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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 959 fasta sequence
[ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT-TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT--GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT-TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA-AGTTGTATCAGCAGCTGCTAGTC-AGCAATTTTTCTCTTTGTGTTCTTGT-AGCTGCAGCTCCTCTATGATT-AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC-TGTC-AAAACACGCTGTATGTTGTACAAG-AGA-AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC-TGGTAAAAGTTTCATGTGCTCG-CATCTGATATTTTG-GA-GGAATGATTACTTTATTNGTGTTCCNNNNANATNANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTATAAGAGTGG]
[+] EMBL BE040099 [ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTCTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAAATTTTCTCTTTGGGTTCTTGT AGCTGCAGCTTCTCTATGATTAAGAATACT CTTGTTCATGGAAGCAACAAGCAACCCCAAACTTGTC AAACACGCTGTATGTTGTACAAGAAGA AAAACATTG ACATTTTCTAACCCATTTTCACCTTCT CTTGTGCTG ATGTAACAATCAATGCCTG AACTTGGT AAAG TTCATGGGCTCG CATCTGATATTTTG GA TGAATGATTACTTTATTNGTGTTCCNNNNANATNANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTATAAGAGTGG]
[+] EMBL CB097127 [ AGGACATTAAAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCGTCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTTTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGCAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGGGCTGNATGTAACATTCAATGCCTGT ]
[-] EMBL CB676531 [ ACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAGATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAAAGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCG t ]
[-] EMBL CB651347 [ CAAGGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCCTTGTCCATGATATGT TCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTT GATCTGTAGTGTAGTTCTAACAAACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAAC TGTC AAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGAGAGGGAATGAatt ]
[+] EMBL BM421892 [ gCCATGATATGTNTCCCTCCAACCACTCTT TTGAGCAGGAAGACTACAATTCCTGGAATTACTGGAAGATGCCATTGCCAGATGTTGNGATCTGTAGTGTAGTTCTAAC AACACAGAAGTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAACGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGT TTCCATATTTATGGTTTTGATCTCCAACGCAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCACAGTTGTATCAGCAGCTGCTAGTC AGCAATTTTTCTCTTTGTGTTCTTGT AGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAACCC AAAC TGTC AAAACACGCTGTATGTTGTACAAG AGACCNAACTTTGTACATTTCCTACCCCA ]
[+] EMBL BI810777 [ atGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGTGTTCCATATTTATGGTTTGGATCTCCAACGCAAAGGTT CCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCA AGTTGTATCAGCAGCTGCTAGTCAAGCAATTTTTCTCTTTGTGTTCTTGTGAGCTGCAGCTCCTCTATGATT AGATTACTCCTGGTTCATGGAAGCAACAGGCAAACCCAAAC TGTCAAAAACACGCTGTATGTTGTACAAG AGA AAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAAC TGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTG GAaaaaa ]
consensusID : consensus_11427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence
[CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATACATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTTGCACCTTCTCCTTGGTGCTGTANGTAACATTCAA-NCCTGTAACGGGTAAAAGTTTCATGTGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA]
[+] EMBL BQ909189 [CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATACATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTTGCACCTTCTCCTTGGTGCTGTANGTAACATTCAA NCCTGTAACGGGTAAAAGTTTCATGTGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA]
[+] EMBL BQ909011 [CCGACG CAAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCC AAACT GTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT ACCCCATT TT CACCTTCTCCTT GTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCT GATATTTTGGATGGAATGAATTACTCTATAGCTGATCAAAAA]
consensusID : consensus_11427#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 372 fasta sequence
[GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGGATGGAAAAAAAAAAAAA]
[-] EMBL CF279634 [GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATACATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGCTTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTGCAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGTCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCTACCCCATTTTCACCTTCTCCTTGTGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATGTGCTCGTCATCTGATATTTTGGATGGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11427#0 ACCGGGAAGTTATACGAAGAGCACCACATGAGTTTAAGATTGCATGTCTGGAGGACATTA 60
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 AAGCACTTTTCCCTTCTGATTACAATCCATTTTATGCTGGATTTGGCAACAGAGATACAG 120
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 ATGAGCTTAGTTACAAAAAGATGGGAATTCCAAAAGGGAAAATCTTTATCATCAACCCAA 180
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 AGGGGGAAGTAGCCATAAACAGTTCTGTCGACGTGAAGTCCTATACCTCCTTACATACCC 240
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 TTGTCCATGATATGTTCCCTCCAACCACTCTTGTTGAGCAGGAAGACTACAATTCCTGGA 300
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 ATTACTGGAAGATGCCATTGCCAGATGTTGATCTGTAGTGTAGTTCTAACAAACACAGAA 360
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 GTAGATAACACTAGATTCTGCATCAGCATAACAGTCAAGTCCGTGTACACTAATTCTCAA 420
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 CGCTATGGTGGGGTTCTGTCCAATCTGTAAAGCATCTCAGGAGTTTCCATATTTATGGTT 480
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 TTGATCTCCAACGC-AAAGGTTGCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATA 539
consensus_11427#2 ----------------------GCCATTTTATTTGCTTTGACGAAGCTCTCATGATCATA 38
consensus_11427#1 -------CCGACGCCAAAGGTTNCCATTTTATTTGCTTTGACGAAGCTCTCANGATCATA 53
***************************** *******
consensus_11427#0 CATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGC 599
consensus_11427#2 CATCTTTTAGGGAGTGATCTGTGATACTCTTCGTCGAACTTACGGCCTTAGCTTGTCAGC 98
consensus_11427#1 CATCTTTTAGGGAGTGATCTGNGATACTCTTCGTCGAACTTACGCCCTTAGCTNGTCAGC 113
********************* ********************** ******** ******
consensus_11427#0 TTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTG 659
consensus_11427#2 TTTCCAAGTTGTATCAGCAGCTGCTAGTCAGCAATTTTTCTCTTTGTGTTCTTGTAGCTG 158
consensus_11427#1 TTTCCAAGTTGTATCAGCAGCTGCTAGTCANCAATTTTTCTCTTNGTGTTCTTGTAGCTG 173
****************************** ************* ***************
consensus_11427#0 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTG- 718
consensus_11427#2 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTG- 217
consensus_11427#1 CAGCTCCTCTATGATTAGATTACTCCTGGTTCATGGAAGCAACAGGCAACCCAAAACTGG 233
***********************************************************
consensus_11427#0 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT-ACCCCATTTT- 776
consensus_11427#2 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACATTGTACATTTCCT-ACCCCATTTT- 275
consensus_11427#1 TCAAAACACGCTGTATGTTGTACAAGAGAAAAACTGTGTACATTTCCTGACCCCATTGTT 293
********************************** ************ ******** *
consensus_11427#0 -CACCTTCTCCTTG-TGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATG 834
consensus_11427#2 -CACCTTCTCCTTG-TGCTGTATGTAACATTCAATGCCTGTAACTGGTAAAAGTTTCATG 333
consensus_11427#1 GCACCTTCTCCTTGGTGCTGTANGTAACATTCAAN-CCTGTAACGGGTAAAAGTTTCATG 352
************* ******* *********** ******** ***************
consensus_11427#0 TGCTCG-CATCTG-ATATTTTGGA-GGAATGA-TTACTTTATTNGTGTTCCNNNNANATN 890
consensus_11427#2 TGCTCGTCATCTG-ATATTTTGGA-TGGAAAA-AAAAAAAAA------------------ 372
consensus_11427#1 TGCTCGTCATCTGGATATTTTGGACGGAATGAATTACTCTATAGCTGATCAAAAA----- 407
****** ****** ********** * * * * *
consensus_11427#0 ANTTNNCTNTTTNNNTTNNNNNNTTTTACTTAAGGGGGGGGCCGGAACCAAATTGCCCTA 950
consensus_11427#2 ------------------------------------------------------------
consensus_11427#1 ------------------------------------------------------------
consensus_11427#0 TAAGAGTGG 959
consensus_11427#2 ---------
consensus_11427#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||