These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 769 fasta sequence [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC-CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG] [+] EMBL AU184871 [TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCC ] [+] EMBL AU078360 [ GGTGAGAGCGGGAGTNGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACNGCTACCCGGCGCA CGCNACCCCGCGGGGTACNCGTACCC ] [+] EMBL CB653346 [ TGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCGCCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAGCCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACGACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACCCGGCGCAGCCGC CCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCCGCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATG ] [+] EMBL AU184865 [ CGTACCCGGCGGCGAACNCCGGGAGGCCTGGCCGCANCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCGGCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCNCGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAAaaaaaaa ] [+] EMBL AU070724 [ ACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCNTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGNAAATATATAAATATGATTTGGNATGCGTATTGTCTAAAAAAAAAA ] [+] EMBL AK058770 [ TTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTATTGTCTAAATCGTTGTGTGCTGCCTGAATCATATTACTTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCAAATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG] consensusID : consensus_11446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA] [+] EMBL OSA298285 [TTTTCGTCCGCAATATTTTGTTTGATTTTATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAAAACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCACAACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTGACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTGCTCGTGTTCTATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTTGCTCTTA] consensusID : consensus_11446#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA] [+] EMBL AU095626 [GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCGGGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTGCTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATATGATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA] consensusID : consensus_11446#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA] [+] EMBL BQ907259 [CCGAACACGAGCAGATAAGCAACAACTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTTGCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATATAAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11446#0 TGGTGAGAGCGGGAGTGGCTCTCCATGCCCTTCACGCCGGCGTTGGAAGAGGCGCCGCCG 60 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 ------------------------------------------------------------ consensus_11446#0 CCTCCCTCAGCCCGGCCGCGGTGGTGATCTTGGCCGTCGCCGCAACGGTGGCCGTGGCAG 120 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 ------------------------------------------------------------ consensus_11446#0 CCGTCGCCGCGTTCGGCTGCGCGGACGGGGCCAAGAGGCAGCGGCGGAAGAACAGGAACG 180 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 ------------------------------------------------------------ consensus_11446#0 ACGTCTACTACTACGGCCAGGGGTACCCGCCGCCGCCTCCCGCCGGCGCGTACGGCTACC 240 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 --------------------------------TTTTCGTCCGCAATATTTTGTTTGATTT 28 consensus_11446#0 CGGCGCAGCCGCCCCCCGCGGGGTACGCGTACCCGGCGGCGAACGCCGGGAGGCCTGGCC 300 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 TATTCATGCAGAAATTAATCGTGATTACATATATATGCAGACCCGATCATAAACCGAAAA 88 consensus_11446#0 GCAGCGGGTTCGGCCCAGGAGCCGGGCTCGCCGTCGGCGCCGCCGCGGGGCTCGCCACCG 360 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 ------------------------------------------------------------ consensus_11446#1 AACAAAACAAAAGAAGAAAAGATACATGCACGTAACCACTCACGACTTCTTGCGCGTCAC 148 consensus_11446#0 GCGCCATCATCGCCTCGGCCGTTGACTCCGGCGGAGGCGGGTGCGGCGGCGGCGGGTGCG 420 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 -------------------GGATCGCGGCGACGGAGGCGGGTGCGGCGGCGGCGGGTGCG 41 consensus_11446#1 AACTCGATCACAATTCCCAAAGCACCATGATCGGTCGTCATCGATCATTCGAAGGCCGTG 208 consensus_11446#0 GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 480 consensus_11446#3 -----------------------------------CCGAACACGAGCAGATAAGCAACAA 25 consensus_11446#2 GGGGCGGTGGCTGCGGCGGCGGCTGCGGCGGTTGACGCGTGACGAGTTGTTGCTTATCTG 101 consensus_11446#1 ACGGAGGTGGCTGCGGCGGCGGCTGCGGCGGTTGATGCGTGATGAGTTGTTGCTTATCTG 268 * *** * * * * consensus_11446#0 CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 540 consensus_11446#3 CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 85 consensus_11446#2 CTCGTGTTCGTATTTGGTTACTATAGTGGTTAGGCAGGCTGTCAGCTTCTCTAACTATTT 161 consensus_11446#1 CTCGTGTTC-TATTTGGTTACTATAGTGGTTAGGACGGCGTTCAGCTTCTCTAACTATTT 327 ********* ************************ *** ******************* consensus_11446#0 GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 600 consensus_11446#3 GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 145 consensus_11446#2 GCTCTTATTTGTTTATTCGCACGATTATTTGTAATGCATGATTACATCGTGAAAATATAT 221 consensus_11446#1 GCTCTTA----------------------------------------------------- 334 ******* consensus_11446#0 AAATATG-ATTTGGAATGCGTAT-TGTCTAAAAAAAAAAGTGCTGCCTGAATCATATTAC 658 consensus_11446#3 AAATACGCATTCCAATCATATTTATATATTTTGGAATGCGTATTGTCTAAAAAAAAAA-- 203 consensus_11446#2 AAATATG-ATTTGGAATGCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 280 consensus_11446#1 ------------------------------------------------------------ consensus_11446#0 TTTTCGGGGATTGCTGCCTGAATCATATAAGAGGTAGAAGCCAAATGAAATGCCTCTTCA 718 consensus_11446#3 ------------------------------------------------------------ consensus_11446#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAA--------- 331 consensus_11446#1 ------------------------------------------------------------ consensus_11446#0 AATTATCTCAATCATTGAGAGGTCCTTAACATGAATTGAGAATTTTGCCGG 769 consensus_11446#3 --------------------------------------------------- consensus_11446#2 --------------------------------------------------- consensus_11446#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||