These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 518 fasta sequence [ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC-AAATATTACCAAGGAACAAGTCATGGATTAT-GTCGC-AAACAGGTTGCGCCATACAAG-AAGGTG--CGACGAG-TGG-CTTTT-GTCACTGC-AATA-CC-AAAATCGCCTG-CAGGGAAGATCCTTCGGCGGGAGCTTGAGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA-GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTA-CC-ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATAAAAAAATGTCTACACCGTAAAAAAAAAA] [+] EMBL BM420248 [ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC AAATATTACCAAGGAACAAGTCATGGATTAT GTCGC AAACAGGTTGCGCCATACAAG AAGGTG CGACGAG TGG CTTTT GTCACTGC AATA CC AAAATCGCCTG CAGGGAAGATCCTTCGGCGGGAGCTTGAGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTA CC ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATAAAAA ] [+] EMBL AU223114 [ GCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTC AAATATTACCAAGGAACAAGTCATGGATTAT GTCGCAAAACAGGTTGCGCCATACAAG AAGGTG CGACGAG TGG CTTTT GTCACTGC AATA CC AAAATCGCCTG CAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTA CCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA ] [+] EMBL BI813803 [ CAACCAGGTTCAAAATATTACCAAGGAACAAGTCATGGATTATGGTCGC AAACAGGTTGCGCCATACAAG AAGGTG CGACGAG TGG CTTTT GTCACTGC AATACCC AAAATCGCCTGCCAGGGAAGATCCTTCGGCGGGAGCTTGAGCA CAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCT CAGTAGTCTA GTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTTTACCC ATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCCAGTATATTTTAGCTCAACAACTCGGCCTCCAAATGTCCAATCATATTTCCATGTCTACACCGTAAAAAAAAAA] [+] EMBL AU108438 [ tgcnngcCCATACAAGAAAGGTGTCCGACGAGTTGGCCTTTTGGTCACTGCAAATA CCAAAAATCGCCTGTCAGGGAAGAT CTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTANGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTA CCAATTAACA CTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA ] consensusID : consensus_11412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence [GATGCGGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA] [+] EMBL AU173984 [GATGCGGCAGTTATCCCATATCCAGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA] [+] EMBL AU197839 [ CTGGGGACCNACCAATGGCTTTCATAGTAAGGCAACCAGGTTCCAATATNCCCAAGGAACAAGTCATGGATTATGTCNCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCNCTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCNCCAAGCTTTGAAATGTGTAATTTGCNGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAAAAAAAAAAAAAAAA] consensusID : consensus_11412#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [AGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCTCGAAGAACCAGCAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGCTGGTATAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA] [+] EMBL AU223163 [AGATGAAGAAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGGAACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCTCGAAGAACCAGCAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGCTGGTATAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAAAA] consensusID : consensus_11412#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 288 fasta sequence [NGTTGCCAAGCCAAGGCCCTTGTCCGATTGGGTGCCTTCCAAAGCCTTTTGNAAATTGTGTNAAATTTTGGCTTGCCAGTTAGNTCTAGTTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA] [+] EMBL AU108451 [NGTTGCCAAGCCAAGGCCCTTGTCCGATTGGGTGCCTTCCAAAGCCTTTTGNAAATTGTGTNAAATTTTGGCTTGCCAGTTAGNTCTAGTTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATTAACACTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACACGGCCTCCAAATGTCCAATCATAAAAA] consensusID : consensus_11412#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [CAGTTGTCTTCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATGNANGTTTGNTTTTGTTTNTCCTAGNTACAATCTTTCCAGGGNTGNGANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAACCNAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU174314 [CAGTTGTCTTCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAATGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTTTACCAATGNANGTTTGNTTTTGTTTNTCCTAGNTACAATCTTTCCAGGGNTGNGANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAACCNAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11412#0 ATTCTGCAGTCCCCATCCTGGGAATTCGCTGATGCGCAGTTATCCCATATCCAGATGAAG 60 consensus_11412#2 ----------------------------------------------------AGATGAAG 8 consensus_11412#3 ------------------------------------------------------------ consensus_11412#1 -----------------------------GATGCGGCAGTTATCCCATATCCAGATGAAG 31 consensus_11412#4 ------------------------------------------------------------ consensus_11412#0 AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 120 consensus_11412#2 AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 68 consensus_11412#3 ------------------------------------------------------------ consensus_11412#1 AAGCTGGGGAACTACCAATGGCTTTCATAGTAAGGCAACCAGGTTCAAATATTACCAAGG 91 consensus_11412#4 ------------------------------------------------------------ consensus_11412#0 AACAAGTCATGGATTATGTCGCAAA-CAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 179 consensus_11412#2 AACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 128 consensus_11412#3 ------------------------------------------------------------ consensus_11412#1 AACAAGTCATGGATTATGTCGCAAAACAGGTTGCGCCATACAAGAAGGTGCGACGAGTGG 151 consensus_11412#4 ------------------------------------------------------------ consensus_11412#0 CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGAGC 239 consensus_11412#2 CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCAGATGATTTTCTCTTTCCT 188 consensus_11412#3 ---------------------NGTTGCCA--AGCCAAGGCCCTTGTCCGATTGGGTGCCT 37 consensus_11412#1 CTTTTGTCACTGCAATACCAAAATCGCCTGCAGGGAAGATCCTTCGGCGGGAGCTTGTGC 211 consensus_11412#4 ------------------------------CAGTTGTCTTCCTTCGGCGGGAGCTTGTGC 30 ** * * consensus_11412#0 AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 296 consensus_11412#2 CGAAGAACCAG-CAATCACCACCTCCAACAAGGCCGACTGCTTCTGATCGGAAGC--TGG 245 consensus_11412#3 TCCAAAGCCTTTTGNAAATTGTGTNAAA------TTTTGGCTTGCCAGTTAGNTC--TAG 89 consensus_11412#1 AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 268 consensus_11412#4 AGCAGGCCCTGTCGATGGGTGCCTCCAA---GCTTTGAAATGTGTAATTTGCTGCAGTAG 87 * ** * ** * * * * * consensus_11412#0 TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATATGCCTCAAGCTT 355 consensus_11412#2 TATAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 304 consensus_11412#3 TTAAGAAGAAATTATTTTTGCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 149 consensus_11412#1 TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 327 consensus_11412#4 TCTAGTAGAGAATATTTT-GCTTACATATAGTGAACTGGAGATTTATAGGCCTCAAGCTT 146 * ** *** * ****** ***************************** *********** consensus_11412#0 TACCA-TTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 414 consensus_11412#2 TACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 364 consensus_11412#3 TACCAATTAACAC-TCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 208 consensus_11412#1 TACCAATTAACNCCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTTGGAGGACTACG 387 consensus_11412#4 TACCAATGNANGTTTGNTTTTGTTTNT------CCTAGNTACAATCTTTCCAGGGNTGNG 200 ***** * * * *** * * * * * *** *** * * consensus_11412#0 AAAATTATGTAAATTCCCATGTTCCAGAGCCAG-TATATTTTAGCTCAACAACTCGGCCT 473 consensus_11412#2 AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAACAACACGGCCT 423 consensus_11412#3 AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAACAACACGGCCT 267 consensus_11412#1 AAAATTATGTAAATTCCCATGTTCCAGAGCTAG-TATATTTTAGCTCAAAAAAAAAAAAA 446 consensus_11412#4 ANATTGTTTTTTTTTTNTGCTATCAAANATAAACTCCGGNNCTGTTTAAAAAAAAAAAAC 260 * * * * * ** ** * * * * * ** ** consensus_11412#0 CCAAATGTCCAATCATAAAAAAATGTCTACACCGTAAAAAAAAAA 518 consensus_11412#2 CCAAATGTCCAATCATAAAAAAA---------------------- 446 consensus_11412#3 CCAAATGTCCAATCATAAAAA------------------------ 288 consensus_11412#1 AAA------------------------------------------ 449 consensus_11412#4 CNAAAAAAAAAAAAAAAAAAAAAAAAA------------------ 287 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||