| These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs : 
 consensusID : consensus_11415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence 
                              [GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
[+] EMBL AK108341             [GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTC ]
[+] EMBL CA998115             [                                                                                                                                                                                                                      ACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCT                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSC20261             [                                                                                                                                                                                                                                                                                                                                                                                   cgTCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGNGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGC                                                                                                                                                                                                      ]
[-] EMBL BI305492             [                                                                                                                                                                                                                                                                                                                                                                                             GAAAGACCCAATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTTTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTTTTTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
[-] EMBL CB966846             [                                                                                                                                                                                                                                                                                                                                                                                                      cATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA]
consensusID : consensus_11415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence 
                              [GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG-GCAGTAAAAATGTTATTCCAGTTTCAAACA-AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA-CTG-TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
[+] EMBL CA998929             [GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG GCAGTAAAAATGTTATTCCAGTTTCAAACA AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGT                                      ]
[+] EMBL BI804964             [                                                                                                                                                                                                                               CAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATGCCCAGTAAAAATGTTATTCCAGTTTCAAACACAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
[+] EMBL BI804871             [                                                                                                                                                                                                                                                                                                                    AGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGA CA CCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACCTGTTTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA]
consensusID : consensus_11415#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence 
                              [GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA]
[+] EMBL CA755678             [GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11415#0      GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGC 60
consensus_11415#1      ------------------------------------------------------------
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      AGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTAC 120
consensus_11415#1      ------------------------------------------------------------
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      TTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCC 180
consensus_11415#1      ------------------------------------------------------------
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      GGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGC 240
consensus_11415#1      ----------------------------------------------------GGCTCCGC 8
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 300
consensus_11415#1      GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 68
consensus_11415#2      GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGG- 59
                       ***  ** ****    * ***      *  *  * **  ** *  *    ** **  *  
consensus_11415#0      TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 360
consensus_11415#1      TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 128
consensus_11415#2      -AGGCCGAGGTGCGGGGCTACTTCGACAGCA-TGGCCCCCAGGCGCCCTTCCAAGCCGCC 117
                        * *  ***  **    ****  **    ** * **  * *   **    ***  *  * 
consensus_11415#0      GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 420
consensus_11415#1      GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 188
consensus_11415#2      GCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGC--CGACGC--CGACGCCG 173
                       *      *     **  *       **      *** *   *  * ***   * **    
consensus_11415#0      GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 480
consensus_11415#1      GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 248
consensus_11415#2      ACCTGCCGGAGTTTCGG-AGGCTCCGCGACCTC-GAGGCCAAACCCCAGAAAGTTGGGGC 231
                        *** *     *  * * *   *****  * *  *   **   *  ** *   ****   
consensus_11415#0      CCATCCTCAGAGACGGT----------------TATTCCAGTTTCAAACAAGCCTAGCAG 524
consensus_11415#1      CCATCCTCAGAGACGGTATGGCAGTAAAAATGTTATTCCAGTTTCAAACAAGCCTAGCAG 308
consensus_11415#2      TGGACGGTGGGGATGTGA-----------ACGGGAAGGAGTATGTGGAGACGCATAACAC 280
                           *    * ** *                   *       *    * * ** ** ** 
consensus_11415#0      GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 584
consensus_11415#1      GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 368
consensus_11415#2      AAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTA--------- 331
                        ** * **  *  *  *  *       **   *  ***  *     * **          
consensus_11415#0      CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 644
consensus_11415#1      CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 428
consensus_11415#2      CCCAGGGGAA-----AGCCC-CAGGGGAGCTCCTTCGACGTGTCCACCGT-TGCCGCTCA 384
                       *  * * ***     *** *  ** * ***  ****    * **    *    * *   *
consensus_11415#0      AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 703
consensus_11415#1      AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 487
consensus_11415#2      CTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCC--CC 442
                          *   * *       *** **** *  *  *        *    **  * * **  * 
consensus_11415#0      CTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCA 763
consensus_11415#1      CTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCCAAACTCA 547
consensus_11415#2      CAGCCCCCGAATGGCTGCAAAAGTGGTATCCG-ATCCTCACACATCTTA----------- 490
                       *     *    *   **  **  **   *  * * * ****   ** **           
consensus_11415#0      GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 823
consensus_11415#1      GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 607
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA------------ 871
consensus_11415#1      TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAA 667
consensus_11415#2      ------------------------------------------------------------
                                                                                   
consensus_11415#0      -------
consensus_11415#1      AAAAAAA 674
consensus_11415#2      -------
                              
 | 
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||