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Oryza sativa
cluster # 11428 cluster # 11428       Sequences # 9       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11428#0 length = 1515 sequences # 3  
consensus_11428#1 length = 717 sequences # 4  
consensus_11428#2 length = 602 sequences # 1  
consensus_11428#3 length = 334 sequences # 1  

consensusID : consensus_11428#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1515
fasta sequence
                              [AATGCGGCCCATGACGAGCCCACCTCTCCTCTCGCCCTCCTCCTCCTCCTCCCGTCTCCTCCTCCTCCGCCTCCTCCTCTCCCGCCGCCGGAGCCCCGCCTCGCGCTCCCCTCCTCCTCCCCTCCGCCGCCGCCTCCCTCTCCTCGCTGCCTCCATGTCCTCCTCCTCCTCCACCGCCGCCACCAGAAACCCCGGCTCCGTCGTCGCCGACGCCGACGGCCTCGCCCGCAAGGTCGCCGCCATCCGCGCCGCCGGCCCCGCTAAGCTCCAGGTCATCGCGGACTTCGACGGCACGCTCACGCGGTACTGGTACGACGGCTCCCGCGGCCAGAGCAGCCATGGGTTGCTGAGGCAGGGGAACGAGGAGTACGACGCCAAGAGGGAGGAGCTGTTCGAGCACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGGGAGAAGACACATGCTCTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGCTAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATATTCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAAACTCCACAGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCATGACAATTTG-GGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTATTCCCCACTTCACTAACCGGCTGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTGTGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAGAAATTTCTCCCTATCACTTTTGACTTTTCGACCCACCATGATCTTGTTTCTCGTTAATTAAGTAAATCTTGTGGGTAAATCAAATGTAAGGTACGTAAGGTGATGAACTGAACCCATCAACTTCCTGACCTTACTGGACGGTAACGAGAAATCTTTATGCCAATAAAGGCATACAGTATCAACTAGGTGTGGCTATATATTATAG]

[+] EMBL AK100007             [AATGCGGCCCATGACGAGCCCACCTCTCCTCTCGCCCTCCTCCTCCTCCTCCCGTCTCCTCCTCCTCCGCCTCCTCCTCTCCCGCCGCCGGAGCCCCGCCTCGCGCTCCCCTCCTCCTCCCCTCCGCCGCCGCCTCCCTCTCCTCGCTGCCTCCATGTCCTCCTCCTCCTCCACCGCCGCCACCAGAAACCCCGGCTCCGTCGTCGCCGACGCCGACGGCCTCGCCCGCAAGGTCGCCGCCATCCGCGCCGCCGGCCCCGCTAAGCTCCAGGTCATCGCGGACTTCGACGGCACGCTCACGCGGTACTGGTACGACGGCTCCCGCGGCCAGAGCAGCCATGGGTTGCTGAGGCAGGGGAACGAGGAGTACGACGCCAAGAGGGAGGAGCTGTTCGAGCACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGGGAGAAGACACATGCTCTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGCTAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATATTCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAAACTCCACAGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCATGACAATTTG GGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTATTCCCCACTTCACTAACCGGCTGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTGTGAAATGGAATTTCAAATTTGGT                                                                                                                                                                                                                         ]
[+] EMBL AK060491             [                                         CCTCCTCCTCCCGTCTCCTCCTCCTCCGCCTCCTCCTCTCCCGCCGCCGGAGCCCCGCCTCGCGCTCCCCTCCTCCTCCCCTCCGCCGCCGCCTCCCTCTCCTCGCTGCCTCCATGTCCTCCTCCTCCTCCACCGCCGCCACCAGAAACCCCGGCTCCGTCGTCGCCGACGCCGACGGCCTCGCCCGCAAGGTCGCCGCCATCCGCGCCGCCGGCCCCGCTAAGCTCCAGGTCATCGCGGACTTCGACGGCACGCTCACGCGGTACTGGTACGACGGCTCCCGCGGCCAGAGCAGCCATGGGTTGCTGAGGCAGGGGAACGAGGAGTACGACGCCAAGAGGGAGGAGCTGTTCGAGCACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGGGAGAAGACACATGCTCTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGCTAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATATTCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAAACTCCACAGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCATGACAATTTG GGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAGGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGAAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTATTCCCCACTTCACTAACCGGCTGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTGTGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAGAAATTTCTCCCTATCACTTTTGACTTTTCGACCCACCATGATCTTGTTTCTCGTTAATTAAGTAAATCTTGTGGGTAAATCAAATGTAAGGTACGTAAGGTGATGAACTGAACCCATCAACTTCCTGACCTTACTGGACGGTAACGAGAAATCTTTATGCCAATAAAGGCATACAGTATCAACTAGGTGTGGCTATATATTATAG]
[+] EMBL CF313428             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    CTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGCTAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATATTCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAAACTCCACAGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCATGACAATTTGNGGTGATCCAAATGGATATACCGATGACTATTCGTTGGTGAAGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATG AAACAGGATTGCTGTTGGATTTCTGAAC ACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_11428#0 AATGCGGCCCATGACGAGCCCACCTCTCCTCTCGCCCTCCTCCTCCTCCTCCCGTCTCCT CCTCCTCCGCCTCCTCCTCTCCCGCCGCCGGAGCCCCGCCTCGCGCTCCCCTCCTCCTCC CCTCCGCCGCCGCCTCCCTCTCCTCGCTGCCTCCATGTCCTCCTCCTCCTCCACCGCCGC CACCAGAAACCCCGGCTCCGTCGTCGCCGACGCCGACGGCCTCGCCCGCAAGGTCGCCGC CATCCGCGCCGCCGGCCCCGCTAAGCTCCAGGTCATCGCGGACTTCGACGGCACGCTCAC GCGGTACTGGTACGACGGCTCCCGCGGCCAGAGCAGCCATGGGTTGCTGAGGCAGGGGAA CGAGGAGTACGACGCCAAGAGGGAGGAGCTGTTCGAGCACTACCACCCCATCGAGATCTG CCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGGGAGAAGACACA TGCTCTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGC TAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATAT TCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAA ACTCCACAGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAGA AGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGC CTTGGACATGGCAGCTCCAGTGCATGACAATTTGGGTGATCCAAATGGATATACTGATGA CTATTCGTTGGTGAAGAAGAGGACCAATGTGCTTCTCCTTGGAGATCACATTGGCGACCT TGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAA CATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGC GCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTT GCTGAGCTTAGAAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTATTCCC CACTTCACTAACCGGCTGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCA AGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAG TCCAGAACACATTTGTGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAGAAATTTCTCC CTATCACTTTTGACTTTTCGACCCACCATGATCTTGTTTCTCGTTAATTAAGTAAATCTT GTGGGTAAATCAAATGTAAGGTACGTAAGGTGATGAACTGAACCCATCAACTTCCTGACC TTACTGGACGGTAACGAGAAATCTTTATGCCAATAAAGGCATACAGTATCAACTAGGTGT GGCTATATATTATAG



consensusID : consensus_11428#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 717
fasta sequence
                              [AATGNAGGAGGTCTTCCGGCAGAAACTCCACANGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGGAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCACGACAATTTGGGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACC-AATGTGCTTCT-CCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGCAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTTTTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAGT-CCAGAACACATTTATGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA762180             [AATGNAGGAGGTCTTCCGGCAGAAACTCCACANGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGGAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTCATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCACGACAATTTGGGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACC AATGTGCTTCT CCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGCAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTTTTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCTTAAGCCAATCCAAACTTGTATGAAGT CCAGAACACATTTATGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI802892             [                                                                                                                                                CCTTGGACATGGCAGCTCCAGTGCATGACAATTTGGGTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACC AATGTGCTTCT CCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCC ATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACC AATGATGTTTTGCTGAGCTTAGCAGCCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTTTTCCCCACTTCCCTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACC ATATCTCCTTAAGCC ATCC AACTTGTATGAAGT CCAGAACACATTTATGAAATGGAACTTCCAATTTGGTTTTGGTCCTCAAAAAAAAA                                   ]
[+] EMBL BI804155             [                                                                                                                                                                                      GATCCAAATGGATATACTGATGACTATTC TTGTTGAAGAAGAGGACCAAATGTGCTTCTCCCTTGGAGATCACATT GCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGATTGCTGTTGGATTTCTGAAC ACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGA TTGTTGAGCTTGTATCTGAACTATGTCCTTAACC AATGATGTTTTGCTGAGCTTA CA CCGCATCCGCCTCCCGCTCTTGCTGAAATCTGGGAATCCTTTTCCCCACTTCACTAACC GCCGGGTTTGTTCAATAAGAACCAATTTTGTACAGGCTTGACATCAACCAACCCAACCACCCTTTTGAACCAATATCTCCTTAA CCCATCCAAACTTGTATGAAGTCCCAGAACACATTTATGAAATGGAATTTCAAATTT GTTTTGGTCCTCAAAAAAAA                                    ]
[-] EMBL CF313429             [                                                                                                                                                                                                                                                                                                   TGAAAACAGGATTGCTGTTGGATTTTTGAACAACAACATCGAGAAATTTTTAAAAGATTACTCCGAGGCATTTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATTTGAACTATGTCCTTAACCAAATGATGTTTTGTTGAGCTTAGAAGCGGCATCCGCCTCCCGTTTTTGTTGAAATTTGGGAATCCTATTCCCCACTTCACTAACCGGTTGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATTTCCTTAAGCCAATCCAAACTTGTATGAAGT CCAGAACACATTTGTGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAAAAAAAAAAAAAAAAAAAAAAAA                    ]


>consensus_11428#1 AATGNAGGAGGTCTTCCGGCAGAAACTCCACANGATCATTCAAGAACATTAAGGTTGTGT CCAACAGGATGGTCTTCAATGGAGAAGGTCGTCTTGTTTCATTTAAAGGAAAGACTATTC ATGTTCTAAACAAAAATGAGCATGCCTTGGACATGGCAGCTCCAGTGCACGACAATTTGG GTGATCCAAATGGATATACTGATGACTATTCGTTGGTGAAGAAGAGGACCAATGTGCTTC TCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAAACAGGA TTGCTGTTGGATTTCTGAACAACAACATCGAGAAATCTCTAAAAGATTACTCCGAGGCAT TTGATATTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAAC TATGTCCTTAACCAAATGATGTTTTGCTGAGCTTAGCAGCCGCATCCGCCTCCCGCTCTT GCTGAAATCTGGGAATCCTTTTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAA GCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCCT TAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATTT GGTTTTGGTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11428#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence
                              [TGAGGGGAGGGATTTGTGCGTGTGTGGAGCGCAAGGGTGCGCACTCCCTTTGACAGGCAGCTCCGGGCATGACAATGTTGGGGTGATCCACAAGTGATATAGCGGAGTGACTATTCGGTTGGGTGAAGGAAGAGGACCAATGGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAGAACAGGATTGCCTTTGGATTTCTGAGACGACAACATCGAGAAATCTCTAAAAGAGTTACTCCGAGGCATTTGATAGTGTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCGAATGATGTTGTTGCTGAGCGTTAGGCAGGCCGCATCCGCCTGCCCGCTCTTGCTGAAATGCGTGGGAATCCTGTGTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTGTTTGAACCATATCTCCTTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAAAAAAAAA]

[+] EMBL BI804152             [TGAGGGGAGGGATTTGTGCGTGTGTGGAGCGCAAGGGTGCGCACTCCCTTTGACAGGCAGCTCCGGGCATGACAATGTTGGGGTGATCCACAAGTGATATAGCGGAGTGACTATTCGGTTGGGTGAAGGAAGAGGACCAATGGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAGAACAGGATTGCCTTTGGATTTCTGAGACGACAACATCGAGAAATCTCTAAAAGAGTTACTCCGAGGCATTTGATAGTGTGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCGAATGATGTTGTTGCTGAGCGTTAGGCAGGCCGCATCCGCCTGCCCGCTCTTGCTGAAATGCGTGGGAATCCTGTGTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTGTTTGAACCATATCTCCTTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAAAAAAAAA]


>consensus_11428#2 TGAGGGGAGGGATTTGTGCGTGTGTGGAGCGCAAGGGTGCGCACTCCCTTTGACAGGCAG CTCCGGGCATGACAATGTTGGGGTGATCCACAAGTGATATAGCGGAGTGACTATTCGGTT GGGTGAAGGAAGAGGACCAATGGCTTCTCCTTGGAGATCACATTGGCGACCTTGGAATGT CTGATGGTCTAAACTATGAAGAACAGGATTGCCTTTGGATTTCTGAGACGACAACATCGA GAAATCTCTAAAAGAGTTACTCCGAGGCATTTGATAGTGTGTCTACTTGAATGACGCGCC AATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCCTTAACCGAATGATGTTGTTGC TGAGCGTTAGGCAGGCCGCATCCGCCTGCCCGCTCTTGCTGAAATGCGTGGGAATCCTGT GTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGAAGCAATTTTGTACAGGCTTGA CATCAAGCAAGCCAAGCAGCCTGTTTGAACCATATCTCCTTAAGCCAATCCAAACTTGTA TGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATTTGGTTTTGGTCCTCAAAAAAA AA



consensusID : consensus_11428#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 334
fasta sequence
                              [ACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGAGGAAGTAGTTTAGTGAGTAGTGCTGCAAATTTCCACCCTATTATCCTTTGGTACACCGATCAGGTGGATTCTGTTGTGGTCAAGTTCTCAAGTCCCAGTTGGACATATTTGGGAATTTAGCATTTAAGTGATGACGAAGTGAGAGTGGTGCTGCATACAACATTTGATTTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF319663             [ACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGAGGAAGTAGTTTAGTGAGTAGTGCTGCAAATTTCCACCCTATTATCCTTTGGTACACCGATCAGGTGGATTCTGTTGTGGTCAAGTTCTCAAGTCCCAGTTGGACATATTTGGGAATTTAGCATTTAAGTGATGACGAAGTGAGAGTGGTGCTGCATACAACATTTGATTTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11428#3 ACTACCACCCCATCGAGATCTGCCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGG AAGAATGGTGAGGAAGTAGTTTAGTGAGTAGTGCTGCAAATTTCCACCCTATTATCCTTT GGTACACCGATCAGGTGGATTCTGTTGTGGTCAAGTTCTCAAGTCCCAGTTGGACATATT TGGGAATTTAGCATTTAAGTGATGACGAAGTGAGAGTGGTGCTGCATACAACATTTGATT TTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      AATGCGGCCCATGACGAGCCCACCTCTCCTCTCGCCCTCCTCCTCCTCCTCCCGTCTCCT 60
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CCTCCTCCGCCTCCTCCTCTCCCGCCGCCGGAGCCCCGCCTCGCGCTCCCCTCCTCCTCC 120
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CCTCCGCCGCCGCCTCCCTCTCCTCGCTGCCTCCATGTCCTCCTCCTCCTCCACCGCCGC 180
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CACCAGAAACCCCGGCTCCGTCGTCGCCGACGCCGACGGCCTCGCCCGCAAGGTCGCCGC 240
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CATCCGCGCCGCCGGCCCCGCTAAGCTCCAGGTCATCGCGGACTTCGACGGCACGCTCAC 300
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      GCGGTACTGGTACGACGGCTCCCGCGGCCAGAGCAGCCATGGGTTGCTGAGGCAGGGGAA 360
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CGAGGAGTACGACGCCAAGAGGGAGGAGCTGTTCGAGCACTACCACCCCATCGAGATCTG 420
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      CCCCGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTGGGAGAAGACACA 480
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      TGCTCTCCTTATCGAAGGTGGACTTACATATGAAGCTATAAGGCAATCTGTGGCTGATGC 540
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      TAAAATCACTTTTAGAGATGGAGTGGTGAAGCTCTTTGAGTTCTTGGAGGAGAGAGATAT 600
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------AATGNAGGAGGTCTTCCGGCAGAA 24
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      TCCAGTATTAGTATTTTCTGCTGGACTTGCAGACATAATTGAGGAGGTCTTCCGGCAGAA 660
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ACTCCACANGATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGGAG 84
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      ACTCCACAG-ATCATTCAAGAACATTAAGGTTGTGTCCAACAGGATGGTCTTCAATGAAG 719
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      AAGGTCGTCTTGTTTCATTTAAAGGAAAGACT-ATTCATGTTCTAAAC--AAAAATGAGC 141
consensus_11428#2      ------------------TGAGGGGAGGGATTTGTGCGTGTGTGGAGCGCAAGGGTGCGC 42
consensus_11428#0      AAGGTCGTCTTGTTTCATTTAAAGGAAAGACT-ATTCATGTTCTAAAC--AAAAATGAGC 776
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      A-TGCCTTGGACATGGCAGCTCCAGTGCACGACAATTT--GGGTGATCCAAATG-GATAT 197
consensus_11428#2      ACTCCCTTTGACA-GGCAGCTCCGG-GCATGACAATGTTGGGGTGATCCACAAGTGATAT 100
consensus_11428#0      A-TGCCTTGGACATGGCAGCTCCAGTGCATGACAATTT--GGGTGATCCAAATG-GATAT 832
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ACTGA--TGACTATTCGTT--GGTGAAG-AAGAGGACCAATGTGCTTCTCCTTGGAGATC 252
consensus_11428#2      AGCGGAGTGACTATTCGGTTGGGTGAAGGAAGAGGACCAATG-GCTTCTCCTTGGAGATC 159
consensus_11428#0      ACTGA--TGACTATTCGTT--GGTGAAG-AAGAGGACCAATGTGCTTCTCCTTGGAGATC 887
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAA-AACAGGATTGCTGTTGGA 311
consensus_11428#2      ACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAAGAACAGGATTGCCTTTGGA 219
consensus_11428#0      ACATTGGCGACCTTGGAATGTCTGATGGTCTAAACTATGAA-AACAGGATTGCTGTTGGA 946
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      TTTCTGA-ACAACAACATCGAGAAATCTCTAAAAGA-TTACTCCGAGGCATTTGATATTG 369
consensus_11428#2      TTTCTGAGACGACAACATCGAGAAATCTCTAAAAGAGTTACTCCGAGGCATTTGATAGTG 279
consensus_11428#0      TTTCTGA-ACAACAACATCGAGAAATCTCTAAAAGA-TTACTCCGAGGCATTTGATATTG 1004
consensus_11428#3      ---------------------------------------ACTACCACCCCATCGAGAT-- 19
                                                              *** * *  *  * ** *   

consensus_11428#1      T--CTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCC 427
consensus_11428#2      TGTCTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCC 339
consensus_11428#0      T--CTACTTGAATGACGCGCCAATGGTGGGAGTTGTTGAGCTTGTATCTGAACTATGTCC 1062
consensus_11428#3      ---CTGCCC---CGACATCCCGCTCCCCGAGAAGGCCAAGCTCATGGAAGAATGGTG--- 70
                          ** *      ***   **  *    *     *   ****  *    ***   **   

consensus_11428#1      TTAACCAAATGATGTT-TTGCTGAGCTT--AGCAG-CCGCATCCGCCT-CCCGCTCTTGC 482
consensus_11428#2      TTAACCGAATGATGTTGTTGCTGAGCGTTAGGCAGGCCGCATCCGCCTGCCCGCTCTTGC 399
consensus_11428#0      TTAACCAAATGATGTT-TTGCTGAGCTT--AGAAG-CCGCATCCGCCT-CCCGCTCTTGC 1117
consensus_11428#3      ---AGGAAGTAGTTTAGTGAGTAGTGCT--GCAAATTTCCACCCTATTATCCTTTGGTAC 125
                          *   * *  * *  *   *     *     *     ** **   *  **  *  * *

consensus_11428#1      TGAAATC--TGGGAATCCTTT-TCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGA 539
consensus_11428#2      TGAAATGCGTGGGAATCCTGTGTCCCCACTTCACTAACCGGCCGGGTTTGTTCAATAAGA 459
consensus_11428#0      TGAAATC--TGGGAATCCTAT-TCCCCACTTCACTAACCGGCTGGGTTTGTTCAATAAGA 1174
consensus_11428#3      ACCGATCAGGTGGATTCTGTTGTGGTCAAGTTCTCAA--GTCCCAGTTGGAC--ATATTT 181
                           **     *** **   * *   **  *    **  * *   *** *    ***   

consensus_11428#1      AGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCC 599
consensus_11428#2      AGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTGTTTGAACCATATCTCC 519
consensus_11428#0      AGCAATTTTGTACAGGCTTGACATCAAGCAAGCCAAGCAGCCTTTTGAACCAATATCTCC 1234
consensus_11428#3      GGGAATTTAGCATTTAAGTGATGACGA---AGTGAGAGTGGTGCTGCATACAACATTTGA 238
                        * ***** * *      ***   * *   **  *    *    *     * * ** *  

consensus_11428#1      TTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATT 659
consensus_11428#2      TTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTATGAAATGGAATTTCAAATT 579
consensus_11428#0      TTAAGCCAATCCAAACTTGTATGAAGTCCAGAACACATTTGTGAAATGGAATTTCAAATT 1294
consensus_11428#3      TTTTGATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 298
                       **  *   *   ***     *  **    * ** * *      ***   **    ***  

consensus_11428#1      TGGTTTTGGTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-- 717
consensus_11428#2      TGGTTTTGGTCCTCAAAAAAAAA------------------------------------- 602
consensus_11428#0      TGGTTTTGGTCCTCAGAAATTTCTCCCTATCACTTTTGACTTTTCGACCCACCATGATCT 1354
consensus_11428#3      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 334
                                     * ***                                         

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      TGTTTCTCGTTAATTAAGTAAATCTTGTGGGTAAATCAAATGTAAGGTACGTAAGGTGAT 1414
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      ------------------------------------------------------------
consensus_11428#2      ------------------------------------------------------------
consensus_11428#0      GAACTGAACCCATCAACTTCCTGACCTTACTGGACGGTAACGAGAAATCTTTATGCCAAT 1474
consensus_11428#3      ------------------------------------------------------------
                                                                                   

consensus_11428#1      -----------------------------------------
consensus_11428#2      -----------------------------------------
consensus_11428#0      AAAGGCATACAGTATCAACTAGGTGTGGCTATATATTATAG 1515
consensus_11428#3      -----------------------------------------
                                                                




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)