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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[TTTTTTTTTTTTTTGGTGAAATTGGTTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTAAAAAAAACGGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTAAATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAGGAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTGCAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGTCTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTGCTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCATGTGAGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACCACCAAACAGGAACTCCGTCAGCTCCTAGGGAGTACACTTCTCTCCATGCGTAAAGAGTACTTGCATCCAAAAGGAGAATCTCCGGTAGAAGTCAAAACTGGTACTGGCTGACATCCCGTTTCCCAGGGCGATATTCTACTCAACAGAGCTTTTCACTGATCCAATCGTTGTGAATTCTGACATATGCTCCGAGC]
[+] EMBL CA761560 [TTTTTTTTTTTTTTGGTGAAATTGGTTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTAAAAAAAACGGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTAAATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAGGAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTGCAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGTCTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTGCTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCATGTGAGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACCACCAAACAGGAACTCCGTCAGCTCCTAGGGAGTACACTTCTCTCCATGCGTAAAGAGTACTTGCATCCAAAAGGAGAATCTCCGGTAGAAGTCAAAACTGGTACTGGCTGACATCCCGTTTCCCAGGGCGATATTCTACTCAACAGAGCTTTTCACTGATCCAATCGTTGTGAATTCTGACATATGCTCCGAGC]
consensusID : consensus_1142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[ACAAAAATATATAAAGAGACAAGATAGAATCCTAAAGTCCTACTAGCAAACTAACCTGAATATATTGCATGTTAAAATTCAAATCACATTTATATTTAACAGTACGTTTGTTGAAATTGGTTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTACAAAAAAACTGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTAAATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAGGAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTGCAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGTCTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTGCTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCATGAGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACGACGAAACAGGA]
[-] EMBL CA754473 [ACAAAAATATATAAAGAGACAAGATAGAATCCTAAAGTCCTACTAGCAAACTAACCTGAATATATTGCATGTTAAAATTCAAATCACATTTATATTTAACAGTACGTTTGTTGAAATTGGTTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTACAAAAAAACTGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTAAATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAGGAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTGCAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGTCTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTGCTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCATGAGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACGACGAAACAGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1142#0 ------------------------------------------------------------
consensus_1142#1 ACAAAAATATATAAAGAGACAAGATAGAATCCTAAAGTCCTACTAGCAAACTAACCTGAA 60
consensus_1142#0 -----------------------------------TTTTTTTTTTTTTTGGTGAAATTGG 25
consensus_1142#1 TATATTGCATGTTAAAATTCAAATCACATTTATATTTAACAGTACGTTTGTTGAAATTGG 120
** * **** *********
consensus_1142#0 TTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTA- 84
consensus_1142#1 TTCAATTCTCGTTGAATTCCTTTGTTGCAACGGACCCAATTGAATTGGTGCACACGTTAC 180
***********************************************************
consensus_1142#0 AAAAAAACGGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTA 144
consensus_1142#1 AAAAAAACTGGCCTGAATTCTTGGAGGAACAGGGGAGAAAAGTTTCGACTGACCGACTTA 240
******** ***************************************************
consensus_1142#0 AATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAG 204
consensus_1142#1 AATTGTTCGTTCACTGGACGCATTAACTTTGAAGTGAATGTGCTAGCGAGTGACTGGCAG 300
************************************************************
consensus_1142#0 GAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTG 264
consensus_1142#1 GAGGATCGTCGATCGGACCAGGAGGACCGGACCGAGGGAGTTCTGACATCTTGGAAATTG 360
************************************************************
consensus_1142#0 CAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGT 324
consensus_1142#1 CAGTCTCGAGATGGTAACTCGATCAGTTCAGCAGCCTCATGGCTTGTAAAAATTCTTCGT 420
************************************************************
consensus_1142#0 CTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTG 384
consensus_1142#1 CTTCTCGTGTACTAGAAAAAAAAGATTGTTCCTTTTGAGACTTTGAAAATACAGTTGCTG 480
************************************************************
consensus_1142#0 CTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCAT 444
consensus_1142#1 CTGCTCATGTCATCTGGAGACTTGCAGCCTGTGGTAGGACGCTCCTGGAAATTGCAGCAT 540
************************************************************
consensus_1142#0 GTGAGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACCACCAAACAGGA 504
consensus_1142#1 G--AGTTGTGACCCAGTTTAGCGAAGCCGTCAACCTTTGCCTGATGACGACGAAACAGGA 598
* ********************************************* ** ********
consensus_1142#0 ACTCCGTCAGCTCCTAGGGAGTACACTTCTCTCCATGCGTAAAGAGTACTTGCATCCAAA 564
consensus_1142#1 ------------------------------------------------------------
consensus_1142#0 AGGAGAATCTCCGGTAGAAGTCAAAACTGGTACTGGCTGACATCCCGTTTCCCAGGGCGA 624
consensus_1142#1 ------------------------------------------------------------
consensus_1142#0 TATTCTACTCAACAGAGCTTTTCACTGATCCAATCGTTGTGAATTCTGACATATGCTCCG 684
consensus_1142#1 ------------------------------------------------------------
consensus_1142#0 AGC 687
consensus_1142#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||