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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11373#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 727 fasta sequence
[TCACAGGATACAGATCCAGACTCCAGAGCCCCATAGAGAGA-GAAAATTCAGCTACTCCTAGATGAGACCCTGA-GTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTCCCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCACTGCCTGAAGAGCTTGGACATGGCCATGGAGATGGAGATGGATTCAGAGGCTCACAGCAGGATGCTGTGGG-AGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGAC-GCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGG-TGTCCCTTAC-TA-TAAC-TGCAGGA-TCA-TGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCCTCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCAAAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATAATATTATAAGGAAGCTTGGATCAAAAAAAAAAAAA]
[+] EMBL AU066022 [TCACAGGATACAGATCCAGACTCCAGAGCCCCATAGAGAGA GAAAATTCAGCTACTCCTAGATGAGACCCTGA GTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTCCCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCANCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCANTGNCTTAAGAGCTTGGACATGGCCATGGAGATGGAGATGGATTCAGAGGCTCACAGCAGGATG TGTGGG AGTCCAGNAGTAGTACGGGAAGGNGGTACATCAGCTACGAngtc ]
[+] EMBL OSC0131 [ CACAGGATACAGATCCAGACTCCAGAGNCCCATAGAG GANNGAAATTCAGCTACTTCTNGNTGAGNCCCTTANGTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTCCCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCACTGCCTGAAGAGNTTGGCCATGGCCATGGAGATGGAGNTGGATTCAGAGG TCACAGNAGGAT CTTTGGG AGTCCAGCAGC ]
[+] EMBL AK121173 [ AGAGAGA GAAAATTCAGCTACTCCTAGATGAGACCCTGA GTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTCCCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCACTGCCTGAAGAGCTTGGACATGGCCATGGAGATGGAGATGGATTCAGAGGCTCACAGCAGGATGCTGTGGG AGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGAC GCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGG TGTCCCTTAC TA TAAC TGCAGGA TCA TGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCCTCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCAAAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATAATATTATAAGGA ]
[+] EMBL OSC9801 [ ntngtGAGAGA GAAAATTCAGCTACTCCTAGATGAGACCCTGA GTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTCCCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCACTGNCTGAAGAGCTTGGACATGGCCATGGAGATGGAGATGGATTCAGAGGCTCACAGCAGGAT NTGTGGGNAGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGAC GCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGGTTTTCCTTTACTTATTAACTTGCAGGATTCATTGACCACCGNCA ]
[+] EMBL AU077920 [ CTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTGCTCCTCCTCCTCCTCCATGGAGGCCACTGCCTGAAGAGCTTGGACATGGCCATGGAGATGGAGATGGATTCAGAGGCTCACAGCAGGATGCTGTGGG AGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGAC GCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGG TGTCCCTTAC TA TAAC TGCAGGA TCA TGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAA ]
[+] EMBL AU096962 [ TCTTGCTCCTCCTCNTCCTCCATGGAGGCCACTGCCTGAAAAGCTTGGACATGGCCATGGAGAT GAGATGGATTCANAGGCTCACAGCAGGATGCTGTGGG AGTCCAGCAGCAGCAACGGCAGGAGGTACATCAGCTACGACGGCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGG TGTCCCTTAC TA TAAC TGCAGGA TCA TGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCCTCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCAAAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATAATATTATAAGGAAGCTTGGATCAAAAAAAAAAAAA]
consensusID : consensus_11373#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence
[CTACGACNCCTTGAGGACCGACGTGGTNCCGTGCTCGAGGCAGGGTGNCCCTTACTATAACTGCAGGATCATGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCCTCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCAAAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATAATATTATAAGGAAGCTTGGATCAGGGGAGGTGTGCTGCTTTGTGCTTGAAATTGTCGGCATTGATAAGATTTGATGCCATCAATTGACATGGAAATTGCTCCTTTTCTTCGTTTGTACAATTGTACTGGTATGTTAAAGTTGGTATACGCAATTGAGCACGTTGAATCTTTTCGGATGCTCATCGTTTCTTCAATTTTTTTTAATAGCTAGTCGTGTGATGAAACCTGGTTCGTTCTTGTTTAATAAAGATATTGCTTTGCAGTGTTTTCAAAAAAAAAA]
[+] EMBL AU077921 [CTACGACNCCTTGAGGACCGACGTGGTNCCGTGCTCGAGGCAGGGTGNCCCTTACTATAACTGCAGGATCATGACCACCGCCAACCCTTACACCCGGGGATGCGAGACCATCACCAGGTGCAGGGATGTGGATCCGTGATTACTACTGCACTGCCTGCTTGTTTTGCTGGATGATCTTGCCATGAGAGGAATTGCAGGAGTGGCTACCTGAGATGCAAATCTTGGTTTTTATTTTTTTTTTGTTTTTCTTTTACCCTCTCTTCTGTTCTTTCTTCTTCTTTATGTTCTGCATTTGCTGAATCATTGTAGGTGATTCATGGATGATTTACATGTTCAAAGATCTTATGAGTATGTATATGTAAGATCTGGTTGCAAGCTATAATATTATAAGGAAGCTTGGATCAGGGGAGGTGTGCTGCTTTGTGCTTGAAATTGTCGGCATTGATAAGATTTGATGCCATCAATTGACATGGAAATTGCTCCTTTTCTTCGTTTGTACAATTGTACTGGTATGTTAAAGTTGGTATACGCAATTGAGCACGTTGAATCTTTTCGGATGCTCATCGTTTCTTCAATTTTTTTTAATAGCTAGTCGTGTGATGAAACCTGGTTCGTTCTTGTTTAATAAAGATATTGCTTTGCAGTGTTTTCAAAAAAAAAA]
consensusID : consensus_11373#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[TGCTCGAGCAGGGTGTCACCTTACATAGTAACTCAAGGATCATGACCACACGCCAACCCTTACAACCCGGGGATGCAGAGACACAATCACCAGGTCAGGGATGTGGGATCCGTGATTACTACTGCACCTGCCTGGCTTGTTTTGCTGGGATGATCTTGCTATGAGAGGAATTCGCACGGAGTGGCTACCTGGAGATCCACAATCTTGGGTTTGTTAATTTTTTTTTGGTTGTTTCTTTGTACCCTGCTCTTGCTGGTTGCTGTTGCTGTGCTGTCTGTTATGGTTCTNGGCCTTTGCTGGAATCCTTGTAGGTGATTCATGGATGATTTACATGTTCACAAGATCTTATGAGTATGTATATGTAAGATCTGTTCCACAGCTATAATATTATAAGGAAGCTTGGATCACGGGGAGTTGTCCTNCTTTGTGCTTGAAATTGTCGCCTTGGATAAGATTTGATGCCCATCCATTGACACTGGAAATTGC]
[+] EMBL BM038550 [TGCTCGAGCAGGGTGTCACCTTACATAGTAACTCAAGGATCATGACCACACGCCAACCCTTACAACCCGGGGATGCAGAGACACAATCACCAGGTCAGGGATGTGGGATCCGTGATTACTACTGCACCTGCCTGGCTTGTTTTGCTGGGATGATCTTGCTATGAGAGGAATTCGCACGGAGTGGCTACCTGGAGATCCACAATCTTGGGTTTGTTAATTTTTTTTTGGTTGTTTCTTTGTACCCTGCTCTTGCTGGTTGCTGTTGCTGTGCTGTCTGTTATGGTTCTNGGCCTTTGCTGGAATCCTTGTAGGTGATTCATGGATGATTTACATGTTCACAAGATCTTATGAGTATGTATATGTAAGATCTGTTCCACAGCTATAATATTATAAGGAAGCTTGGATCACGGGGAGTTGTCCTNCTTTGTGCTTGAAATTGTCGCCTTGGATAAGATTTGATGCCCATCCATTGACACTGGAAATTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11373#1 ------------------------------------------------------------
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 TCACAGGATACAGATCCAGACTCCAGAGCCCCATAGAGAGAGAAAATTCAGCTACTCCTA 60
consensus_11373#1 ------------------------------------------------------------
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 GATGAGACCCTGAGTGAGAGAAGAAGCAAAGAAACAACAACAAGAAGAAAGAGAGATCTC 120
consensus_11373#1 ------------------------------------------------------------
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 CCTCTTCCATCAACAATGCCACCACCATCAATCACCACCACCACCACCAAGCTGTTCTTG 180
consensus_11373#1 ------------------------------------------------------------
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 CTCCTCCTCCTCCTCCATGGAGGCCACTGCCTGAAGAGCTTGGACATGGCCATGGAGATG 240
consensus_11373#1 ------------------------------------------------------------
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 GAGATGGATTCAGAGGCTCACAGCAGGATGCTGTGGGAGTCCAGCAGCAGCAACGGCAGG 300
consensus_11373#1 -----------CTACGACNCCTTGAGGACCGACGTGGTNCCGTGCTCGAGGCAGGGTGNC 49
consensus_11373#2 ------------------------------------------TGCTCGAG-CAGGGTGTC 17
consensus_11373#0 AGGTACATCAGCTACGACGCCCTGAGGAGCGACGTGGTGCCGTGCTCGAGGCAGGGTGTC 360
******** ******* *
consensus_11373#1 -CCTTAC--TATAACTGCAGGATCATGACCAC-CGCCAACCCTTACA-CCCGGGGATGC- 103
consensus_11373#2 ACCTTACATAGTAACTCAAGGATCATGACCACACGCCAACCCTTACAACCCGGGGATGCA 77
consensus_11373#0 -CCTTAC--TATAACTGCAGGATCATGACCAC-CGCCAACCCTTACA-CCCGGGGATGC- 414
****** ***** ************** ************** ***********
consensus_11373#1 --GAGACCATCACCAGGTGCAGGGATGTGG-ATCCGTGATTACTACTGCAC-TGCCTG-C 158
consensus_11373#2 GAGACACAATCACCAGGT-CAGGGATGTGGGATCCGTGATTACTACTGCACCTGCCTGGC 136
consensus_11373#0 --GAGACCATCACCAGGTGCAGGGATGTGG-ATCCGTGATTACTACTGCAC-TGCCTG-C 469
** ** ********** *********** ******************** ****** *
consensus_11373#1 TTGTTTTGCTGG-ATGATCTTGCCATGAGAGGAATT-GCA-GGAGTGGCTACCTG-AGAT 214
consensus_11373#2 TTGTTTTGCTGGGATGATCTTGCTATGAGAGGAATTCGCACGGAGTGGCTACCTGGAGAT 196
consensus_11373#0 TTGTTTTGCTGG-ATGATCTTGCCATGAGAGGAATT-GCA-GGAGTGGCTACCTG-AGAT 525
************ ********** ************ *** ************** ****
consensus_11373#1 GCA-AATCTTGGTTTT--TATTTTTTTTTTGTT--TTTCTTT-TACCCT-CTCTT----- 262
consensus_11373#2 CCACAATCTTGGGTTTGTTAATTTTTTTTTGGTTGTTTCTTTGTACCCTGCTCTTGCTGG 256
consensus_11373#0 GCA-AATCTTGGTTTT--TATTTTTTTTTTGTT--TTTCTTT-TACCCT-CTCTT----- 573
** ******** *** ** ********** * ******* ****** *****
consensus_11373#1 ---CTGTT-CTTTCTTCTTCTTTATG---TTCTGCATTTGCTG-AATCATTGTAGGTGAT 314
consensus_11373#2 TTGCTGTTGCTGTGCTGTCTGTTATGGTTCTNGGCCTTTGCTGGAATCCTTGTAGGTGAT 316
consensus_11373#0 ---CTGTT-CTTTCTTCTTCTTTATG---TTCTGCATTTGCTG-AATCATTGTAGGTGAT 625
***** ** * * * ***** * ** ******* **** ***********
consensus_11373#1 TCATGGATGATTTACATGTTCA-AAGATCTTATGAGTATGTATATGTAAGATCTGGTTGC 373
consensus_11373#2 TCATGGATGATTTACATGTTCACAAGATCTTATGAGTATGTATATGTAAGATCTGTTCCA 376
consensus_11373#0 TCATGGATGATTTACATGTTCA-AAGATCTTATGAGTATGTATATGTAAGATCTGGTTGC 684
********************** ******************************** *
consensus_11373#1 AAGCTATAATATTATAAGGAAGCTTGGATCA-GGGGAGGTGTGCTGCTTTGTGCTTGAAA 432
consensus_11373#2 CAGCTATAATATTATAAGGAAGCTTGGATCACGGGGAGTTGTCCTNCTTTGTGCTTGAAA 436
consensus_11373#0 AAGCTATAATATTATAAGGAAGCTTGGATCAAAAAAAAAAAAA----------------- 727
****************************** *
consensus_11373#1 TTGTCGGCATTGATAAGATTTGATGCC-ATCAATTGACA-TGGAAATTGCTCCTTTTCTT 490
consensus_11373#2 TTGTCGCCTTGGATAAGATTTGATGCCCATCCATTGACACTGGAAATTGC---------- 486
consensus_11373#0 ------------------------------------------------------------
consensus_11373#1 CGTTTGTACAATTGTACTGGTATGTTAAAGTTGGTATACGCAATTGAGCACGTTGAATCT 550
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 ------------------------------------------------------------
consensus_11373#1 TTTCGGATGCTCATCGTTTCTTCAATTTTTTTTAATAGCTAGTCGTGTGATGAAACCTGG 610
consensus_11373#2 ------------------------------------------------------------
consensus_11373#0 ------------------------------------------------------------
consensus_11373#1 TTCGTTCTTGTTTAATAAAGATATTGCTTTGCAGTGTTTTCAAAAAAAAAA 661
consensus_11373#2 ---------------------------------------------------
consensus_11373#0 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||