cluster # 114

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Oryza sativa
cluster # 114 cluster # 114 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_114#0 length = 457 sequences # 1

consensus_114#1 length = 440 sequences # 1

consensusID : consensus_114#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTGACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGGAGACTTGGCACAGCAAGCCAAAGTTTGCGCATGTTTCAAACGGAATGTTGAGAAGCATCGATTTAATAGTAATTTAGTTACTAAGAGACAATATGTTGTTGAGCTATCAGTGTAATAGTAACTTGGTTACTATGAGAAACTTTGTGGCAAGATCAAT]

[+] EMBL AK121467             [GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTGACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGGAGACTTGGCACAGCAAGCCAAAGTTTGCGCATGTTTCAAACGGAATGTTGAGAAGCATCGATTTAATAGTAATTTAGTTACTAAGAGACAATATGTTGTTGAGCTATCAGTGTAATAGTAACTTGGTTACTATGAGAAACTTTGTGGCAAGATCAAT]




>consensus_114#0
GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACC
TCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAAT
CCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCG
AGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTG
ACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGG
AGACTTGGCACAGCAAGCCAAAGTTTGCGCATGTTTCAAACGGAATGTTGAGAAGCATCG
ATTTAATAGTAATTTAGTTACTAAGAGACAATATGTTGTTGAGCTATCAGTGTAATAGTA
ACTTGGTTACTATGAGAAACTTTGTGGCAAGATCAAT

consensusID : consensus_114#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [ATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCGATCGCTTGGCTTTTTACTCACTCTAATCTAATCTTGATACTATCGTTGAATTGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGCGCAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGGCTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG]

[+] EMBL C72724               [ATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCGATCGCTTGGCTTTTTACTCACTCTAATCTAATCTTGATACTATCGTTGAATTGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGCGCAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGGCTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG]




>consensus_114#1
ATGGAGGAGAGCAGTATCCACGCCGCCACCTCCTCCATAGCAATTCTACGCCGTCGTCGT
CTCTTCCACCGTGCAGCCCCTTGTCCCAATCCTCCACGGCGGCCTGCGGTCCGGGACTGG
AGTGCTGACATCCAATTTGCAGTGGCGGCGAGGAGGAGAGGCGACGGTCATGGTGCTCGG
TGGAGCAGTTGAATGGTGCATGTTTGTTCGATCGCTTGGCTTTTTACTCACTCTAATCTA
ATCTTGATACTATCGTTGAATTGATCTGAATCCACCCGTCTGCACGTACACATACGTGCC
CTCGATCGAGTGTTAGATTGCGCAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCT
GCTCGATTGATCTCTATAGGCTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTG
GTGGTTAAGNCAACTAATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_114#0      GTTTTTTATGGATCTCGAGATCGACAATGCATGGAGGAGAGCAGTATCCACGCCGCCACC 60
consensus_114#1      ------------------------------ATGGAGGAGAGCAGTATCCACGCCGCCACC 30
                                                   ******************************

consensus_114#0      TCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAAT 120
consensus_114#1      TCCTCCATAGCAATTCTACGCCGTCGTCGTCTCTTCCACCGTGCAGCCCCTTGTCCCAAT 90
                     ************************************************************

consensus_114#0      CCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCG 180
consensus_114#1      CCTCCACGGCGGCCTGCGGTCCGGGACTGGAGTGCTGACATCCAATTTGCAGTGGCGGCG 150
                     ************************************************************

consensus_114#0      AGGAGGAGAGGCGACGGTCATGGCGCTCGGTGGAGCAGTTGAATGGTCCAGGGAGGAGTG 240
consensus_114#1      AGGAGGAGAGGCGACGGTCATGGTGCTCGGTGGAGCAGTTGAATGGTGCATGTTTGTTCG 210
                     *********************** *********************** ** *   *   *

consensus_114#0      ACGGCAAGGATGGCTTCATGGTGGTGACGACGATAATGAGGCAAAGCACAGATTCTGGGG 300
consensus_114#1      ATCGC----TTGGCTTTTTACTCACTCTAATC-TAAT----CTTGATACTATCGTTGAAT 261
                     *  **     ******  *  *       *   ****    *     **      **   

consensus_114#0      AGACTTGGCACAGCAAGCCAAAGTTTGCGCAT----GTTTCAAACGGAATGTTGAGAAGC 356
consensus_114#1      TGATCTGAATCCACCCGTCTGCACGTACACATACGTGCCCTCGATCGAGTGTTAGATTGC 321
                      **  **   *  *  * *      * * ***    *      *  ** ****     **

consensus_114#0      ATCGATTTAATAGTAATTTAGTT-ACTAAGAGA-CAATATGTT--GTTGAGCTATCAGTG 412
consensus_114#1      G-CAATTAGTTGGTGTTTTATTTTGCTACATGATCTGTCTGCTCGATTGATCTCTATAGG 380
                       * ***   * **  **** **  ***   ** *  * ** *   **** ** *    *

consensus_114#0      TAATAGTAACTTGGTTACTATGA--GAAAC-------TTTGTGGCAAGATCAAT------ 457
consensus_114#1      CTATAGCTTCTGNCTTTCTTTGGAGGAAGCACAGCTGCTGGTGGTTAAGNCAACTAATTG 440
                       ****   **   ** ** **   *** *        * ****  *   ***