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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2130 fasta sequence
[CTTGCAATAGCAGAGCAGGGTATATAAAATCCGGCGGCGCCGTCGGGGCCACCTTCACCGTCGCGCTCCTCGCCGCCGCGCTGCTCCTCGCCCTCTCCTTGTACGCCTCCTCCCTGCCCCGCGCGCCTACCACGCCCTCCTCCTCCTCTAACCTCGTCGGCCTCACCCTCGTCCGCCGCGCCAAGGAGAAGGGCGCGGTGTGCTTGGATGGGAGCGCGCCGGGGTACCATCTGCAGAGAGGCTCCGGCACTGGATCTCAAAACTGGCTCCTTCACTTGGAGGGCGGAGGCTGGTGCCGGAATCTGAGGTCATGTGCTTCACGTCAAAAATCGGTGTTGGGTTCATCGCAATACATGGAATGCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGAACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAATGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGCTTTTCTAACAGGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTACCAAAGGATTCT-AGGGTTAAGTGTCTTGCGGATGGTGGATTTTTCCTCGATGTAGAGGACATTTCT-GGGCAAAGGACCATGCGAGCATTCTACAACGATGTTGTCCGTCTTCAGGATCTGCGTGGAAGGTTTCCCCATTGTGGTCCAAACATGGATCTGGGCCAGTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGGTAATGCTTTCATCCTCTAAAAAGAAAACAGAAAGAAAAAAAATGTCTACAGTTCAAGGAACATTATATATTATGTCAAATTGACAAATTGTAGGTTAGCCTGTGTTGAGGGCTAGCCTTTGCAAATTTATGGTGACCGTCAGCTGACTTAACATCTAGTATTTACAGTGATGATGTTCTTGAGATTATTTATGTGTTTTAAACTATTCGATGTACAAGAAAGAAAGGTGTCCTGTTAGTCACAAGATAAGAGTGACTCTATAAATAGTTTGCCGAGGATTCAGCCTATAAAAAAACAGGAAGAAGCTCCTCAGCAGTCAGCTGTGCTACTGCTGTACATGAGTACATCGTCTAAGCCCCATAAATATATTATTTAATGTAACATCACAGGACATCCCTTTGTAGGTCATCTGTTGTAGATTGCATGTCTCCACTACGGCATTACCTCATGTTAGTTTAATTTCCTGCACATGATACTTACTGAGCTAACCATGAAGGTGTCAGTATTCCTCCAATCTTCTTGGTTTACTTCTTCAATATTTTGCTCGTGGTCTAACGTTGAATCTGCTGAATAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAAAAAAAA]
[+] EMBL AK068437 [CTTGCAATAGCAGAGCAGGGTATATAAAATCCGGCGGCGCCGTCGGGGCCACCTTCACCGTCGCGCTCCTCGCCGCCGCGCTGCTCCTCGCCCTCTCCTTGTACGCCTCCTCCCTGCCCCGCGCGCCTACCACGCCCTCCTCCTCCTCTAACCTCGTCGGCCTCACCCTCGTCCGCCGCGCCAAGGAGAAGGGCGCGGTGTGCTTGGATGGGAGCGCGCCGGGGTACCATCTGCAGAGAGGCTCCGGCACTGGATCTCAAAACTGGCTCCTTCACTTGGAGGGCGGAGGCTGGTGCCGGAATCTGAGGTCATGTGCTTCACGTCAAAAATCGGTGTTGGGTTCATCGCAATACATGGAATGCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGAACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAATGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGCTTTTCTAACAGGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTACCAAAGGATTCT AGGGTTAAGTGTCTTGCGGATGGTGGATTTTTCCTCGATGTAGAGGACATTTCT GGGCAAAGGACCATGCGAGCATTCTACAACGATGTTGTCCGTCTTCAGGATCTGCGTGGAAGGTTTCCCCATTGTGGTCCAAACATGGATCTGGGCCAGTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGGTAATGCTTTCATCCTCTAAAAAGAAAACAGAAAGAAAAAAAATGTCTACAGTTCAAGGAACATTATATATTATGTCAAATTGACAAATTGTAGGTTAGCCTGTGTTGAGGGCTAGCCTTTGCAAATTTATGGTGACCGTCAGCTGACTTAACATCTAGTATTTACAGTGATGATGTTCTTGAGATTATTTATGTGTTTTAAACTATTCGATGTACAAGAAAGAAAGGTGTCCTGTTAGTCACAAGATAAGAGTGACTCTATAAATAGTTTGCCGAGGATTCAGCCTATAAAAAAACAGGAAGAAGCTCCTCAGCAGTCAGCTGTGCTACTGCTGTACATGAGTACATCGTCTAAGCCCCATAAATATATTATTTAATGTAACATCACAGGACATCCCTTTGTAGGTCATCTGTTGTAGATTGCATGTCTCCACTACGGCATTACCTCATGTTAGTTTAATTTCCTGCACATGATACTTACTGAGCTAACCATGAAGGTGTCAGTATTCCTCCAATCTTCTTGGTTTACTTCTTCAATATTTTGCTCGTGGTCTAACGTTGAATCTGCTGAATAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTCTATAAAATAAACAAAAAGT ]
[+] EMBL AU070514 [ GTCGGGGCCACCTTCACCGTCGCGCTCCTCGCCGCCGCGCTGCTCCTCGCCCTCTCCTTGTACGCCTCCTCCCTGCCCCGCGCGCCTACCACGCCCTCCTCCTCCTCTAACCTCGTCGGCCTCACCCTCGTCCGCCGCGCCAAGGAGAAGGGCGCGGTGTGCTTGGATGGGAGCGCGCCGGGGTACCATCTGCAGAGAGGCTCCGGCACTGGATCTCAAAACTGGCTCCTTCACTTGGAGGGCGGAGGCTGGTGCCGGAATCTGAGGTCATGTGCTTCACGTCAAAAATCGGTGTTGGGTTCATCGCAATACATGGAATGCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGAACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAATGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAA CAGGCTTTTCTAACAGGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTACCAAAGGATTCTAAGGGTTAAGTGTCTTNCGGATAGTGGATTTTTCCTCGATGTANAGGACA TTCTGGGGCAAAGGACCATGn ]
[+] EMBL AU101916 [ GAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAAAAAAAA]
consensusID : consensus_11454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 754 fasta sequence
[CCCCATTGTGGTCCAAACATGGATCTGGGCCAGTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAG-TTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTAG-GTTCTATAAAATAAACAAAAAGTGTA-TTTCTTGTAAAAAAGGGA]
[-] EMBL CB678908 [CCCCATTGTGGTCCAAACATGGATCTGGGCCAGTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAG TTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTAG GTTCTATAAAATAAACAAAAAGTGTA TTTCTTGTAAAAAAGGGA]
[+] EMBL CA766627 [ AAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGNTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGNTTTCTATNAAATAAACAAAAAGTGTATTTTCTT ]
consensusID : consensus_11454#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 742 fasta sequence
[GTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATTTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGATTGGATATTAGCAAGTGTGATTCGAACCAACTTTAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATATTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTTTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTTTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTTTAAACATGTTTTTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTTGGGTGTTTGACACCCAAAATCATACATTTGAGATAATTAGATTGGCGGAATTTTTTTTCGAGGCAATTTATTTAGGATTATAACGCCACCAGAGGCGCAGGTGGTGGCTCGCCGGCGCGGAGGCGGAGGAAGTGGGCGACGCCATGGGGATGGGGGATCCCTCGATTCGATCTGAATTCGAATTGAATTTTAGTGAATTTAATCGAATTGATCGCCTCCTCCTCTCGATTCGCCAGATTTTAT]
[-] EMBL CB678907 [GTTCTTAATCCAGCGTATGATGCTTGGCAGGTGCAACATTTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGCAGATTGGATATTAGCAAGTGTGATTCGAACCAACTTTAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATATTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTTTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTTTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTTTAAACATGTTTTTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTTGGGTGTTTGACACCCAAAATCATACATTTGAGATAATTAGATTGGCGGAATTTTTTTTCGAGGCAATTTATTTAGGATTATAACGCCACCAGAGGCGCAGGTGGTGGCTCGCCGGCGCGGAGGCGGAGGAAGTGGGCG ]
[-] EMBL CB639371 [ AGGTGGTGGCTCGCCGGCGCGGAGGCGGAGGACGTCGGCGACGCCATGGGGATGGGGGATCCCTCGATTCGATCTGAATTCGAATTGAATTTTAGTGAATTTAATCGAATTGATCGCCTCCTCCTCTCGATTCGCCAGATTTTAT]
consensusID : consensus_11454#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence
[TCGAGGCCGAGGGGATGTATAAGGTCGTTTAGCTCACCAAGAGGCCCACCCAGGGGGGTAGCATCTGCCCTCCACATTCATGCCTAGAACGCAGACTGTGTATTAGCCAGTGTGATTCGAACCACCTTGAAATTCTCCAAGGTCTTAGGAAAAAGCTACCTGCTACCATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAA]
[-] EMBL CA762226 [TCGAGGCCGAGGGGATGTATAAGGTCGTTTAGCTCACCAAGAGGCCCACCCAGGGGGGTAGCATCTGCCCTCCACATTCATGCCTAGAACGCAGACTGTGTATTAGCCAGTGTGATTCGAACCACCTTGAAATTCTCCAAGGTCTTAGGAAAAAGCTACCTGCTACCATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGACTCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTCAACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAGGAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACAACTTGGTTTTTGCCAAGCCTTTCAAGGCATGATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAACAGGAAATTTTATATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTGACACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTCCACGCAATTTATGTAGGATTATAAGTAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAACTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAA]
consensusID : consensus_11454#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence
[GGGATCGCAATACATGGAACGCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGAACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAATGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGCTTTTCTAACAGGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTACCAAAGGATTCTAGGGTTAAGTGTCTTGCGGATGGTGGATTTTTCCTCGATGTGTATGTTTCCAAATCACCTTTGCGCATGCTTTGTGATTTTCAATATTTTTTTCGTGCATGCATGAAGTACTTGCTAGATATTCTGTGTCAATCTGAGTATTTGCAGCTGTAGGCACAAATAGTAACTAGAAGACTTCAAACATCCAAGCTATTTGAGTGTATGAACATTGAANATCTTGTACTGACGTATATATAAAATGAAATCGTCCAACGAGATG]
[+] EMBL CA766402 [GGGATCGCAATACATGGAACGCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGAACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAATGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGCTTTTCTAACAGGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTACCAAAGGATTCTAGGGTTAAGTGTCTTGCGGATGGTGGATTTTTCCTCGATGTGTATGTTTCCAAATCACCTTTGCGCATGCTTTGTGATTTTCAATATTTTTTTCGTGCATGCATGAAGTACTTGCTAGATATTCTGTGTCAATCTGAGTATTTGCAGCTGTAGGCACAAATAGTAACTAGAAGACTTCAAACATCCAAGCTATTTGAGTGTATGAACATTGAANATCTTGTACTGACGTATATATAAAATGAAATCGTCCAACGAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CTTGCAATAGCAGAGCAGGGTATATAAAATCCGGCGGCGCCGTCGGGGCCACCTTCACCG 60
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 TCGCGCTCCTCGCCGCCGCGCTGCTCCTCGCCCTCTCCTTGTACGCCTCCTCCCTGCCCC 120
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 GCGCGCCTACCACGCCCTCCTCCTCCTCTAACCTCGTCGGCCTCACCCTCGTCCGCCGCG 180
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CCAAGGAGAAGGGCGCGGTGTGCTTGGATGGGAGCGCGCCGGGGTACCATCTGCAGAGAG 240
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 GCTCCGGCACTGGATCTCAAAACTGGCTCCTTCACTTGGAGGGCGGAGGCTGGTGCCGGA 300
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 ATCTGAGGTCATGTGCTTCACGTCAAAAATCGGTGTTGGGTTCATCGCAATACATGGAAT 360
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 GCCAGATTGAGTTTGCTGGGATCTTGAGTAATGACAAATTTCAAAACCCAGATTTTTACA 420
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 ATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTCAAGA 480
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 ACGAATTGCAGAATGGCACAAAATTCTTTTTCCGGGGCCAGCGTATCTGGGAGGCAGTAA 540
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 TGAGCGAACTTCTACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGCTTTTCTAACA 600
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 GGATGCTCTGCTGGTGGGCTAGCCACTTTCATTCACTGCGATAATTTCCGTACACTGCTA 660
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CCAAAGGATTCTAGGGTTAAGTGTCTTGCGGATGGTGGATTTTTCCTCGATGTAGAGGAC 720
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 ATTTCTGGGCAAAGGACCATGCGAGCATTCTACAACGATGTTGTCCGTCTTCAGGATCTG 780
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CGTGGAAGGTTTCCCCATTGTGGTCCAAACATGGATCTGGGCCAGTGCTTCTTCCCAAGT 840
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 GAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGG 900
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CAGGTGCAACATGTGTTGAGTCCAGTAGCATCTGACCCTCAACATTCATGGCTAGAATGC 960
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 AGACTGGATATTAGCAAGTGTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAA 1020
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 AAGTTACATGATACTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGAC 1080
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 TCATGCTTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTT 1140
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 AGAGTCAACAACAAGGTAATGCTTTCATCCTCTAAAAAGAAAACAGAAAGAAAAAAAATG 1200
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 TCTACAGTTCAAGGAACATTATATATTATGTCAAATTGACAAATTGTAGGTTAGCCTGTG 1260
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 ------------------------------------------------------------
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 TTGAGGGCTAGCCTTTGCAAATTTATGGTGACCGTCAGCTGACTTAACATCTAGTATTTA 1320
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 -------------------------------------CCCCATTGTGGTCCAAACATGGA 23
consensus_11454#3 ------------------------------------------------------------
consensus_11454#2 ------------------------------------------------------------
consensus_11454#0 CAGTGATGATGTTCTTGAGATTATTTATGTGTTTTAAACTATTCGATGTACAAGAAAGAA 1380
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 TCTGGGCCAGTGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGT 83
consensus_11454#3 --------------------------------------------------------TCGA 4
consensus_11454#2 ----------------------------------------------------------GT 2
consensus_11454#0 AGGTGTCCTGTTAGTCACAAGATAAGAGTGACTCTATAAATAGTTTGCCGAGGATTCAGC 1440
consensus_11454#4 ----------------------------------------GGGATCGCAATACATGGAAC 20
consensus_11454#1 TCTTAATCCAGC-GTATGATGCTTGGCAGGTGCAACATGTGTTGA----GTCCA-----G 133
consensus_11454#3 GGCCGAGGGGAT-GTATAAGG-TCGTTTAGCTCACCAAGAGGCCC----ACCCAGGGGGG 58
consensus_11454#2 TCTTAATCCAGC-GTATGATGCTTGGCAGGTGCAACATTTGTTGA----GTCCA-----G 52
consensus_11454#0 CTATAAAAAAACAGGAAGAAGCTCCTCAGCAGTCAGCTGTGCTACTGCTGTACATGAGTA 1500
consensus_11454#4 GCCAGATTGAGT-TTGCTGGGATCTTGAGTAATGACAAATTTCAAA---ACCCAGATTTT 76
* * * **
consensus_11454#1 TAGCATC----TGACCCTCA-ACATT-CATGGCTAGAATGCAG----ACTGGATATTAGC 183
consensus_11454#3 TAGCATC----TG-CCCTCC-ACATT-CATGCCTAGAACGCAG----ACTGTGTATTAGC 107
consensus_11454#2 TAGCATC----TGACCCTCA-ACATT-CATGGCTAGAATGCAG----ATTGGATATTAGC 102
consensus_11454#0 CATCGTC----TAAGCCCCATAAATA-TATTATTT-AATGTAACATCACAGGACATCCCT 1554
consensus_11454#4 TACAATTGGAATAAAGTTAAGATAAGGTATTGTGATGGGGCATCATTTTCTGGAAACGTC 136
* * * * * ** * * *
consensus_11454#1 AAGT--GTGATTCGAACCAACTTGAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATA 241
consensus_11454#3 CAGT--GTGATTCGAACCACCTTGAAATTCTCCAAGGTCTTAGGAAAAAGCTACCTGCTA 165
consensus_11454#2 AAGT--GTGATTCGAACCAACTTTAAATTCTCCAAGGTTTTAGGAAAAAGTTACATGATA 160
consensus_11454#0 TTGTAGGTCATCTGTTGTAGATTGCATGTCTCCA-----CTACGGCATTACCTCATGTTA 1609
consensus_11454#4 AAGAACGAATTGCAGAATGGCACAAAATTCTTT----TTCCGGGGCCAGCGTATCTGGGA 192
* * * * *** * ** *
consensus_11454#1 -----CTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGAC--TCATGC 294
consensus_11454#3 -----CCATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGAC--TCATGC 218
consensus_11454#2 -----TTATAAGTGAACTTAAGCACAAAAAGGACTGGGGCTTTTTTATCGAC--TCATGC 213
consensus_11454#0 -----GTTTAATT--TCCTGCACATGATACTTACTGAGCTAACCATGAAGGTG-TCAGTA 1661
consensus_11454#4 GGCAGTAATGAGCGAACTTC--TACTAAAGGGACTCAGGCATGCCAAACAGCTTTCAGGC 250
* * * * * * * *** * ***
consensus_11454#1 TTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTC 354
consensus_11454#3 TTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTCTCCATCTTCTCTTAGAGTC 278
consensus_11454#2 TTTATACACTGTCAGTCGTTGAACTCCTTGACTTGGCATTTTCCATCTTCTCTTAGAGTC 273
consensus_11454#0 TTCCTCCAATCTTCTTGGTTTACTTCTTCAATATTTTGCTCGTGGTCTAACGTTGAATCT 1721
consensus_11454#4 TTTTCTAACAG---GATGCTCTGCTGGTGGGCTAGCCACTTTC-ATTCACTGCGATAATT 306
** * * * * * * * *
consensus_11454#1 AACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAG 414
consensus_11454#3 AACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAG 338
consensus_11454#2 AACAACAAGACCATTGCAGAGGCGGTTGGAGATTGGTTTTTTGACAGAAGAGAGGTGAAG 333
consensus_11454#0 GCTGAATAGACCATTGCAGAGGCGGTTGGAGATTGGTTCTTTGACAGAAGAGAGGTGAAG 1781
consensus_11454#4 TCCG--TACACTGCTACCAAAGGATTCTAGGGTTAAGTGTCTTGCGGATGGTGGATTTT- 363
* ** * * * * * * ** * * * * ** * * *
consensus_11454#1 GAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACA-ACTTGGTTTTTGCCAAG-- 471
consensus_11454#3 GAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACA-ACTTGGTTTTTGCCAAG-- 395
consensus_11454#2 GAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACA-ACTTGGTTTTTGCCAAG-- 390
consensus_11454#0 GAAATTGATTGTGAATATCCCTGCAACCCGACTTGCCACA-ACTTGGTTTTTGCCAAG-- 1838
consensus_11454#4 ----TCCTCGATGTGTATGTTTCCAAATCACCTTTGCGCATGCTTTGTGATTTTCAATAT 419
* ** *** * *** * *** * ** *** ** ** ***
consensus_11454#1 CCTTTCAAGGCATG-ATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAA 530
consensus_11454#3 CCTTTCAAGGCATG-ATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAA 454
consensus_11454#2 CCTTTCAAGGCATG-ATGAAGTTTTAAACATGTTTTTCTTTTTGCCATGATATTGTAAAA 449
consensus_11454#0 CCTTTCAAGGCATG-ATGAAGTTCTAAACACGTTTCTCTTTTTGCCATGATATTGTAAAA 1897
consensus_11454#4 TTTTTTCGTGCATGCATGAAGTACTTGCTAGATATTCTGTGTCAATCTGAGTATTTGCAG 479
*** ***** ******* * * * * * * *** * * *
consensus_11454#1 CAGGAAATTTTA-TATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTG 589
consensus_11454#3 CAGGAAATTTTA-TATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTG 513
consensus_11454#2 CAGGAAATTTTA-TATCAATCATCGGTCATCATGTAATCTTCAGACTCGTTGGGTGTTTG 508
consensus_11454#0 CAGGAAATTTTA-TATCAATCATCGGTCATCATGTAATCTTCAGACTCGTCGGGTGTTTG 1956
consensus_11454#4 CTGTAGGCACAAATAGTAACTAGAAGACTTCA---AACATCCAAGCTATTTGAGTGTATG 536
* * * * ** ** * * * *** ** * ** ** * * **** **
consensus_11454#1 A-CACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATT 648
consensus_11454#3 A-CACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTT-CCACGCAATT 571
consensus_11454#2 A-CACCCAAAATCATACATTTGAGATAATTAGATTGGCGGAATTTTTTTTCGAGGCAATT 567
consensus_11454#0 A-CACCCAAAATCATACATCTGAGATAGTTAGACTGGCCGAATTTTTTTTCCACGCAATT 2015
consensus_11454#4 AACATTGAANATCTTGTA-CTGACGTATATATAA-AATGAAATCGTCCAACGAGATG--- 591
* ** ** *** * * *** ** ** * *** * * *
consensus_11454#1 TATGTAGGATTATAAG--TAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAA 706
consensus_11454#3 TATGTAGGATTATAAG--TAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAA 629
consensus_11454#2 TATTTAGGATTATAACGCCACCAGAGGCGCAGGTGGTGGCTCGCCGGCGCGGAGGCGGAG 627
consensus_11454#0 TATGTAGGATTATAAG--TAGTTTATTCAAAAGTAGAATTGTATGTGCTGTACTTCACAA 2073
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 CTAGGTT-CTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAGGGA----------- 754
consensus_11454#3 CTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAA--------- 680
consensus_11454#2 GAAGTGGGCGACGCCATGGGGATGGGGGATCCCTCGATTCGATCTGAATTCGAATTGAAT 687
consensus_11454#0 CTTGTTTTCTATAAAATAAACAAAAAGTGTATTTCTTGTAAAAAAAAAAAAAAAAAA--- 2130
consensus_11454#4 ------------------------------------------------------------
consensus_11454#1 -------------------------------------------------------
consensus_11454#3 -------------------------------------------------------
consensus_11454#2 TTTAGTGAATTTAATCGAATTGATCGCCTCCTCCTCTCGATTCGCCAGATTTTAT 742
consensus_11454#0 -------------------------------------------------------
consensus_11454#4 -------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||