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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11376#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2168 fasta sequence
[GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTTTATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAG--GTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATTATCCCACACATATCAATAAGAAACCAA]
[+] EMBL AK121151 [GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTTTATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTT ]
[+] EMBL CA761124 [ TTTTTTTTTTAAGTGAATTTATCTATGCAGTGGATTCTTCATGTAGTAAAATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAGGTGTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTT ]
[-] EMBL CA766336 [ AGATCTAGTAAATTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCACATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGCAAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATTTGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTTTCAGGGCGTAGTACTCGTGCAGACAG GTGTGTGTATAGTACAGTAGTACATGTGTGATTATAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATTATCCCACACATATCAATAAGAAACCAA]
consensusID : consensus_11376#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1579 fasta sequence
[CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCCTTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGGCGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACCGCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGATCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAATCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA]
[+] EMBL AK110902 [CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCCTTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGGCGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACCGCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGATCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATCAGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGGCAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCACGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCAGCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAATCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA]
consensusID : consensus_11376#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1176 fasta sequence
[GCCTATCCAAGTGGAACGCAACAGAGGCGTCGTCTCCTCCTCTCCTCGACCTCTCGCGGTTGGAGGTCTCGCGCGCGCGTGAGGCAACAAGTGCCCGTTCGATCGACCGGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCGTGCACCCCCGCCGCTTGCGCTGTGTTGGTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAGTCGCGGAGGCGCTGTCCATCGGCGTGAACTACGGGCAGATCGCGAACAACATCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGCTGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA]
[+] EMBL AK073663 [GCCTATCCAAGTGGAACGCAACAGAGGCGTCGTCTCCTCCTCTCCTCGACCTCTCGCGGTTGGAGGTCTCGCGCGCGCGTGAGGCAACAAGTGCCCGTTCGATCGACCGGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCGTGCACCCCCGCCGCTTGCGCTGTGTTGGTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAGTCGCGGAGGCGCTGTCCATCGGCGTGAACTACGGGCAGATCGCGAACAACATCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGCTGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA]
[+] EMBL AK072635 [ CCTCGGCACGGGCGTGGAGTTCGTGGTCGGCATCGGCAACGAGGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGGCTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTCGGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTGCGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACCGCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCCTCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTCCTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAGTACGTGCTGTTCCAGCCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGACAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACACGGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGCCGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGATGAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTTCAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGACGGCACGCCGGTCTA]
consensusID : consensus_11376#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence
[CCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAAAAA]
[+] EMBL AU174632 [CCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAAAAGCGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTAT ]
[+] EMBL AU174633 [ CGCGCGAAAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGAGAGTATATACTTTTGTCCAGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGCTGCTGAAGATTCCCATAGAAGAAAGCAAGGGATGCTTCGGGAGCACAAGATCATTCAGATTTCAGAACGATAGGATCGCCCATGCATTTAGTGTGTCTTTTTATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAAGTAGAAACTAACGAAAGCTTCGAGATGATACAAGTCCAGATCTGTAATATACGACCTTGGTTTGATACAATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11376#0 GCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACACAACACG 60
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 AGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTTCAACCAC 120
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 AGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGCAGCCGTC 180
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 GACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAGCGGCATC 240
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 AGCTCAAGGCATGTCAATCGGGATCAACTACGGGCAGATCGCGGACAACCTCCCTTCTCC 300
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 GACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGCTCTACGACGC 360
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCGTCGGCATCGG 420
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CAACGAGAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGGGTGCAGCAGCA 480
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CGTCCGCCCCTACCTCCCGAGCGCGCGCATCACCTGCATCACCGTCGGGAACGAGGTGTT 540
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATGCAGTCCGTGTACAA 600
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 ------------------------------------------------------------
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACGGCGCACTCCCTGGA 660
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 -------------CCCCGATCCATCCAAATTCCAAGACAAGCTCCTCGTGCTTTCCTGCC 47
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCCGACGCCGTGCCGTA 720
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 TTGCCGCTGCGTCGCTCTCGCTCTCCACGGCACGCGCACGCAACGCGCGACGCGGTCCGG 107
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTCCTGATCAACTGCTA 780
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CGCTAGCTGAGCTGTGACTAGCCGAGCAAACACCCGCGGCTCGCCACCCCGACGGTTACC 167
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 CCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAGTACGTCCTCTTCCA 840
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 GCCGCGCGCCACCCCCCACCCGCACTGCATAAAAACGCCCCACCTCCGCCGAATCGCCGA 227
consensus_11376#2 -------------------------------------------------------GCCTA 5
consensus_11376#0 GCCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGACAACATGCTGTACGC 900
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 TCCGCGCGCTGCTACCACCACAAACATTCTACCGCGGGACACACACTCGTCTTTACCACA 287
consensus_11376#2 TCCAAGTG----GAACGCAACAGAGGCGTCGTCTCC-----TCCTCTCCTCGACCTCTCG 56
consensus_11376#0 CCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACACCGACGTCGACGTGAA 960
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CAACACGAGCACGCGCGCGAGAGAGAAAGGGGGAGATAAGAGCAGTTTGACTTCGAGCTT 347
consensus_11376#2 CGGTTGGAGGTCTCGCGCGCGCGTGA-----GGCAACAAGTGC---CCG--TTCGA---T 103
consensus_11376#0 GATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGCCGGCGCGACGCCGGA 1020
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CAACCACAGCCGAGTGATCCATGGCGGCAGGGGAGCAACCGGGAACTGGGTCGCCGCCGC 407
consensus_11376#2 CGACC--GGCAAGGATGGCGACGGCAGCGAGAGCGGCGTCG-----TGCACCCCCGCCGC 156
consensus_11376#0 GTACGCCGGGATCTA-CATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGG-ACG 1078
consensus_11376#3 -----CCGGGATCTA-CATCGGCAACCTCCTGCGGAGGATCGAGATGAAGCAGGGG-ACG 53
consensus_11376#1 AGCCGTCGACCCGCCTCTTCCTCCTCGTCCTCGCAGTCATCCTCACAGATCAAGTGCTAG 467
consensus_11376#2 TTGCGCTGTGTTG----GTCATCCCCATCCTAGTCCTGATCATGGCAGGGCAAGTGCGAG 212
* ** * * **** *** ** * * *
consensus_11376#0 CCGCTGAGGCCGTCGT--CGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACC 1136
consensus_11376#3 CCGCTGAGGCCGTCGT--CGCCCATCGACGTCTACGTCTTTGCGCTGTTCAACGAGAACC 111
consensus_11376#1 CGGCATCAGCTCAAGGCATGTCAATCGGGATCAAC---TACGGGCAGATCGCGGACAACC 524
consensus_11376#2 TCGCGGAGGCGC------TGTCCATCGGCGTGAAC---TACGGGCAGATCGCGAACAACA 263
** ** * * **** * ** * * ** * ** * ***
consensus_11376#0 TCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGG 1196
consensus_11376#3 TCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGACGGCACGCCGG 171
consensus_11376#1 TCCCTTCTCCGACCAGGGTCTCGGGTCTCCTCCGGTCAATGCAGATCAGCAAGGTGAAGC 584
consensus_11376#2 TCCCGTCGCCGTCGCGGGTGTCGTGGCTGCTCCGGTCGCTCAAGATCAGCAAGGTGAAGC 323
** * * * * * * ** * * * * * *
consensus_11376#0 TCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACG-AATCGAAAAGCGCGCGA 1255
consensus_11376#3 TCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACG-AATCGAAAAGCGCGCGA 230
consensus_11376#1 TCTACGACGCCGACCAGAACGTCCTGAGCGCGTTCCTCGACACGGGCGTGGAGTTCGTCG 644
consensus_11376#2 TGTTCGACGCCGACCCGCACGTCCTGCGCGCGTTCCTCGGCACGGGCGTGGAGTTCGTGG 383
* * ***** ** ** * ** * ** * * * ** ** **
consensus_11376#0 AAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGA 1315
consensus_11376#3 AAGGCGGTTTCAGTGTTAGCTCTCATCGCCATTGCATCGATCACTCTCATCTTATCCTGA 290
consensus_11376#1 TCGGCATCGGCAACGA-GAACGTGTCGGCGATGGTGGACCCGGCGGCGGCGCAGGCGTGG 703
consensus_11376#2 TCGGCATCGGCAACGA-GGCCGTCCCGGCGATGGCCAGCCCCGCGGCGGCGGAGTCGTGG 442
*** ** * * ** ** * * * **
consensus_11376#0 GAGTA--TATACTTTTGTCC--AGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGC 1371
consensus_11376#3 GAGTA--TATACTTTTGTCC--AGTTCAGTAAAGTAGAGTAAAGGTGCAGCATCTCTTGC 346
consensus_11376#1 GTGCAGCAGCACGTCCGCCCCTACCTCC---CGAGCGCGCGCATCACCTGCATCACCGTC 760
consensus_11376#2 CTGCAGCTGCACGTGGTGCCGCACCTCCGCGCCGGCGCGCGCATCACCTGCATCACCGTC 502
* * ** * ** * ** * * * * ***** * *
consensus_11376#0 TGCTG-AAGATTCCCATAGAAGAAAGCAAGGTAAGATAGTTGGAAGACAACCAGCATTTT 1430
consensus_11376#3 TGCTG-AAGATTCCCATAGAAGAAAGCAAGG----------------------------- 376
consensus_11376#1 GGGAACGAGGTGTTCAAGGGCAACGACACCGCGCTCAAGGCCAACCTCCTGCCGGCGATG 820
consensus_11376#2 GGCAACGAGGTGTTCAAGGGCAACGACACCGCCCTCCAGGCCAGCCTCCTCCCGGCGTTG 562
* ** * ** * * ** *
consensus_11376#0 TATCTATGTAGTTTTTTTTTTGAGTGAATTTATCTATGTAGTGGATTCTTCATGTAGTAA 1490
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CAGTCCGTGTACAACGCCGTCGTCGCGCTCGGGCTGCAGGGCCAGGTGAACGTCACGACG 880
consensus_11376#2 CGGTCCGTGCACCAGGCGCTCGGCGCGCTCGGCCTCCAGGGCCGCGTCAACGTCACCACC 622
consensus_11376#0 AATAGCTTGTTTTGGATTAAGAAATAGAGAAAATTCTTCAAATTTGGAAGATCTAGTAAA 1550
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 GCGCACTCCCTGGACATCATGGGCAGCTCCTACCCTCCCTCCGCCGGCGCGTTCCGGCCC 940
consensus_11376#2 GCGCACTCGCTGGACATCATGGGCGTGTCCTACCCGCCGTCCGCCGGTGCGTTCCACCCC 682
consensus_11376#0 TTCTGATACTATAGTAGTTTGCCATATTAGTAGGAATTAATCACCTATATGCTCATGCCA 1610
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 GACGCCGTGCCGTACATCCAGCCGCTGCTCAACTTCCTGTCCATGGCGGGGTCCCCGTTC 1000
consensus_11376#2 TCCGCCGCGCCGCACCTGCAGCCGTTCCTGGCCTTCCTGTCGGCGGCGAGGGCGCCGTTC 742
consensus_11376#0 CATACTAGTATGCTCAAAGATTAACCTAATATTACATTACTCCAGGG-ATGCTTCGGGAG 1669
consensus_11376#3 ----------------------------------------------G-ATGCTTCGGGAG 389
consensus_11376#1 CTGATCAACTGCTACCCGTACTTCGCCTACAAGGCCGACCCGGGCAGCGTGCCGCTGGAG 1060
consensus_11376#2 CTCATCAACTGCTACCCGTACTTCGCCTACAAGGACGACCCGGCGCGCGTGCCGCTGGAG 802
* *** * ****
consensus_11376#0 CACAAGATCATTCAGATTTCAGAACGATAGGATCG-CCCATGCATTTAGTGTGTCTTTTT 1728
consensus_11376#3 CACAAGATCATTCAGATTTCAGAACGATAGGATCG-CCCATGCATTTAGTGTGTCTTTTT 448
consensus_11376#1 TACGTCCTCTTCCAG-CCCAACGCCGGCGTGACCGACCCAAACACGAAGCTCAACTACGA 1119
consensus_11376#2 TACGTGCTGTTCCAG-CCCAACGCCGGCGTCGTCGACCCGCGCACGAGGCTCGTCTACGA 861
** * * *** * ** ** *** ** * **
consensus_11376#0 ATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAA-GT 1787
consensus_11376#3 ATTTTTATTTGATACTAGCATTTAGGGGCTAAATTTGGCACAGATAGTGATGTAGAA-GT 507
consensus_11376#1 CAACATGCTGTACGCCCAGATCGACTCAGTGTACGCCGCGATGCAGGCGCTGGGCCACAC 1179
consensus_11376#2 CAACATGCTGTACGCGCAGGTGGACGCCGTGTACGCGGCGATCCAGGCGATGGGGCACAC 921
* * * * * * * * ** * * ** *
consensus_11376#0 AGAAACTAACG--AAAGCTTC-GAGAT--GATACAAGTCCAGATCTGTAATATACGACCT 1842
consensus_11376#3 AGAAACTAACG--AAAGCTTC-GAGAT--GATACAAGTCCAGATCTGTAATATACGACCT 562
consensus_11376#1 CGACGTCGACGTGAAGATCTCCGAGACCGGGTGGCCGTCCAGGGGCGACCCCGACGAGGC 1239
consensus_11376#2 GGACATCGACGTGAAGGTGTCGGAGACCGGGTGGCCGTCCCGCGGCGACCCCGACGAGGC 981
** *** ** ** **** * * **** * * ****
consensus_11376#0 TGGTTTGATAC-AATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTATGC 1901
consensus_11376#3 TGGTTTGATAC-AATTCTTGTTGATTAATTTCTTATTGATACATTTTGATTTGTTTAAAA 621
consensus_11376#1 CGGCGCGACGCCGGAGTACGCCGGGATCTACATCGGCAACCTCCTGCGGAGGATCGAGAT 1299
consensus_11376#2 CGGCGCGACGCCCGAGAACGCCGGGACGTACATCGGGAACCTCCTCCGGAGGATCGAGAT 1041
** ** * * * * * * * * * *
consensus_11376#0 AAACTGTATATTGTATATATCAGTGGGACAATCATCGGTACATAAGTTCAGAGAGATATT 1961
consensus_11376#3 AAA--------------------------------------------------------- 624
consensus_11376#1 GAAGCAGGGGACGCCGCTGAGGCCGTCGTCGCCCATCGACGTCTACGTCTTTGCGCTGTT 1359
consensus_11376#2 GAAGCAGGGCACGCCGCTGCGGCCGCAGGCGCCCATCGACGTCTACGTCTTCGCGCTCTT 1101
**
consensus_11376#0 TGTAGTATTGTACATATTATGTGGCCCTTTTCGATGTGTAATAATTTTGATCTGAGAGTT 2021
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CAACGAGAACCTCAAGCCGGGGCCGGCATCCGAGCGGAACTACGGGCTGTTCTACCCCGA 1419
consensus_11376#2 CAACGAGAACCTCAAGCCCGGCCCGGCGTCGGAGCGGAACTACGGCCTCTTCTACCCCGA 1161
consensus_11376#0 TCAGGGCGTAGTACTCGTGCAGACAGGTGTGTGTATAGTACAGTAGTACATGTGTGATTA 2081
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 CGGCACGCCGGTCTACGACGTCGGCCTGCGCGGGTATCTCCCGCCGATGGACGAATCGAA 1479
consensus_11376#2 CGGCACGCCGGTCTA--------------------------------------------- 1176
consensus_11376#0 TAAAAGTTGCAAAATTGTAACCTAATTAATACCCCCTATGTTTCAACATTTTTACTTATT 2141
consensus_11376#3 ------------------------------------------------------------
consensus_11376#1 AAGCGCGCGAAAGGTAGGCGGTGTGAACTGTGAACTCGATCGTTTTTTTCTCCTTCAAAA 1539
consensus_11376#2 ------------------------------------------------------------
consensus_11376#0 ATCCCACACATATCAATAAGAAACCAA------------- 2168
consensus_11376#3 ----------------------------------------
consensus_11376#1 TCTGCAAAACTGTTACAAACTTTCTGCTGCATGTCACGCA 1579
consensus_11376#2 ----------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||