0 AACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACT 240 consensus_11372#1 AACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACT 227 ************************************************************ consensus_11372#0 GGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCA 300 consensus_11372#1 GGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCA 287 ************************************************************ consensus_11372#0 AGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATG 360 consensus_11372#1 AGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATG 347 *************************** ********************** ********* consensus_11372#0 TCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAA 420 consensus_11372#1 TCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAA 407 ********************* ************************************** consensus_11372#0 CATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTC 480 consensus_11372#1 CATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTC 467 ******* **************************************************** consensus_11372#0 TATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGTTGTCATT 540 consensus_11372#1 TATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATT 527 **************************************************** ** **** consensus_11372#0 TCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCC-TTTGTTTTTAAACGGACT 599 consensus_11372#1 TCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACT 587 ******* ************************** **** * **** ************* consensus_11372#0 GAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAA 659 consensus_11372#1 GAGTACTTA--------------------------------------------------- 596 ********* consensus_11372#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 719 consensus_11372#1 ------------------------------------------------------------ consensus_11372#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT 779 consensus_11372#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||