These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 665 fasta sequence [TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT-GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT-GTGCCAATACATGGCACAGCAGTAAGCAT-CTGATAAATTCT-TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC--GGTTCCC-GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTTTGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTCTTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCAATACTCC] [+] EMBL CA762513 [TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCTATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCCATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAAAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAAAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTTTGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTCTTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCAATACTCC] [-] EMBL AU096653 [ TTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATGGTAGTCGTGGTTGTAGATGAAACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTT ] [-] EMBL BI799474 [ TTTTTTTTTTGGGAAGTCACAACCAGTGACCCAATCTCTTGGCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGGTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCTGTGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACCGGGGTTCCCGGGTCTCCTCTTAATTGTTGTCGTCTTCCACA ] [-] EMBL BI798795 [ TTTTTTTTTTGGGAAGTCACAACCAGTGACCCAATCTCTTGGCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGGTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAA TGTTGTCGTCTTCCACA ] [-] EMBL CA766795 [ TTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCATGCTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTC ] [+] EMBL CF294047 [ TTTTTTGGAAGTCACAACCAGTGATCAAATCTCTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTTAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGTTCTTTCATGGCACAGCAGTAATCTT CTGATAAATTCT TGCTTCTTTTTTTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAATTGTTGTCGTCTTCCACAGCTTTCCATCTCTCATGGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGC ] [-] EMBL BI808824 [ tttTT GCATTCAAACATGTTAAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTAAATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCT GTGCCAATACATGGCACAGCAGTAAGCAT CTGATAAATTCT TGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGATCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACC GGTTCCC GGTCTCCTCTTAA TGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCG GGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAAACGGATCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATTCGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAcat ] consensusID : consensus_11377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [TTGAGACCTGGGGGGAGGCGCGGTCCCGGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGATCCTGGACATTCAGTACAAGCACATCTTTACCAC] [-] EMBL OS37926 [TTGAGACCTGGGGGGAGGCGCGGTCCCGGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGGTTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGATCCTGGACATTCAGTACAAGCACATCTTTACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11377#0 TTTTTTTTTTTTTTTTGGAAGTCACAACCAGTGACCCAATCTCTTGCATTCAAACATGTT 60 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 AAAAATGTTATCAAATGATCAAATGAAAACATAGATGATAATTTACATGTGTACATCCTA 120 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 AATAGAACCTAAATCGGCACGTTTAGCCGATTTAGGATCGCCTGTGCCAATACATGGCAC 180 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 AGCAGTAAGCATCTGATAAATTCTTGCTTCTGGTCCTGAAGCAACCACATGTTACTGGGA 240 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 TCCGTTCTTCTTCATCCTCAGAAAGCTAACTAATGTGAGCCTGGAGGGAGCACCGGTTCC 300 consensus_11377#1 ---------------------------------TTGAGACCTGGGGGGAGGCGCGGTCCC 27 * ***** ***** **** ** consensus_11377#0 CGGTCTCCTCTTAATTG-TTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGG 359 consensus_11377#1 GGGCTCCTCCTAAATTGGTTGTCGTCTTCCACAGCTTTCCATCTCTCATTGTAGTCGTGG 87 ** * ** ***** ****************************************** consensus_11377#0 TTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTGAA-ACGGA 418 consensus_11377#1 TTGTAGATGATACGTTATAGAACTCACATACACCATGCAGAAGCAACCTCTAATCAAGGA 147 *************************************************** * * *** consensus_11377#0 TCCTGGACATTCAGTACAAGCACATCTTTACCACTAGCATCTTCAATGAAGGCCCTAATT 478 consensus_11377#1 TCCTGGACATTCAGTACAAGCACATCTTTACCAC-------------------------- 181 ********************************** consensus_11377#0 CGGTCCTCATATATGTCAAGCAGATCTGGGAGGAAATTTCTCTTTATGGCTTCTCTTGTT 538 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 TGGCGATCTATACGATGCCAAGCATTGAGAGCAATCAATTCATCGCTGTCCACATGATTC 598 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 TTCTGTTTTGGAGAAGATTGTTTCATCTGTTGCATCAATCGGGCCTCAACGTCCACGTCA 658 consensus_11377#1 ------------------------------------------------------------ consensus_11377#0 ATACTCC 665 consensus_11377#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||