These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11415#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 871 fasta sequence [GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA] [+] EMBL AK108341 [GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTC ] [+] EMBL CA998115 [ ACCTGCCGGAGCTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCT ] [+] EMBL OSC20261 [ cgTCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGNGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGC ] [-] EMBL BI305492 [ GAAAGACCCAATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTTTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTTTTTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA] [-] EMBL CB966846 [ cATGATAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTGTCCGCTGCACGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTTATTCCAGTTTCAAACAAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA] consensusID : consensus_11415#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 674 fasta sequence [GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG-GCAGTAAAAATGTTATTCCAGTTTCAAACA-AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA-CTG-TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA] [+] EMBL CA998929 [GGCTCCGCGACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAGTATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACTGGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTTGCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATG GCAGTAAAAATGTTATTCCAGTTTCAAACA AGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCAAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGT ] [+] EMBL BI804964 [ CAACCCTGCAACAAATGATTGGATACCATCCTCAGAGACGGTATGCCCAGTAAAAATGTTATTCCAGTTTCAAACACAGCCTAGCAGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCA CTG TTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA] [+] EMBL BI804871 [ AGGAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCATCTGAAGAGAATAAAGAGCACATAGA CA CCACTTCTGTATATCGGAGGAACTCAGAGAAAGGTAGAGAAATGAAAGCGCTGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCTCTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACCTGTTTCATACTCCAAACTCAGTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTTTCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAAAAAAAAA] consensusID : consensus_11415#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence [GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA] [+] EMBL CA755678 [GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGGAGGCCGAGGTGCGGGGCTACTTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGCCGACGCCGACGCCGACCTGCCGGAGTTTCGGAGGCTCCGCGACCTCGAGGCCAAACCCCAGAAAGTTGGGGCTGGACGGTGGGGATGTGAACGGGAAGGAGTATGTGGAGACGCATAACACAAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTACCCAGGGGAAAGCCCCAGGGGAGCTCCTTCGACGTGTCCACCGTTGCCGCTCACTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCCCCCAGCCCCCGAATGGCTGCAAAAGTGGTATCCGATCCTCACACATCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11415#0 GCCCGCCAACCCAGTCTTGGACCGAGCTGAGCCGCCATGGCGACGACGCGGCCGGCGCGC 60 consensus_11415#1 ------------------------------------------------------------ consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 AGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGGTGGAGGCCGAGGTGCGGGGCTAC 120 consensus_11415#1 ------------------------------------------------------------ consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 TTCGACAGCATGGCCCCCAGGCGCCCTTCCAAGCCGCCGCGGAGCGACCCGTCGGACGCC 180 consensus_11415#1 ------------------------------------------------------------ consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 GGGGAGGGTGGGGCGGAGGCCGACGCCGACGCCGACCTGCCGGAGCTTCGGAGGCTCCGC 240 consensus_11415#1 ----------------------------------------------------GGCTCCGC 8 consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 300 consensus_11415#1 GACCTCGAGGCCAAACCCCAGAAGTTGGTGCTGGACGGTGGGGATGTGAACGGGGAGGAG 68 consensus_11415#2 GACGACGCGGCCGGCGCGCAGCGACCCGCACCTGCCGCCGGAGGAGGCGGCGCGGCTGG- 59 *** ** **** * *** * * * ** ** * * ** ** * consensus_11415#0 TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 360 consensus_11415#1 TATGTGGAGACGCAATACTACAACGGGCTCAATTGCATCGACAAGCAACACCACACGACT 128 consensus_11415#2 -AGGCCGAGGTGCGGGGCTACTTCGACAGCA-TGGCCCCCAGGCGCCCTTCCAAGCCGCC 117 * * *** ** **** ** ** * ** * * ** *** * * consensus_11415#0 GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 420 consensus_11415#1 GGTACAGGGTTTATCAAAGTGGAAAGACCCAATGGTAGCTCCTTCAACGTGACAACCGTT 188 consensus_11415#2 GCGGAGCGACCCGTCGGACGCCGGGGAGGGTGGGGTGGAGGC--CGACGC--CGACGCCG 173 * * ** * ** *** * * * *** * ** consensus_11415#0 GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 480 consensus_11415#1 GCCTACTCATCTGACAGCATTATCCGCTGCATGAGCAACCCTGCAACAAATGATTGGATA 248 consensus_11415#2 ACCTGCCGGAGTTTCGG-AGGCTCCGCGACCTC-GAGGCCAAACCCCAGAAAGTTGGGGC 231 *** * * * * * ***** * * * ** * ** * **** consensus_11415#0 CCATCCTCAGAGACGGT----------------TATTCCAGTTTCAAACAAGCCTAGCAG 524 consensus_11415#1 CCATCCTCAGAGACGGTATGGCAGTAAAAATGTTATTCCAGTTTCAAACAAGCCTAGCAG 308 consensus_11415#2 TGGACGGTGGGGATGTGA-----------ACGGGAAGGAGTATGTGGAGACGCATAACAC 280 * * ** * * * * * ** ** ** consensus_11415#0 GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 584 consensus_11415#1 GAGTGACTCCTGAGTCCTGACCGGGTTCCCTTCTGCTGTATGAATCTTTTTATAAATCAT 368 consensus_11415#2 AAGGGGCTAATCGGCTCGAAAGCAACACCACCCGACTGCGTCCGGGTCTTA--------- 331 ** * ** * * * * ** * *** * * ** consensus_11415#0 CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 644 consensus_11415#1 CTGAAGAGAATAAAGAGCACATAGAGCAGCCACTTCTGTATATCGGAGGAACTCAGAGAA 428 consensus_11415#2 CCCAGGGGAA-----AGCCC-CAGGGGAGCTCCTTCGACGTGTCCACCGT-TGCCGCTCA 384 * * * *** *** * ** * *** **** * ** * * * * consensus_11415#0 AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 703 consensus_11415#1 AGGTAGAGAAATGAAAGCGC-TGCAACTGCAAGGTTTATAAGGCATGAATCTGTCCTGCT 487 consensus_11415#2 CTCTGACGCATCACCGCCGCCTGCAGCCCCCCGCCCCCCCCGATCGGACGCCGCCC--CC 442 * * * *** **** * * * * ** * * ** * consensus_11415#0 CTTAATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCAAAACTCA 763 consensus_11415#1 CTTCATCGTGTTTTATGTGAACTTGTCGTATGCAACTTCACTGTTCATACTCCAAACTCA 547 consensus_11415#2 CAGCCCCCGAATGGCTGCAAAAGTGGTATCCG-ATCCTCACACATCTTA----------- 490 * * * ** ** ** * * * * **** ** ** consensus_11415#0 GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 823 consensus_11415#1 GTATCATGAATGATTGGTGTAACCGTGTAAGTGGATAGAGTACCAGTTCTGTCAGTTTTT 607 consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCA------------ 871 consensus_11415#1 TCTCTTTGCTGTAAGGATATTTTCCGTGTGTCTATGGAAAATGGGTCATTGCCAGATAAA 667 consensus_11415#2 ------------------------------------------------------------ consensus_11415#0 ------- consensus_11415#1 AAAAAAA 674 consensus_11415#2 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||