cluster # 11372

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Oryza sativa
cluster # 11372 cluster # 11372 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11372#0 length = 779 sequences # 7

consensus_11372#1 length = 596 sequences # 1

consensusID : consensus_11372#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 779
fasta sequence

                              [GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC-TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC-TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC-AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT]

[+] EMBL AK121090             [GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAtatctt                                                                                                                                        ]
[+] EMBL C98407               [                   AAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACC                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL C73439               [                    AGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCANCACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU165700             [                     GAANCAANCAAGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCC TTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TCAAGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTAAA  AAAAA                                                                                                                                          ]
[+] EMBL AU101057             [                                                                     cnTTATCCTCCTTTCCNGCTCGCCGCAGCA TGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGG ATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCAC TC AGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAG ATGGCGGGTACCGCGTCGTCGACGATGTCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATA  AAAAAAAAAA                                                                                                                                     ]
[-] EMBL AU182550             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT]
[-] EMBL AU183797             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCC AAAAAATATTTTTCTGTTGTCATTTCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTGAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTTAAAAAAAAAAAAAANAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAA                                                                                               ]




>consensus_11372#0
GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGG
CAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTG
GCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGG
AACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACT
GGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCA
AGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATG
TCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAA
CATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTC
TATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGTTGTCATT
TCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCCTTTGTTTTTAAACGGACTG
AGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT

consensusID : consensus_11372#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 596
fasta sequence

                              [TGNTNGNNGCCNTCCCTCTGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATGTCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATTTCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACTGAGTACTTA]

[+] EMBL CB096746             [TGNTNGNNGCCNTCCCTCTGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGGAACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATGTCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATTTCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACTGAGTACTTA]




>consensus_11372#1
TGNTNGNNGCCNTCCCTCTGATTACTCCAGCTAACTAGCTACCTTGGCAATGGCCTCCTT
ATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTGGCTCATACGCCAC
CGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGGAACTCATCACCAA
CGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACTGGACGGCGCTGAA
GGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCAAGGGCCCCTTCTC
CGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATGTCATCCCCGAAAG
CTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAACATACACATATGC
TTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTCTATTTTAAGACAG
ATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATTTCATCGGNAATAG
TCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACTGAGTACTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11372#0      GATCCATCCCTCTATTATCAAGAAACAAACAAGATTACTCCAGCTAACTAGCTACCTTGG 60
consensus_11372#1      ------------TGNTNGNNGCCNTCCCTCT-GATTACTCCAGCTAACTAGCTACCTTGG 47
                                   *  *         *   *  ****************************

consensus_11372#0      CAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTG 120
consensus_11372#1      CAATGGCCTCCTTATCCTCCTTCCTGCTCGCCGCAGCAGTGGCGACACTGTTTGTCGTTG 107
                       ************************************************************

consensus_11372#0      GCTCATACGCCACCGAGCTTACCTTCAAGGTTAATGAGGGCTCTAGCGCAACTAGCCTGG 180
consensus_11372#1      GCTCATACGCCACCGAGCTTACCTTCAAGGNTAACGAGGGCTCTAGCGCAACTNGGCTGG 167
                       ****************************** *** ****************** * ****

consensus_11372#0      AACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACT 240
consensus_11372#1      AACTCATCACCAACGTCGCCATCTCTGAGGTGGAGATCAAGGAGAAGGGTGCCAGCGACT 227
                       ************************************************************

consensus_11372#0      GGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCA 300
consensus_11372#1      GGACGGCGCTGAAGGAATCATCGTCTAACACCTGGACGATCAAAAGCGGCTCGCCACTCA 287
                       ************************************************************

consensus_11372#0      AGGGCCCCTTCTCCGTCCGCTTCCTCGTCAAGAATGGCGGGTACCGCGTCGTCGACGATG 360
consensus_11372#1      AGGGCCCCTTCTCCGTCCGCTTCCTCGNCAAGAATGGCGGGTACCGCGTCATCGACGATG 347
                       *************************** ********************** *********

consensus_11372#0      TCATCCCCGAAAGCTTTACGGCCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAA 420
consensus_11372#1      TCATCCCCGAAAGCTTTACGGGCGGCTCTGTCTACAAGAGTGGTATCCAGCTCTAAGTAA 407
                       ********************* **************************************

consensus_11372#0      CATACACGTATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTC 480
consensus_11372#1      CATACACATATGCTTTTTTTTTGTTGAGTCGCATGAGAATTTTTAGCCTCTAAATAATTC 467
                       ******* ****************************************************

consensus_11372#0      TATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGTTGTCATT 540
consensus_11372#1      TATTTTAAGACAGATTGGGCCGCCTGCGAGCGAGCCAAAAAATATTTTTCTGGTGNCATT 527
                       **************************************************** ** ****

consensus_11372#0      TCATCGGTAATAGTCCATTGACAAAATGGATCTGTTTGTCC-TTTGTTTTTAAACGGACT 599
consensus_11372#1      TCATCGGNAATAGTCCATTGACAAAATGGATCTGGTTGTNCCTTTGGTTTTAAACGGACT 587
                       ******* ************************** **** * **** *************

consensus_11372#0      GAGTACTTAAATTGTTGTTAAGATTGTGTTTTATACTAAAAAAAAAAAAAAAAAAAAAAA 659
consensus_11372#1      GAGTACTTA--------------------------------------------------- 596
                       *********                                                   

consensus_11372#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 719
consensus_11372#1      ------------------------------------------------------------
                                                                                   

consensus_11372#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGNCCCCCNTTTTTTTT 779
consensus_11372#1      ------------------------------------------------------------