These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 636 fasta sequence [ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG-T-AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA-GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA754466 [ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGG ] [+] EMBL AK058995 [ CATCTCTCTCGCAACTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTG ] [+] EMBL C91596 [ catnCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG TNAGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAA TTCTCAAATCAGTGATTTGTATTATATGTTTG ] [+] EMBL AU070719 [ CTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCA CGTT AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCANCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGG ] [+] EMBL OSS15579A [ TCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCANCT N AGGTNGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGG ] [+] EMBL AU070437 [ TCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGNTGNCACTACTCTCGGAGGCGAGCCACGGGGTGGCTNGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGTATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGNAGGCGGGGTGGCC ] [+] EMBL C74667 [ ACGGGGTGGCTGGATCCGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCA CT N AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATNGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTn ] [+] EMBL AU088649 [ GATCCNGCATCAGCAGCAGACGGGGNTGGCTGGATCCGGCGTCGGCAGCAGGCGGGGTGNCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCG T AGGTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCGGCGGGCGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACA GGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTTTGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCAAAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGAGCTTGGGATCTAAAAAAAAAAAAAA] [+] EMBL AU162042 [CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTTTGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCAAAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGAGCTTGGGATCTAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11456#0 ACCACACTTAAATTTGCCTTATCTATCTACTGAGCGGCCGAGCCCATCTCTCTCGCAACT 60 consensus_11456#1 ------------------------------------------------------------ consensus_11456#0 TCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCAATCGAGGAGGCGGATGCAGGCGGC 120 consensus_11456#1 ------------------------------------------------------------ consensus_11456#0 AAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATCCGGCGTCGGCGGC 180 consensus_11456#1 ------------------------------------------------------------ consensus_11456#0 AGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGC 240 consensus_11456#1 ------------------------------------------------------------ consensus_11456#0 AGCAGGCGGGGTGGCCGGATCCGACGT-CAGCATCTGTTCCCGCGG-CGGATCCGCG--T 296 consensus_11456#1 --------------------CCGTCAAGCATCTTGTGTCCCCGCNGGCGGATCCGNCGTT 40 *** * ** * * *** ***** * ******** * consensus_11456#0 TGACAG--CGGGAATGG--TACAG--CGGCA-GCGTA-GGTGGGC-GCCCTCCT-CAGCA 346 consensus_11456#1 TGACAAGCCGGGAATTGGTTACAAGCCGGCATGCGTAAGGTGGGCCGCCCTCCTTCAGCA 100 ***** ******* * **** ***** ***** ******* ******** ***** consensus_11456#0 AG--CTACCGT-GGCAGCGGCGGG-CGCCATCCCCGGTGAGCTACGATAGCAGCGGGGCT 402 consensus_11456#1 AAGCTTACCGTTGGCANGCGCGNGGCGCCATCCCCGGTGAGCTACGATAGCANCGGGGCT 160 * ****** **** *** * *************************** ******* consensus_11456#0 CGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCG 462 consensus_11456#1 CGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTGAGCTACAGTGGCG 220 ************************************************************ consensus_11456#0 GGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTC 522 consensus_11456#1 GGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTC 280 ************************************************************ consensus_11456#0 TTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATG 582 consensus_11456#1 TTGCCTTGTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATG 340 ************************************************************ consensus_11456#0 TGTTGATTGTTTGGGGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA------ 636 consensus_11456#1 TGTTGATTGTTTGGGGATTATTCATTGTATTTCATGTATGCATGAGTTTGGGGGTTTGGA 400 ******************** * * * * * * consensus_11456#0 ------------------------- consensus_11456#1 GCTTGGGATCTAAAAAAAAAAAAAA 425 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||