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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11426#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 739 fasta sequence
[CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT-GTTGTGTTTTCAAAAAAAAAAAAAAAAAATGTCATGCCGTTACGTAGCGTATC]
[+] EMBL CF282096 [CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGA ]
[+] EMBL CF330591 [ CCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATTCTGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACTCTGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAGGACGACGTTCATGGTTGTGTTTTCAAAAAAAAAAAAAAAAAA ]
[-] EMBL CF282097 [ GCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTNTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAAAAAGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT GTTGTGTTTTCATGTAAAA ]
[-] EMBL CF330590 [ ATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTGTTATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT GTTGTGTTTTCAAAAAA ]
[-] EMBL CF281869 [ AACCAGTTGAATTACAGCAAAAATAAAGACGACGTTCAT G TGTGTTTTCAAAAAAAAAAAAAAACAATGTCATGCCGTTACGTAGCGTATC]
consensusID : consensus_11426#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence
[GACCCGCCTCAGTTTAGTTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAGTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTTCTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGTTTGTGTTATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCATTTGTGGTAAAAAAAAAAAAAAAAA]
[+] EMBL C98270 [GACCCGCCTCAGTTTAGTTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAGTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTTCTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGTTTGTGTTATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCATTTGTGGTAAAAAAAAAAAAAAAAA]
[-] EMBL AF521989 [ GGCATCCTACTTTGTGTGTAACATTTACCCTTTGAGACTGCTCAATTTATGCCTATTATTGTAAACTCCATTTTTGTGTGAATAATGAGAGGGACGATCGGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTATGACTCTGATGTTCACAAACGGACATATAGTATGTC ]
consensusID : consensus_11426#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[CATCACGGACACCAGCGGCGATCCATCGGCGATCCACCGCGCGCGCTTCGATCGGCGACCGCCTCAGTTAGTTAGTTAAGTTTCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCATTCAAGGATCATCCGTATGACCAGGACAGGTTCTGTTCTTTTTGGGTGAAGAACTGTTTTTTGTGATNGGTGGATAGATAGGGGTAAAATGTTTGTGTATGAAATGGGGATCNTNTTTGTGGTAAATTACCTTTGAATGTAATTATGCTNTATTGAATCATTTTGGGGATATGGGGNGNGGAGTGNTAAAATAAGAAGTGNTANGGGTCTTGGATGTTGGG]
[+] EMBL OS1365A [CATCACGGACACCAGCGGCGATCCATCGGCGATCCACCGCGCGCGCTTCGATCGGCGACCGCCTCAGTTAGTTAGTTAAGTTTCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAACAAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCAGCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTGCTATATTGGAGATCCATTCAAGGATCATCCGTATGACCAGGACAGGTTCTGTTCTTTTTGGGTGAAGAACTGTTTTTTGTGATNGGTGGATAGATAGGGGTAAAATGTTTGTGTATGAAATGGGGATCNTNTTTGTGGTAAATTACCTTTGAATGTAATTATGCTNTATTGAATCATTTTGGGGATATGGGGNGNGGAGTGNTAAAATAAGAAGTGNTANGGGTCTTGGATGTTGGG]
consensusID : consensus_11426#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence
[CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTG]
[+] EMBL CF281868 [CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCCGCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCACCTTGGTCGAGGTCGCCATGGCGGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGCTCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAACAAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCAGTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTGCTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTTCTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGGGTTATGTCCATGCAACATGGGAGAGCTACTCGGAGCATTTACCCTTTGAAATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11426#0 CACCACGACACCGTCTCGATCCCCCCCTCCTCTCCTCCTCTCGCCGGCGACCCCTCCGCC 60
consensus_11426#3 -----------------------CTGAAGGAGTAGAAATCTCGCCGGCGACCCCTCCGCC 37
consensus_11426#1 ------------------------------------------------------------
consensus_11426#2 -----------------------------------------CATCACGGACACCAGCGGC 19
consensus_11426#0 GCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCA 120
consensus_11426#3 GCTTCCTTCGCCGGAATCGATCGATCCCATCCTGCCCAAGCCGCCGCCGATTTCACCTCA 97
consensus_11426#1 -------------------------------------------GACCCG-CCTCAGTTTA 16
consensus_11426#2 GATCCATCGGC-------GATCCACCGCGCGCGCTTCGATCGGCGACCG-CCTCAGTT-A 70
*** *** * *
consensus_11426#0 CCTTGGTCGAGGTCG--CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGC 177
consensus_11426#3 CCTTGGTCGAGGTCG--CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCTGCGC 154
consensus_11426#1 G-TTAGTTAAAGTTTCCCCATGGCCGGGGAGCCCCAGCATCCCGACCAACAG-TCCGCTC 74
consensus_11426#2 G-TTAGTTAAGTTT---CCATGGC-GGGGAGGCCCAGCATCCCGACCAACAGCTCCGCTC 125
** ** * * ******* ****** ******************** ** ** *
consensus_11426#0 TCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTCGGCA 237
consensus_11426#3 TCATCGCCATCATCGCCGACGAGGACACGGTGACTGGGTTTTTGTTGGCTGGAGTTGGCA 214
consensus_11426#1 TCATCGCCATCATCGCCGACGAGGACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCA 134
consensus_11426#2 TCATCGCCATCATCGCCGACGAGGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCA 185
***************************** * *********************** ****
consensus_11426#0 ATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAAC 297
consensus_11426#3 ATGTTGATCTGAGGAAAAAGACAAATTATCTTATTGTTGATAACAAAACAACAGTCAAAC 274
consensus_11426#1 ATGTTNATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACANCAGTCAAAC 194
consensus_11426#2 ATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACAAAACAACAGTCAAAC 245
***** ********************** ********************* *********
consensus_11426#0 AAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCA 357
consensus_11426#3 AAATTGAAGATGCGTTTAAGGAGTTCACTACAAGGGAGGACATTGCAATTGTACTCATCA 334
consensus_11426#1 AAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCA 254
consensus_11426#2 AAATCGAAGATGCATTTAAGGAATTCACTACAAGGGAGGACATTGCAATTGTTCTCATCA 305
**** ******** ******** ***************************** *******
consensus_11426#0 GTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTG 417
consensus_11426#3 GTCAATATGTTGCAAACATGATTAGATTTCTTGTGGATAGCTACAACAGACCGGTTCCTG 394
consensus_11426#1 GCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTG 314
consensus_11426#2 GCCAATATGTTGCGAACATGATAAGGTTCCTGGTGGATAGCTACAACAGGCCCGTTCCTG 365
* *********** ******** ** ** ** ***************** ** *******
consensus_11426#0 CTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTT 477
consensus_11426#3 CTATATTGGAGATTCCATCGAAGGATCATCCTTATGACCCAGCACACGATTCTGTCCTTT 454
consensus_11426#1 CTATATTGGAGATCCCATCCAAGGATCATCCGTATGACCCAGCACACGATTCTGTTCTTT 374
consensus_11426#2 CTATATTGGAGATCC-ATTCAAGGATCATCCGTATGACC-AGGACA-GGTTCTGTTCTTT 422
************* * ** *********** ******* ** *** * ****** ****
consensus_11426#0 CTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGG 537
consensus_11426#3 CTCGCGTGAAGTACCTATTTTCCGCTGAATCAGTGGCGTCAGATAGGCGATGAGAACTGG 514
consensus_11426#1 CTCGCGTGAAGTACCTGTTTTCTGCTGAATCGGTGGCATCAGATAGGCGATAAAAACTGT 434
consensus_11426#2 TT-GGGTGAAGAAC-TGTTTTTTGT--GATNGGTGGA--TAGATAGG-GGTAAAA--TGT 473
* * ****** ** * **** * ** **** ******* * * * * **
consensus_11426#0 -TTATGTCCATGCAACATGGGAGAGCTACTCGGAG-----CATTTACCCTTTGAAATTGT 591
consensus_11426#3 GTTATGTCCATGCAACATGGGAGAGCTACTCGGAG-----CATTTACCCTTTGAAATTG- 568
consensus_11426#1 -TTGTGTT-ATGCAACATGGGCATCCTACTTTGTGTGTAACATTTACCCTTTGAAACTGC 492
consensus_11426#2 -TTGTGT----ATGAAATGGGGATCNTN-TTTGTG-GTAA-ATT--ACCTTTGAA----- 518
** *** * ***** * * * * *** ********
consensus_11426#0 TATTCATTTTGTGCCTATTGTAAACACTATTTTGTTTCAATAATGAGATGTCGACCAACC 651
consensus_11426#3 ------------------------------------------------------------
consensus_11426#1 TCAATTTATGCCTATTATTGTAAACTCCATTTTTGT--GTGAATAATGAGAGGGACGATC 550
consensus_11426#2 TGTAATTATGCT--NTATTGAA----TCATTTTGG---GGATATGGGGNGNGGAGTGNTA 569
consensus_11426#0 AGTTGAATTACAGCAAAAATAAAGACGACGTTCATGTTGTGTTTTCAAAAAAAAAAAAAA 711
consensus_11426#3 ------------------------------------------------------------
consensus_11426#1 GGGCAGATGAACTACAACAAAATAAAGACACGATGAATTCATGTAGCTCCTTTTGTGTAT 610
consensus_11426#2 AAATAA--GAAGTGNTANGGGTCTTGGATGTTGGG------------------------- 602
consensus_11426#0 AAAATGTCATGCCGTTACGTAGCGTATC-------------------------------- 739
consensus_11426#3 ------------------------------------------------------------
consensus_11426#1 GACTCTGGTGTTCACAAACGGACATATTGTATGTCGATGTTGATAAACGATGATTTTCAT 670
consensus_11426#2 ------------------------------------------------------------
consensus_11426#0 ------------------------
consensus_11426#3 ------------------------
consensus_11426#1 TTGTGGTAAAAAAAAAAAAAAAAA 694
consensus_11426#2 ------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||