cluster # 11441

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Oryza sativa
cluster # 11441 cluster # 11441 Sequences # 9 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11441#0 length = 2738 sequences # 8

consensus_11441#1 length = 216 sequences # 1

consensusID : consensus_11441#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 2738
fasta sequence

                              [TAGCGCTCTCTCTCTCTCTCCCCCCACCCTCCCTTCGCCTATAGCTGAGGCGGCGGCTCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACGAAGGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCGCCAAGGAGCAGGGGTACCGGAGCCGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGTTCCGCTTCCTGCCGACGGCGCGCGCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCAACCACGCGCCCGTGGGGGCCTTCGTCGTCGGCGTCGACCTCGTCCCCATCCGCCCCATCCGCGGCGCGCACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCGCCGTGCGGAGGCTCATGGACTCCAACGGCGTCGCCGCGTTCGACGTCGTGCTCCACGACGGGTCCCCCAACGTCGGTGGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTCGCCACCATGTTCCTCGCCCCCAAGGGTGCCTTCATC-ACTAAGGTTTTCAGGTCTCAGGATTACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGTTGAAGTCACTAAACCTACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCTGCAAAGATTCAGCCAGAACTTTTGGATATAAAGCATTTGTTCAGTGTGGATCCAGATCCTAAAAAGGTTAGGGATCCTCTCAAGCCGGACAGACAGAAGAGGAACCGTGATGGATACGAAGAAGGAAATACAACATTGCGAAAAGTTGGTCTGGCTTCAGATTTTATATGGTCTGAGGGCCAAACGCCCCTAGAGTTTCTTGGTTCTTTTAATGCAATTTCATTTGATGACCCAGCATCTCTTCCTATCAAGAACCATGAGCTTACTACAGATGAGATAAAAGCTCTTTGTAAGGATTTGTATGTACTGGACAAAAACAGCTTCAAGCATATCTTGAAATGGCGGATACGCATACGGAAAGCACTATCATCTTCTGAAGTCACTAAAAAAACTGATGATACTGCGGTGGAAGTCAATGTCAAGGATGATGACCAACTTCTACAGGAAATGGAAGAATTGACGAGTGTCATTGATAGAAAGAAGAAGAGAGAAAAGAAGCGTCAATCAAAGCGCCGTGCAAAGGATAAAGCACGCAAAGCAACAGGAATGCAAATAGATGCTACAGGAGATAATTACGGCGATCCTGATTTGTTTTCTATAAGTGCTATCAAGGGCGGAAAAGAACTCCAAGCTATTGAATCGGCTGAGCTTAATGTAGAAGATGCCCAAGGAGATAGTGAGAATGAGGATATTCAAACTCGTGAATACTCTGATGAGGAAATGGATTCTGACGAAGAACAGCAGAGGTATGATGCCCAACTTGAGGAAATGCTTGATGAAGCTTATGAGCGTTATGTAACTAAAAAGGGTGGTGAAGTGAAACAAGAACGCAAGCGTGCAAAACGAGTAAATACTGATGCTGATGAAGAATTATTAGAGGGAGGTGAAGATGACGGTGACGATGTTGACATGGATCAAGGTTCTGATGAAGAGCAAGATCAAGAGACCAATCCCCTTTTATTATCCCTAGATGCAGAGAAACCAACAAAAGAACAGATGATGGAGCAGTGGTTCAGCCAGGATGTATTCACAGAAGCAGGAACAGGTGTGGTTGAGCAGAGTGATAGTGAAGATGAAAGAGAGCAGCTAACTAGGATTGCAAAAAAGAAGGCGGATTCTGGAAAGAAGGAAAAGTCTGCTAAAGCAAAACACTTGCAACAGGACGATTTTGGGATTGTGCCAGCAGAACCAGTCCGAACTGAAGATGACTCATCTTCATCTTCTGATGAGTCTGATGAACTAGATGAGGACCTCGACGATGACACAAAAGCTGAAGTACTAGCCTATGCAAGGAAGATGTTGAGGAAGAAACAGAGAGAGCAGATACTTGACGACGCTTACAACAAGTACATGTTTGACGACGAGGGTTTACCTAAATGGTTTGCTGAGGATGAAAAGAGGCATAACCAGCCTATGAAGCCTGTAACAAAAGAGGAGGTAGCTGCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGGCCAGCCAAGAAGGTCGCTGAGGCTAAGGCTCGGAAGAAGCGCGTCGCCATGAAGAAGCTGGATAAGGCGCGCCAGAA-GGCAGATGCCATCGCAGATCAAAACGACATAAACGAGCAGTCAAAGAGGAAGATGATCGACAGGATTTACAAGAAGGCGATTCCAAAGAAGCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGCGTTCA-GGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAGAGGGCCA-GCAAAGTGAAGGGTGGCAAAGGAG-CTAAGGGCAAGGGGAAGAAGGGCG-GCGGCCAGAAAGGCGGTATGCGAGGG-AAAGCTGGGAGGAAAG-CCCAAAACTGAGTAGTAATAGAGCATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTCGTCAGATTAAAAAATCAGTCCCATCGTTTTTTAAGCCT]

[+] EMBL AK101119             [TAGCGCTCTCTCTCTCTCTCCCCCCACCCTCCCTTCGCCTATAGCTGAGGCGGCGGCTCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACGAAGGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCGCCAAGGAGCAGGGGTACCGGAGCCGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGTTCCGCTTCCTGCCGACGGCGCGCGCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCAACCACGCGCCCGTGGGGGCCTTCGTCGTCGGCGTCGACCTCGTCCCCATCCGCCCCTTCCGCGGCGCGCACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCGCCGTGCGGAGGCTCATGGACTCCAACGGCGTCGCCGCGTTCGACGTCGTGCTCCACGACGGGTCCCCCAACGTCGGTGGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTCGCCACCATGTTCCTCGCCCCCAAGGGTGCCTTCATC ACTAAGGTTTTCAGGTCTCAGGATTACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGTTGAAGTCACTAAACCTACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCTGCAAAGATTCAGCCAGAACTTTTGGATATAAAGCATTTGTTCAGTGTGGATCCAGATCCTAAAAAGGTTAGGGATCCTCTCAAGCCGGACAGACAGAAGAGGAACCGTGATGGATACGAAGAAGGAAATACAACATTGCGAAAAGTTGGTCTGGCTTCAGATTTTATATGGTCTGAGGGCCAAACGCCCCTAGAGTTTCTTGGTTCTTTTAATGCAATTTCATTTGATGACCCAGCATCTCTTCCTATCAAGAACCATGAGCTTACTACAGATGAGATAAAAGCTCTTTGTAAGGATTTGTATGTACTGGACAAAAACAGCTTCAAGCATATCTTGAAATGGCGGATACGCATACGGAAAGCACTATCATCTTCTGAAGTCACTAAAAAAACTGATGATACTGCGGTGGAAGTCAATGTCAAGGATGATGACCAACTTCTACAGGAAATGGAAGAATTGACGAGTGTCATTGATAGAAAGAAGAAGAGAGAAAAGAAGCGTCAATCAAAGCGCCGTGCAAAGGATAAAGCACGCAAAGCAACAGGAATGCAAATAGATGCTACAGGAGATAATTACGGCGATCCTGATTTGTTTTCTATAAGTGCTATCAAGGGCGGAAAAGAACTCCAAGCTATTGAATCGGCTGAGCTTAATGTAGAAGATGCCCAAGGAGATAGTGAGAATGAGGATATTCAAACTCGTGAATACTCTGATGAGGAAATGGATTCTGACGAAGAACAGCAGAGGTATGATGCCCAACTTGAGGAAATGCTTGATGAAGCTTATGAGCGTTATGTAACTAAAAAGGGTGGTGAAGTGAAACAAGAACGCAAGCGTGCAAAACGAGTAAATACTGATGCTGATGAAGAATTATTAGAGGGAGGTGAAGATGACGGTGACGATGTTGACATGGATCAAGGTTCTGATGAAGAGCAAGATCAAGAGACCAATCCCCTTTTATTATCCCTAGATGCAGAGAAACCAACAAAAGAACAGATGATGGAGCAGTGGTTCAGCCAGGATGTATTCACAGAAGCAGGAACAGGTGTGGTTGAGCAGAGTGATAGTGAAGATGAAAGAGAGCAGCTAACTAGGATTGCAAAAAAGAAGGCGGATTCTGGAAAGAAGGAAAAGTCTGCTAAAGCAAAACACTTGCAACAGGACGATTTTGGGATTGTGCCAGCAGAACCAGTCCGAACTGAAGATGACTCATCTTCATCTTCTGATGAGTCTGATGAACTAGATGAGGACCTCGACGATGACACAAAAGCTGAAGTACTAGCCTATGCAAGGAAGATGTTGAGGAAGAAACAGAGAGAGCAGATACTTGACGACGCTTACAACAAGTACATGTTTGACGACGAGGGTTTACCTAAATGGTTTGCTGAGGATGAAAAGAGGCATAACCAGCCTATGAAGCCTGTAACAAAAGAGGAGGTAGCTGCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGGCCAGCCAAGAAGGTCGCTGAGGCTAAGGCTCGGAAGAAGCGCGTCGCCATGAAGAAGCTGGATAAGGCGCGCCAGAAGGGCAGATGCCATCGCAGATCAAAACGACATAAACGAGCAGTCAAAGAGGAAGATGATCGACAGGATTTACAAGAAGGCGATTCCAAAGAAGCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGCGTTCA GGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAGAGGGCCA GCAAAGTGAAGGGTGGCAAAGGAG CTAAGGGCAAGGGGAAGAAGGGCG GCGGCCAGAAAGGCGGTATGCGAGGG AAAGCTGGGAGGAAAG CCCAAAACTGAGTAGCAATAGAGCATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTCGTCAGATTATATTTTCAGTCCCATCGTTTTTTAAGCCT]
[+] EMBL CB669809             [                        CACCCTCCCTTCTCCTATAGCTGAGGCGGCGGCTCGTCCGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACGAATGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCTCCAAGGAGCAGGGGTACCGGAGCCGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGGTCCGCTTCCTGCCGACGGCGCGCGCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCTACCACGCGCCCGTGGGGGCCTTCGTCGGCGGCGGCGACCTCATCCCCATCCGCCCCATCCGCGGCGCGCACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCTCCGTGCGGACGCTCATGGACTCCAACGGCGTCGCCGCGTTCGACCTCCTGCTCCACCACGGGCCCCCCAACGTCTGTGGCCCGTGGGCGCATGAGGACAACGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTCGACACCATGTGCCTCGCCCCCTCGGGTGCCTTCATCGGCTAAGGTTTGCAGGTCTCACGATTACAACGCTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB632464             [                                       ccTAGCTGAGGCGGCGGCTCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACGAAGGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCGCCAAGGAGCAGGGGTACCGGAGCCGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGTTCCGCTTCCTGCCGACGGCGCGCGCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCAACCACGCGCCCGTGGGGGCCTTCGTCGTCGGCGTCGACCTCGTCCCCATCCGCCCCATCCGCGGCGCGCACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCGCCGTGCGGAGGCTCATGGACTCCAACGGCGTCGCCGCGTTCGACGTCGTGCTCCACGACGGGTCCCCCAACGTCGGTGGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTCGCCACCATGTTCCTCGCCCCCGAGGGTGCCTTCATC ACTAAGGTTTTCAGGTCTCAGGATTACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGCTGAAGTCACTAAACCTACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCTGCAAAGATTCAGCCAGAACTTTTGGATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB627216             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGTGCTCCACGACGGGTCCCCCAACGTCGGTGGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTCGCCACCATGTTCCTCGCCCCCAAGGGTGCCTTCATC ACTAAGGTTTTCAGGTCTCAGGATTACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGTTGAAGTCACTAAACCTACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCTGCAAAGATTCAGCCAGAACTTTTGGATATAAAGCATTTGTTCAGTGTGGATCCAGATCCTAAAAAGGTTAGGGATCCTCTCAAGCCGGACAGACAGAAGAGGAACCGTGATGGATACGAAGAAGGAAATACAACATTGCGAAAAGTTGGTCTGGCTTCAGATTTTATATGGTCTGAGGGCCAAACGCCCCTAGAGTTTCTTGGTTCTTTTAATGCAATTTCATTTGATGACCCAGCATCTCTTCCTATCAAGAACCATGAGCTTACTACAGATGAGATAAAAGCTCTTTGTGAGGATTTGTATGTACTGGACAAAAACAGCTTCAAGCATATCTTGAAATGGCGGATACGCATACGGAAAGCACTATCATCTTCTGAAGTCACTAAAAAAACTGATGATACTGCGGTGGAAGTCAATGTCAAGGATGATGACCAACTTCTACAGGAAATGGAAGAATTGACGAGTGTCTTTGATAGAAAGAAGAAGAGAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB632465             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGACTCATCTCCATCTTCTGATGAGTCTGATGAACTAGATGAGGACCTCGACGATGACACAAAAGCTGAAGTACTAGCCTATGCAAGGAAGATGTTGAGGAAGAAACAGAGAGAGCAGATACTTGACGACGCTTACAACAAGTACATGTTTGACGACGAGGGTTTACCTAAATGGTTTGCTGAGGATGAAAAGAGGCATAACCAGCCTATGAAGCCTGTAACAAAAGAGGAGGTAGCTGCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGGCCAGCCAAGAAGGTCGCTGAGGCTAAGGCTCGGAAGAAGCGCGTCGCCATGAAGAAGCTGGATAAGGCGCGCCAGAA GGCAGATGCCATCGCAGATCAAAACGACATAAACGAGCAGTCAAAGAGGAAGATGATCGACAGGATTTACAAGAAGGCGATTCCAAAGAAGCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGCGTTCA GGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAGAGGGCCA GCAAAGTGAAGGGTGGCAAAGGAG CTAAGGGCAAGGGGAAGAAGGGCG GCGGCCAGAAAGGCGGTATGCGAGGG AAAGCTGGGAGGAAAG CCCAAAACTGAGTAGTAATAGAGCATGACTGAATTTTCTACTGAGTTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTATAACTTACCGAATTCATATGTACGGAATTTATGAATGCGTGAATTATCAGTTGTC                                        ]
[-] EMBL CB627217             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACATGTTTGACGACGAGGGTTTCCCTAAATGGTTTGCTGAGGATGAAAAGAGGCATACCCACCCTATGAACCCTGTAACAAAAGAGGAGGTAGCTCCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGCCCACCCAAGAAGGTCGCTGAGGTTAAGGCTCGGAAGAAGCGCGTCCCCATGAAGAAGCTGGATAAGGCGCCCCAGAA GGCAGATCCCATCGCAGATCAAAACGCCATAAACGACCAGTCAAAGAGGAAGATGATCGCCAGGATTTCCAAGAAGGCGATTCCAAAGAACCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGCGTTCA GGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGCCAAGAGGCCCA GCAAAGTGAAGGGTGGCAAAGGAG CTAAGGCCAAGGGGAAGAAGGGCG GCGCCCAGAAAGGCGGTATGCGAGGG AAAGCTGGGAGGAAAC CCCAAAACTGAGTAGTAATAGACCATGCCTGAATTTTTTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTATAACTTCCCGAATTCATATGTACGGAATTTTTAAATGCGGGAATTATCAGT                                            ]
[+] EMBL AU070828             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACGTTGTCGCAAAGAAGGGCGTTCA GGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAGAGGGCCA GCAAAGTGAAGGGTGGCAAAGGAG CTAAGGGCAAGGGGAAGAAGGGCG GCGGCCAGAAAGGCGGTATGCGAGGG AAAGCTGGGAGGAAAG CCCAAAACTGAGTAGCAATAGAGCATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTACTTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTCGTCAGATTAAAAAA                        ]
[+] EMBL BM418878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTTCACGGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACTAGAGGGCCATGCCAAGTGAAGGGTGGC AAGGAGTCTAAGGGC AGGGGAAGAAGGGCGTGC GCCAGAAA GCGGTATGCGAGGGNAACNCTGGGAGGAAAGCCCCCAAACTGAGTAGTAATAGAGCATGACTGAATTTTCTACTGAATTTTTGTTCA TGGCTCTACTGCTC ATTTTTGTTTACTTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCCNTTGTCTCGTCAGATTAAAAAAaa                      ]




>consensus_11441#0
TAGCGCTCTCTCTCTCTCTCCCCCCACCCTCCCTTCGCCTATAGCTGAGGCGGCGGCTCG
TCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACG
AAGGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCGCCAAGGAGCAGGGGTACCGGAGC
CGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGTTCCGCTTCCTGCCGACGGCGCGC
GCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCAACCACGCG
CCCGTGGGGGCCTTCGTCGTCGGCGTCGACCTCGTCCCCATCCGCCCCATCCGCGGCGCG
CACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCGCCGTGCGGAGGCTCATG
GACTCCAACGGCGTCGCCGCGTTCGACGTCGTGCTCCACGACGGGTCCCCCAACGTCGGT
GGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTC
GCCACCATGTTCCTCGCCCCCAAGGGTGCCTTCATCACTAAGGTTTTCAGGTCTCAGGAT
TACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGTTGAAGTCACTAAACCT
ACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCT
GCAAAGATTCAGCCAGAACTTTTGGATATAAAGCATTTGTTCAGTGTGGATCCAGATCCT
AAAAAGGTTAGGGATCCTCTCAAGCCGGACAGACAGAAGAGGAACCGTGATGGATACGAA
GAAGGAAATACAACATTGCGAAAAGTTGGTCTGGCTTCAGATTTTATATGGTCTGAGGGC
CAAACGCCCCTAGAGTTTCTTGGTTCTTTTAATGCAATTTCATTTGATGACCCAGCATCT
CTTCCTATCAAGAACCATGAGCTTACTACAGATGAGATAAAAGCTCTTTGTAAGGATTTG
TATGTACTGGACAAAAACAGCTTCAAGCATATCTTGAAATGGCGGATACGCATACGGAAA
GCACTATCATCTTCTGAAGTCACTAAAAAAACTGATGATACTGCGGTGGAAGTCAATGTC
AAGGATGATGACCAACTTCTACAGGAAATGGAAGAATTGACGAGTGTCATTGATAGAAAG
AAGAAGAGAGAAAAGAAGCGTCAATCAAAGCGCCGTGCAAAGGATAAAGCACGCAAAGCA
ACAGGAATGCAAATAGATGCTACAGGAGATAATTACGGCGATCCTGATTTGTTTTCTATA
AGTGCTATCAAGGGCGGAAAAGAACTCCAAGCTATTGAATCGGCTGAGCTTAATGTAGAA
GATGCCCAAGGAGATAGTGAGAATGAGGATATTCAAACTCGTGAATACTCTGATGAGGAA
ATGGATTCTGACGAAGAACAGCAGAGGTATGATGCCCAACTTGAGGAAATGCTTGATGAA
GCTTATGAGCGTTATGTAACTAAAAAGGGTGGTGAAGTGAAACAAGAACGCAAGCGTGCA
AAACGAGTAAATACTGATGCTGATGAAGAATTATTAGAGGGAGGTGAAGATGACGGTGAC
GATGTTGACATGGATCAAGGTTCTGATGAAGAGCAAGATCAAGAGACCAATCCCCTTTTA
TTATCCCTAGATGCAGAGAAACCAACAAAAGAACAGATGATGGAGCAGTGGTTCAGCCAG
GATGTATTCACAGAAGCAGGAACAGGTGTGGTTGAGCAGAGTGATAGTGAAGATGAAAGA
GAGCAGCTAACTAGGATTGCAAAAAAGAAGGCGGATTCTGGAAAGAAGGAAAAGTCTGCT
AAAGCAAAACACTTGCAACAGGACGATTTTGGGATTGTGCCAGCAGAACCAGTCCGAACT
GAAGATGACTCATCTTCATCTTCTGATGAGTCTGATGAACTAGATGAGGACCTCGACGAT
GACACAAAAGCTGAAGTACTAGCCTATGCAAGGAAGATGTTGAGGAAGAAACAGAGAGAG
CAGATACTTGACGACGCTTACAACAAGTACATGTTTGACGACGAGGGTTTACCTAAATGG
TTTGCTGAGGATGAAAAGAGGCATAACCAGCCTATGAAGCCTGTAACAAAAGAGGAGGTA
GCTGCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGGCCAGCCAAGAAGGTCGCTGAG
GCTAAGGCTCGGAAGAAGCGCGTCGCCATGAAGAAGCTGGATAAGGCGCGCCAGAAGGCA
GATGCCATCGCAGATCAAAACGACATAAACGAGCAGTCAAAGAGGAAGATGATCGACAGG
ATTTACAAGAAGGCGATTCCAAAGAAGCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGC
GTTCAGGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAG
AGGGCCAGCAAAGTGAAGGGTGGCAAAGGAGCTAAGGGCAAGGGGAAGAAGGGCGGCGGC
CAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAAACTGAGTAGTAATAGAG
CATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTAC
TTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTC
GTCAGATTAAAAAATCAGTCCCATCGTTTTTTAAGCCT

consensusID : consensus_11441#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 216
fasta sequence

                              [GCACGAGCTCGTGCCGAACCCGGAACGTGCCTAAACCGAGTAGCAAAGTGAAGGGTGGCAAAGGAGCNGAGGGCTTGGGGAAGAAGGGCGGCGGCCAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAAAATGAGTANAAATAAAGAATGAATGAATTTTATAATGAATTTTTGTTAAATGGATATAATGATAAATTTTTGTTTAAT]

[+] EMBL BE230402             [GCACGAGCTCGTGCCGAACCCGGAACGTGCCTAAACCGAGTAGCAAAGTGAAGGGTGGCAAAGGAGCNGAGGGCTTGGGGAAGAAGGGCGGCGGCCAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAAAATGAGTANAAATAAAGAATGAATGAATTTTATAATGAATTTTTGTTAAATGGATATAATGATAAATTTTTGTTTAAT]




>consensus_11441#1
GCACGAGCTCGTGCCGAACCCGGAACGTGCCTAAACCGAGTAGCAAAGTGAAGGGTGGCA
AAGGAGCNGAGGGCTTGGGGAAGAAGGGCGGCGGCCAGAAAGGCGGTATGCGAGGGAAAG
CTGGGAGGAAAGCCCAAAAATGAGTANAAATAAAGAATGAATGAATTTTATAATGAATTT
TTGTTAAATGGATATAATGATAAATTTTTGTTTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11441#0      TAGCGCTCTCTCTCTCTCTCCCCCCACCCTCCCTTCGCCTATAGCTGAGGCGGCGGCTCG 60
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      TCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGCAGCAATGGGGAAGACG 120
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAGGGGAAGCAGCGGCAGGACAAGTTCTACCACCTCGCCAAGGAGCAGGGGTACCGGAGC 180
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CGCGCGGCCTTCAAGCTGCTCCAGCTCGACGCGCGGTTCCGCTTCCTGCCGACGGCGCGC 240
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCGGTGCTCGACCTCTGCGCGGCGCCCGGGGGATGGGTCCAGGTGGCCGTCAACCACGCG 300
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CCCGTGGGGGCCTTCGTCGTCGGCGTCGACCTCGTCCCCATCCGCCCCATCCGCGGCGCG 360
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CACTCCCTCACGGAGGACATCACCACCACCAAGTGCCGCGCCGCCGTGCGGAGGCTCATG 420
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GACTCCAACGGCGTCGCCGCGTTCGACGTCGTGCTCCACGACGGGTCCCCCAACGTCGGT 480
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GGCGCGTGGGCGCAGGAGGCCACCGCGCAATCGTCGCTCGTCATCGACGCCGTGCGCCTC 540
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCCACCATGTTCCTCGCCCCCAAGGGTGCCTTCATCACTAAGGTTTTCAGGTCTCAGGAT 600
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      TACAACGCTATTATGTACTGTCTTAAACAGTTATTTGAGAAGGTTGAAGTCACTAAACCT 660
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      ACTGCAAGTCGTTCTACGTCTGCAGAAATTTATATTATCTGTCTGAGATATAAAGCTCCT 720
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCAAAGATTCAGCCAGAACTTTTGGATATAAAGCATTTGTTCAGTGTGGATCCAGATCCT 780
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAAAAGGTTAGGGATCCTCTCAAGCCGGACAGACAGAAGAGGAACCGTGATGGATACGAA 840
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GAAGGAAATACAACATTGCGAAAAGTTGGTCTGGCTTCAGATTTTATATGGTCTGAGGGC 900
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CAAACGCCCCTAGAGTTTCTTGGTTCTTTTAATGCAATTTCATTTGATGACCCAGCATCT 960
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CTTCCTATCAAGAACCATGAGCTTACTACAGATGAGATAAAAGCTCTTTGTAAGGATTTG 1020
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      TATGTACTGGACAAAAACAGCTTCAAGCATATCTTGAAATGGCGGATACGCATACGGAAA 1080
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCACTATCATCTTCTGAAGTCACTAAAAAAACTGATGATACTGCGGTGGAAGTCAATGTC 1140
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAGGATGATGACCAACTTCTACAGGAAATGGAAGAATTGACGAGTGTCATTGATAGAAAG 1200
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAGAAGAGAGAAAAGAAGCGTCAATCAAAGCGCCGTGCAAAGGATAAAGCACGCAAAGCA 1260
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      ACAGGAATGCAAATAGATGCTACAGGAGATAATTACGGCGATCCTGATTTGTTTTCTATA 1320
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AGTGCTATCAAGGGCGGAAAAGAACTCCAAGCTATTGAATCGGCTGAGCTTAATGTAGAA 1380
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GATGCCCAAGGAGATAGTGAGAATGAGGATATTCAAACTCGTGAATACTCTGATGAGGAA 1440
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      ATGGATTCTGACGAAGAACAGCAGAGGTATGATGCCCAACTTGAGGAAATGCTTGATGAA 1500
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCTTATGAGCGTTATGTAACTAAAAAGGGTGGTGAAGTGAAACAAGAACGCAAGCGTGCA 1560
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAACGAGTAAATACTGATGCTGATGAAGAATTATTAGAGGGAGGTGAAGATGACGGTGAC 1620
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GATGTTGACATGGATCAAGGTTCTGATGAAGAGCAAGATCAAGAGACCAATCCCCTTTTA 1680
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      TTATCCCTAGATGCAGAGAAACCAACAAAAGAACAGATGATGGAGCAGTGGTTCAGCCAG 1740
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GATGTATTCACAGAAGCAGGAACAGGTGTGGTTGAGCAGAGTGATAGTGAAGATGAAAGA 1800
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GAGCAGCTAACTAGGATTGCAAAAAAGAAGGCGGATTCTGGAAAGAAGGAAAAGTCTGCT 1860
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      AAAGCAAAACACTTGCAACAGGACGATTTTGGGATTGTGCCAGCAGAACCAGTCCGAACT 1920
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GAAGATGACTCATCTTCATCTTCTGATGAGTCTGATGAACTAGATGAGGACCTCGACGAT 1980
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GACACAAAAGCTGAAGTACTAGCCTATGCAAGGAAGATGTTGAGGAAGAAACAGAGAGAG 2040
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      CAGATACTTGACGACGCTTACAACAAGTACATGTTTGACGACGAGGGTTTACCTAAATGG 2100
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      TTTGCTGAGGATGAAAAGAGGCATAACCAGCCTATGAAGCCTGTAACAAAAGAGGAGGTA 2160
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCTGCCATGAGGGCTCAGTTCAAGGAGATCGATGCTCGGCCAGCCAAGAAGGTCGCTGAG 2220
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GCTAAGGCTCGGAAGAAGCGCGTCGCCATGAAGAAGCTGGATAAGGCGCGCCAGAAGGCA 2280
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GATGCCATCGCAGATCAAAACGACATAAACGAGCAGTCAAAGAGGAAGATGATCGACAGG 2340
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      ATTTACAAGAAGGCGATTCCAAAGAAGCCCCAGAAGGAGTACGTTGTCGCAAAGAAGGGC 2400
consensus_11441#1      ------------------------------------------------------------
                                                                                   

consensus_11441#0      GTTCAGGTGAGGGCTGGCAAAGGGAAGATACTGGTGGATAAGCGTATGAAGAAGGACAAG 2460
consensus_11441#1      -----------------------GCACGAGCTCGTGCCGAACCCG--GAACGTGCCTAAA 35
                                              * *    ** ***   ** *    ***   *   ** 

consensus_11441#0      AGGGCCAGCAAAGTGAAGGGTGGCAAAGGAGCTAAGGGCAAGGGGAAGAAGGGCGGCGGC 2520
consensus_11441#1      CCGAGTAGCAAAGTGAAGGGTGGCAAAGGAGCNGAGGGCTTGGGGAAGAAGGGCGGCGGC 95
                         *   **************************  *****  *******************

consensus_11441#0      CAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAAACTGAGTAGTAATAGAG 2580
consensus_11441#1      CAGAAAGGCGGTATGCGAGGGAAAGCTGGGAGGAAAGCCCAAAAATGAGTANAAATAAAG 155
                       ******************************************** ******  **** **

consensus_11441#0      CATGACTGAATTTTCTACTGAATTTTTGTTCAGTGGCTCTACTGCTCAATTTTTGTTTAC 2640
consensus_11441#1      AATGAATGAATTTTATAATGAATTTTTGTTAAATGGATATAATGATAAATTTTTGTTTAA 215
                        **** ******** ** ************ * *** * ** ** * ************ 

consensus_11441#0      TTATAACTTACCGAATTCATATGTACGGAATTTTTAAATGCGTGAATTATCAGTTGTCTC 2700
consensus_11441#1      T----------------------------------------------------------- 216
                       *                                                           

consensus_11441#0      GTCAGATTAAAAAATCAGTCCCATCGTTTTTTAAGCCT 2738
consensus_11441#1      --------------------------------------