These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11457#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 3648 fasta sequence [AGCCCCGGCACGGTCGTTCTCTCCCTCAGCTTCCGCCCTCCGCCGCCGCTCTATATCCCCCGCCTCCGTCCCCTCCCCTCCCCTCCCCGCCGGCGAGCCCTCGCCTTTCCTCCACGCGGCCAGCGCCTAGGTGCTGACGGTTGTTCGCCCCTGCTTCCGTGTGCTGCTGGTCTTGCTTCGCTTCGATTGGCGAGAGCATCATCCATGGCGGAGGCAAAAGGCAAACCGACGTCCACCAAGAAAGGCAGGAAGGCTGCGGCCAGCGCGGTGGCGGTGGGCGACGACATCGACTCGCTCAAGTCCGATGTCGCCTCCTTCGCCTCCTCACTCGGCTTCCTTGGTGCCGCCGCCGCCTCCTCCGGCTTCGACGATTCTGATTTCCGCAAGTCCGGCCCCATAATTCCTCCCAAAACCTCAAAATCCGCGCAAACCACCGACGCCCCCCCAAACCCTAAACCCACCACCACCACCACCAAGAAGCCACATCCTCTTGATATCCATGGCACCAATGCCACAACCAAATCAGTATCAGGTGCTGTCACCACCAATTACCCGCTGATGAAGGCAACGGCTCTGTCCGGGCAGTGGTACGCAGATGCTGGTGAGCTCGAGGCGAGCGTCCTCGGCGCTCGAAAGCAAGTCCTGCCTTCTGTGGGTCTCCAGGAGATGCAGAGGATCTCGGAGGGCAAGCGACAGCTGGCGGAGAAGCTTATGGCGCAGTACACGGTGGAATATGACATGGTGAAGCGGGGTAGCGGCGACCTGAAGCTTCTCGAGATATCGGCAAAGTCTGGCACATCTGCTGATAAGGTTTCAGCATTCACATGCCTTATCGAAGACAATCCAATTGCAAACATGAGGGCACTCGATTCTCTCCTTGGTATGGTTACATCAAAGGTTGGTAAAAGGTATGCGTTCACAGGGTTTGATGCATTGAAGGAGTTGTTCCTCAAAAGGGTATTACCTGATCGTAAGTTGAAAAGTCTTATTCAGCACCCATTAGATATTTTACCAGAAACAAAAGATGGCTACTCACTTCTCCTCTTCTGGTATTGGGAGGACTGCTTGAAACAGAGGTACGAGAAGTTTGTTATTGCATTGGAGGACGCATTAAAAGATATGCTGCCAAATCTTAAGGACAAAGCAATGAAGACGGTTTTTATCCTTTTAAAGGAAAAGGCAGAACAGGAACGCCGGTTACTTACAGCTCTTGTTAACAAACTTGGAGATCCTGAAAGGAGAGCAGCCTCAAGTGCGGCATATCTGTTAACAAGTCTCCTATCTGCTCATCCAAATATGAAGATGGTTGTGATAGATGAGGTGGACTCATTTCTCTTTCGGCCACATGTTGGTCTTAGGGCCAAATACCAAGCTGTCAACTTTTTGAGCCAGATTTTTCTTACCAGTAAGGGTGATGGCCCGAAAATAGCCAAGCGTTTGGTGGATGTTTACATTGCGCTTTTCAAGGTACTCATGTCTTGCTCTCGTGCTACTGAAGGAGTTAAACACAGCAAATATGGCAAGAAAACTAATGAAAATGGGAAAAAGGAAAAGGGCAATGACTTCAATTCTCATGTAAAGCATGAAGACCCTTGTGCAGGATCAGATTTAGAGATGGACTCTAGGATTCTCTCTGCACTTTTAACTGGGGTTAATAGAGCATTACCATATGTTGCAAGCTCAGAAGTTGATGATATTGTGGAAGTTCAGACACCAATTCTTTTTAGATTGGTGCACTCTGTAAATTTCAATGTTGGTGTACAGGCATTAATGCTTTTGTACCAAATATCTACAAAAAATCAGATCGCAAGCGACCGTTTTTACCGTGCACTGTATGCAAAACTTTTGAGTCCTGCATCCGTAACCTCGTCAAAGCCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGATGTCATGTTAAAGAGAGTGGCTGCATTTGCAAAGCGGTTGCTGCAGGTTGCTCTTCAGCGGCCTCCTCAATATGCTTGCGGATGCCTTTTCATACTGTCAGAGGTCCTTAAAGCAAAGCCACCATTGTGGGCAATTGTGCTCCAGAATGAATCTGTTGATGATGGTATTGAGCACTTTGAAGACATAGTAGAGAATACTGATTGTCCAGCTATTACCTCAAGAACTACAGATAAATGCAATGACATATTAGCTACTCTTGAGAAATGCAATTCAGATGCTGAGGATGCCTGTGATACTATAGAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAAAGGCACATCAGCTGAGGGGTTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCTTACTGTAATGCAGACCATGCCAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACTATGGCTAGGACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGACCTATCACTCCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAATGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGCTTGATCAAAGTCATCATCTCATTGGAGAAGAGCTACTAGAACTGGTAGAAAAGGAAGTTCCTCCTGAAGATGTTGTTTTCCATCGTTTCTACATGAACAAGACTGGCCCTATTAAACCTAAAGCAAAGAAGAAAACCGCGGTTCTGGATGAAGATACTGGAGAGCTCTTTGCTGATGATGTAGATGATGCTAGTGATGAAAGTGATGATGAAATGCAGGAGCTGGGAATTGGGTCGATAGAAGATGGAGAATATGATTATGATAATCTGGATGCAACCACATTTGAGGAGGAAGGGG-ATTTGC-TTA-GA-TATGA-CA-GTGAT--GTTGAGTTGCA-TGACATTTCAGATGATATCTCTTCTGGAGCAGATTCTGATACTGAAGCCCTTGAAGGTGCTAACCATTCAGATGGCAATGACAGTGATGGAGAGGAGCCA-GTCCAGGGGCAAAAGAGGAAACATGGTGCAAAGAGTGGAGCATCGCCATTTGCAAAACTAGAAGACTATGAACATCTCATGGATGGGGAAGCGGAAAAGCCAACGTTTAAGAAGGGGCGGAAGCACAGGGTAACCAGAGACAGCAAGGAGAAGAGAAAAGGTCTGAGCAGCAAGGAGAAATCAGGATCACGAAAGAAAAGGTCGAAGAGATCAGAATGAGATAAACA-TTTTTACCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCACCTTTTTCATTTGGACACGTTCCTGATGAATATTACACTAAGAAATCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTATCTCCCCTGTAATCTTCAGAACCTGAAGATGGACCAACCGGTTCCAGACTCTTCAGACA-GGTGGTATGGTGATAGTAGTGCGTGTGACCTGTTGATATGCTATATAATCCAAGAATATTTCGGCTTTTTCAATCGTCTCTCTTTGGTTCCTCTACCCCTTATGTTACGAGATACTATCTCTATTTTAAAATGTATAACGCTATTGCTTTTTTATTTAACTTTAACCATTTGTCTTTCTCAAAA] [+] EMBL AK101351 [AGCCCCGGCACGGTCGTTCTCTCCCTCAGCTTCCGCCCTCCGCCGCCGCTCTATATCCCCCGCCTCCGTCCCCTCCCCTCCCCTCCCCGCCGGCGAGCCCTCGCCTTTCCTCCACGCGGCCAGCGCCTAGGTGCTGACGGTTGTTCGCCCCTGCTTCCGTGTGCTGCTGGTCTTGCTTCGCTTCGATTGGCGAGAGCATCATCCATGGCGGAGGCAAAAGGCAAACCGACGTCCACCAAGAAAGGCAGGAAGGCTGCGGCCAGCGCGGTGGCGGTGGGCGACGACATCGACTCGCTCAAGTCCGATGTCGCCTCCTTCGCCTCCTCACTCGGCTTCCTTGGTGCCGCCGCCGCCTCCTCCGGCTTCGACGATTCTGATTTCCGCAAGTCCGGCCCCATAATTCCTCCCAAAACCTCAAAATCCGCGCAAACCACCGACGCCCCCCCAAACCCTAAACCCACCACCACCACCACCAAGAAGCCACATCCTCTTGATATCCATGGCACCAATGCCACAACCAAATCAGTATCAGGTGCTGTCACCACCAATTACCCGCTGATGAAGGCAACGGCTCTGTCCGGGCAGTGGTACGCAGATGCTGGTGAGCTCGAGGCGAGCGTCCTCGGCGCTCGAAAGCAAGTCCTGCCTTCTGTGGGTCTCCAGGAGATGCAGAGGATCTCGGAGGGCAAGCGACAGCTGGCGGAGAAGCTTATGGCGCAGTACACGGTGGAATATGACATGGTGAAGCGGGGTAGCGGCGACCTGAAGCTTCTCGAGATATCGGCAAAGTCTGGCACATCTGCTGATAAGGTTTCAGCATTCACATGCCTTATCGAAGACAATCCAATTGCAAACATGAGGGCACTCGATTCTCTCCTTGGTATGGTTACATCAAAGGTTGGTAAAAGGTATGCGTTCACAGGGTTTGATGCATTGAAGGAGTTGTTCCTCAAAAGGGTATTACCTGATCGTAAGTTGAAAAGTCTTATTCAGCACCCATTAGATATTTTACCAGAAACAAAAGATGGCTACTCACTTCTCCTCTTCTGGTATTGGGAGGACTGCTTGAAACAGAGGTACGAGAAGTTTGTTATTGCATTGGAGGACGCATTAAAAGATATGCTGCCAAATCTTAAGGACAAAGCAATGAAGACGGTTTTTATCCTTTTAAAGGAAAAGGCAGAACAGGAACGCCGGTTACTTACAGCTCTTGTTAACAAACTTGGAGATCCTGAAAGGAGAGCAGCCTCAAGTGCGGCATATCTGTTAACAAGTCTCCTATCTGCTCATCCAAATATGAAGATGGTTGTGATAGATGAGGTGGACTCATTTCTCTTTCGGCCACATGTTGGTCTTAGGGCCAAATACCAAGCTGTCAACTTTTTGAGCCAGATTTTTCTTACCAGTAAGGGTGATGGCCCGAAAATAGCCAAGCGTTTGGTGGATGTTTACATTGCGCTTTTCAAGGTACTCATGTCTTGCTCTCGTGCTACTGAAGGAGTTAAACACAGCAAATATGGCAAGAAAACTAATGAAAATGGGAAAAAGGAAAAGGGCAATGACTTCAATTCTCATGTAAAGCATGAAGACCCTTGTGCAGGATCAGATTTAGAGATGGACTCTAGGATTCTCTCTGCACTTTTAACTGGGGTTAATAGAGCATTACCATATGTTGCAAGCTCAGAAGTTGATGATATTGTGGAAGTTCAGACACCAATTCTTTTTAGATTGGTGCACTCTGTAAATTTCAATGTTGGTGTACAGGCATTAATGCTTTTGTACCAAATATCTACAAAAAATCAGATCGCAAGCGACCGTTTTTACCGTGCACTGTATGCAAAACTTTTGAGTCCTGCATCCGTAACCTCGTCAAAGCCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGATGTCATGTTAAAGAGAGTGGCTGCATTTGCAAAGCGGTTGCTGCAGGTTGCTCTTCAGCGGCCTCCTCAATATGCTTGCGGATGCCTTTTCATACTGTCAGAGGTCCTTAAAGCAAAGCCACCATTGTGGGCAATTGTGCTCCAGAATGAATCTGTTGATGATGGTATTGAGCACTTTGAAGACATAGTAGAGAATACTGATTGTCCAGCTATTACCTCAAGAACTACAGATAAATGCAATGACATATTAGCTACTCTTGAGAAATGCAATTCAGATGCTGAGGATGCCTGTGATACTATAGAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAAAGGCACATCAGCTGAGGGGTTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCTTACTGTAATGCAGACCATGCCAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACTATGGCTAGGACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGACCTATCACTCCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAATGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGCTTGATCAAAGTCATCATCTCATTGGAGAAGAGCTACTAGAACTGGTAGAAAAGGAAGTTCCTCCTGAAGATGTTGTTTTCCATCGTTTCTACATGAACAAGACTGGCCCTATTAAACCTAAAGCAAAGAAGAAAACCGCGGTTCTGGATGAAGATACTGGAGAGCTCTTTGCTGATGATGTAGATGATGCTAGTGATGAAAGTGATGATGAAATGCAGGAGCTGGGAATTGGGTCGATAGAAGATGGAGAATATGATTATGATAATCTGGATGCAACCACATTTGAGGAGGAAGGGG ATTTGC TTA GA TATGA CA GTGAT GTTGAGTTGCA TGACATTTCAGATGATATCTCTTCTGGAGCAGATTCTGATACTGAAGCCCTTGAAGGTGCTAACCATTCAGATGGCAATGACAGTGATGGAGAGGAGCCA GTCCAGGGGCAAAAGAGGAAACATGGTGCAAAGAGTGGAGCATCGCCATTTGCAAAACTAGAAGACTATGAACATCTCATGGATGGGGAAGCGGAAAAGCCAACGTTTAAGAAGGGGCGGAAGCACAGGGTAACCAGAGACAGCAAGGAGAAGAGAAAAGGTCTGAGCAGCAAGGAGAAATCAGGATCACGAAAGAAAAGGTCGAAGAGATCAGAATGAGATAAACA TTTTTACCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCACCTTTTTCATTTGGACACGTTCCTGATGAATATTACACTAAGAAATCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTATCTCCCCTGTAATCTTCAGAACCTGAAGATGGACCAAGGCGTTCCAGACTCTTCAGACA GGTGGTATGGTGATAGTAGTGCGTGTGGCCTGTTGATATGCTATATAATCCAAGAA ] [+] EMBL AK101139 [ AGTCTGGCACATCTGCTGATAAGGTTTCAGCATTCACATGCCTTATCGAAGACAATCCAATTGCAAACATGAGGGCACTCGATTCTCTCCTTGGTATGGTTACATCAAAGGTTGGTAAAAGGTATGCGTTCACAGGGTTTGATGCATTGAAGGAGTTGTTCCTCAAAAGGGTATTACCTGATCGTAAGTTGAAAAGTCTTATTCAGCACCCATTAGATATTTTACCAGAAACAAAAGATGGCTACTCACTTCTCCTCTTCTGGTATTGGGAGGACTGCTTGAAACAGAGGTACGAGAAGTTTGTTATTGCATTGGAGGACGCATTAAAAGATATGCTGCCAAATCTTAAGGACAAAGCAATGAAGACGGTTTTTATCCTTTTAAAGGAAAAGGCAGAACAGGAACGCCGGTTACTTACAGCTCTTGTTAACAAACTTGGAGATCCTGAAAGGAGAGCAGCCTCAAGTGCGGCATATCTGTTAACAAGTCTCCTATCTGCTCATCCAAATATGAAGATGGTTGTGATAGATGAGGTGGACTCATTTCTCTTTCGGCCACATGTTGGTCTTAGGGCCAAATACCAAGCTGTCAACTTTTTGAGCCAGATTTTTCTTACCAGTAAGGGTGATGGCCCGAAAATAGCCAAGCGTTTGGTGGATGTTTACATTGCGCTTTTCAAGGTACTCATGTCTTGCTCTCGTGCTACTGAAGGAGTTAAACACAGCAAATATGGCAAGAAAACTAATGAAAATGGGAAAAAGGAAAAGGGCAATGACTTCAATTCTCATGTAAAGCATGAAGACCCTTGTGCAGGATCAGATTTAGAGATGGACTCTAGGATTCTCTCTGCACTTTTAACTGGGGTTAATAGAGCATTACCATATGTTGCAAGCTCAGAAGTTGATGATATTGTGGAAGTTCAGACACCAATTCTTTTTAGATTGGTGCACTCTGTAAATTTCAATGTTGGTGTACAGGCATTAATGCTTTTGTACCAAATATCTACAAAAAATCAGATCGCAAGCGACCGTTTTTACCGTGCACTGTATGCAAAACTTTTGAGTCCTGCATCCGTAACCTCGTCAAAGCCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGATGTCATGTTAAAGAGAGTGGCTGCATTTGCAAAGCGGTTGCTGCAGGTTGCTCTTCAGCGGCCTCCTCAATATGCTTGCGGATGCCTTTTCATACTGTCAGAGGTCCTTAAAGCAAAGCCACCATTGTGGGCAATTGTGCTCCAGAATGAATCTGTTGATGATGGTATTGAGCACTTTGAAGACATAGTAGAGAATACTGATTGTCCAGCTATTACCTCAAGAACTACAGATAAATGCAATGACATATTAGCTACTCTTGAGAAATGCAATTCAGATGCTGAGGATGCCTGTGATACTATAGAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAAAGGCACATCAGCTGAGGGGTTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCTTACTGTAATGCAGACCATGCCAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACTATGGCTAGGACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGACCTATCACTCCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAATGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGCTTGATCAAAGTCATCATCTCATTGGAGAAGAGCTACTAGAACTGGTAGAAAAGGAAGTTCCTCCTGAAGATGTTGTTTTCCATCGTTTCTACATGAACAAGACTGGCCCTATTAAACCTAAAGCAAAGAAGAAAACCGCGGTTCTGGATGAAGATACTGGAGAGCTCTTTGCTGATGATGTAGATGATGCTAGTGATGAAAGTGATGATGAAATGCAGGAGCTGGGAATTGGGTCGATAGAAGATGGAGAATATGATTATGATAATCTGGATGCAACCACATTTGAGGAGGAAGGGG ATTTGC TTA GA TATGA CA GTGAT GTTGAGTTGCA TGACATTTCAGATGATATCTCTTCTGGAGCAGATTCTGATACTGAAGCCCTTGAAGGTGCTAACCATTCAGATGGCAATGACAGT ] [+] EMBL OSC106471 [ CTTTCGGCCACATGTTGGTCTTAGGGCCAAATACCAAGCTGTCAACTTTTTGAGCCAGATTTTTCTTACCAGTAAGGGTGATGGCCCGAAAATAGCCAAGCGTTTGGTGGATGTTTACATTGCGCTTTTCAAGGTACTCATGTCTTGCTCTCGTGCTACTGAAGGAGTTAAACACAGCAAATATGGCAAGAAAACTAATGAAAATGGGAAAAAGGAAAAGGGCAATGACTTCAATTCTCATGTAAAGCATGAAGACCCTTGTGCAGGATCAGATTTAGAGATGGACTCTAGGATTCTCTCTGCACTTTTAACTGGGGTTAATAGAGCATTA CATATGTTGCAAGCTCAGAAGTTGAT ] [+] EMBL CB646054 [ nCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGATGTCATGTTACAGAGAGTGGCTGCATTTGCAAAGCGGTTGCTGCAGGTTGCTCTTCAGCGGCCTCCTCAATATGCTTGCGGATGCCTTTTCATACTGTCAGAGGTCCTTAAAGCAAAGCCACCATTGTGGGCAATTGTGCTCCAGAATGAATCTGTTGATGATGGTATTGAGCACTTTGAAGACATAGTAGAGAATACTGATTGTCCAGCTATTACCTCAAGAACTACAGATAAATGCAATGACATATTAGCTACTCTTGAGAAATGCAATTCAGATGCTGAGGATGCCTGTGATACTATAGAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAAAGGCACATCAGCTGAGGGGTTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCTTACTGTAATGCAGACCATGCCAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACTATGGCTAGGACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGACCTATCACTCCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATCGCTGAAGGGAAATGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGCTTGATCAAAGTCATC ] [+] EMBL BM038621 [ AGGAGGAAGGGGNATTTGCTTTATGATTATGACCACGTGATTGGTTGAGTTGCACTGACATTTCAGATGATATCTCTTCTGGACCAGATTCTGATACTGAAGCCCTTGAAGGTGCTAACCATTCAGATGGCAATGACAGTGATGGAGAGGAGCCACGTCCAGGGGC AAAGAGGAAACATGGTGCAAAGAGTGGAGCATCGCCATTTGCAAAACTAGAAGACTATGAACATCTCATGGATGGGGAAGCGGAAAAGCC ACGTTTAAGAAGGGGCGGAAGCACAGGGTAACCAGAGACAGCAAGGAGAAGAGAAAAGGTCTGAGCAGCCAGGAGAAATCAGGATCACGAAAGAAAAGGTCGAAGAGATCAGAATGAGATAAACACTTTTTACCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCACCTTTTTCATTTGGACACGTTCCTGATGAATATTACACTAAGAAATCACTTGGAGATTAGGGACAaaaa ] [+] EMBL BM418626 [ CCGGTTCCAGACTCTTCAGACACGGTGGTATGGTGATAGTAGTGCGTGTGACCTGTTGATATGCTATATAATCCAAGAATATTTCGGCTTTTTCAATCGTCTCTCTTTGGTTCCTCTACCCCTTATGTTACGAGATACTATCTCTATTTTAAAATGTATAACGCTATTGCTTTTTTATTTAACTTTAACCATTTGTCTTTCTCAAAA] [+] EMBL BM419840 [ CCGGTTCCAGACTCTTCAGACA GGTGGTATGGTGATAGTAGTGCGTGTGACCTGTTGATATGCTATATAATCCAAGAATATTTCGGCTTTTTCAATCGTCTCTCTTTGGTTCCTCTACCCCTTATGTTACGAGATACTATCTCTATTTTAAAATGTATAACGCTATTGCTTTTTTATTTAACTTTAACCATTTGTCTTTCTCAAAA] consensusID : consensus_11457#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence [AAGAAAAGGTCGAAGAGATCAGAATGAGATAAACATTTTTNCCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCNCCTTTTTNATTTGGNCACGTTCCTGATGAATATTNCACTAAGAAATCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C96755 [AAGAAAAGGTCGAAGAGATCAGAATGAGATAAACATTTTTNCCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCNCCTTTTTNATTTGGNCACGTTCCTGATGAATATTNCACTAAGAAATCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_11457#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 140 fasta sequence [CTCCCTATGCTCCCCGTGTAATCTTCAGAACCTGAAGACCGGACCCAGGCGTTCCAGACCTCTTCAGAACACGGTGGTATGGTGATAGTAGTGCCGTGTGACCTGTTGATATGCTATATAATCCACAGAATATTTCGGCT] [+] EMBL BI803093 [CTCCCTATGCTCCCCGTGTAATCTTCAGAACCTGAAGACCGGACCCAGGCGTTCCAGACCTCTTCAGAACACGGTGGTATGGTGATAGTAGTGCCGTGTGACCTGTTGATATGCTATATAATCCACAGAATATTTCGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11457#0 AGCCCCGGCACGGTCGTTCTCTCCCTCAGCTTCCGCCCTCCGCCGCCGCTCTATATCCCC 60 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CGCCTCCGTCCCCTCCCCTCCCCTCCCCGCCGGCGAGCCCTCGCCTTTCCTCCACGCGGC 120 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CAGCGCCTAGGTGCTGACGGTTGTTCGCCCCTGCTTCCGTGTGCTGCTGGTCTTGCTTCG 180 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CTTCGATTGGCGAGAGCATCATCCATGGCGGAGGCAAAAGGCAAACCGACGTCCACCAAG 240 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AAAGGCAGGAAGGCTGCGGCCAGCGCGGTGGCGGTGGGCGACGACATCGACTCGCTCAAG 300 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCCGATGTCGCCTCCTTCGCCTCCTCACTCGGCTTCCTTGGTGCCGCCGCCGCCTCCTCC 360 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GGCTTCGACGATTCTGATTTCCGCAAGTCCGGCCCCATAATTCCTCCCAAAACCTCAAAA 420 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCCGCGCAAACCACCGACGCCCCCCCAAACCCTAAACCCACCACCACCACCACCAAGAAG 480 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CCACATCCTCTTGATATCCATGGCACCAATGCCACAACCAAATCAGTATCAGGTGCTGTC 540 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 ACCACCAATTACCCGCTGATGAAGGCAACGGCTCTGTCCGGGCAGTGGTACGCAGATGCT 600 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GGTGAGCTCGAGGCGAGCGTCCTCGGCGCTCGAAAGCAAGTCCTGCCTTCTGTGGGTCTC 660 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CAGGAGATGCAGAGGATCTCGGAGGGCAAGCGACAGCTGGCGGAGAAGCTTATGGCGCAG 720 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TACACGGTGGAATATGACATGGTGAAGCGGGGTAGCGGCGACCTGAAGCTTCTCGAGATA 780 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCGGCAAAGTCTGGCACATCTGCTGATAAGGTTTCAGCATTCACATGCCTTATCGAAGAC 840 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AATCCAATTGCAAACATGAGGGCACTCGATTCTCTCCTTGGTATGGTTACATCAAAGGTT 900 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GGTAAAAGGTATGCGTTCACAGGGTTTGATGCATTGAAGGAGTTGTTCCTCAAAAGGGTA 960 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TTACCTGATCGTAAGTTGAAAAGTCTTATTCAGCACCCATTAGATATTTTACCAGAAACA 1020 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AAAGATGGCTACTCACTTCTCCTCTTCTGGTATTGGGAGGACTGCTTGAAACAGAGGTAC 1080 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GAGAAGTTTGTTATTGCATTGGAGGACGCATTAAAAGATATGCTGCCAAATCTTAAGGAC 1140 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AAAGCAATGAAGACGGTTTTTATCCTTTTAAAGGAAAAGGCAGAACAGGAACGCCGGTTA 1200 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CTTACAGCTCTTGTTAACAAACTTGGAGATCCTGAAAGGAGAGCAGCCTCAAGTGCGGCA 1260 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TATCTGTTAACAAGTCTCCTATCTGCTCATCCAAATATGAAGATGGTTGTGATAGATGAG 1320 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTGGACTCATTTCTCTTTCGGCCACATGTTGGTCTTAGGGCCAAATACCAAGCTGTCAAC 1380 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TTTTTGAGCCAGATTTTTCTTACCAGTAAGGGTGATGGCCCGAAAATAGCCAAGCGTTTG 1440 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTGGATGTTTACATTGCGCTTTTCAAGGTACTCATGTCTTGCTCTCGTGCTACTGAAGGA 1500 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTTAAACACAGCAAATATGGCAAGAAAACTAATGAAAATGGGAAAAAGGAAAAGGGCAAT 1560 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GACTTCAATTCTCATGTAAAGCATGAAGACCCTTGTGCAGGATCAGATTTAGAGATGGAC 1620 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCTAGGATTCTCTCTGCACTTTTAACTGGGGTTAATAGAGCATTACCATATGTTGCAAGC 1680 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCAGAAGTTGATGATATTGTGGAAGTTCAGACACCAATTCTTTTTAGATTGGTGCACTCT 1740 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTAAATTTCAATGTTGGTGTACAGGCATTAATGCTTTTGTACCAAATATCTACAAAAAAT 1800 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CAGATCGCAAGCGACCGTTTTTACCGTGCACTGTATGCAAAACTTTTGAGTCCTGCATCC 1860 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTAACCTCGTCAAAGCCAGAATTATTTCTTGGTTTATTGGTGAAAGCAATGAAAAATGAT 1920 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTCATGTTAAAGAGAGTGGCTGCATTTGCAAAGCGGTTGCTGCAGGTTGCTCTTCAGCGG 1980 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CCTCCTCAATATGCTTGCGGATGCCTTTTCATACTGTCAGAGGTCCTTAAAGCAAAGCCA 2040 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CCATTGTGGGCAATTGTGCTCCAGAATGAATCTGTTGATGATGGTATTGAGCACTTTGAA 2100 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GACATAGTAGAGAATACTGATTGTCCAGCTATTACCTCAAGAACTACAGATAAATGCAAT 2160 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GACATATTAGCTACTCTTGAGAAATGCAATTCAGATGCTGAGGATGCCTGTGATACTATA 2220 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GAATGTGTAAGTCCAATCTCAAGTGGTGAGAAAGATGGAAAAGGCACATCAGCTGAGGGG 2280 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TTGACACTTCAGGCATCTTATAATCCACGACACAGAGAGCCTTCTTACTGTAATGCAGAC 2340 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CATGCCAGTTGGTGGGAGCTTACTGCACTGGCCTTACATGTGCACCCATCGGTATCTACT 2400 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 ATGGCTAGGACATTGCTATCTGGTAACAATATCGTTTATAGTGGTGATCCATTGACAGAC 2460 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CTATCACTCCCTGCTTTCCTTGACAAATTCATGGAGAAGAAACCAAAAGGAAACCGCATC 2520 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GCTGAAGGGAAATGGCATGGTGGATCCCAAATTGCACCAGCTAAAAAGCTTGATCAAAGT 2580 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CATCATCTCATTGGAGAAGAGCTACTAGAACTGGTAGAAAAGGAAGTTCCTCCTGAAGAT 2640 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTTGTTTTCCATCGTTTCTACATGAACAAGACTGGCCCTATTAAACCTAAAGCAAAGAAG 2700 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AAAACCGCGGTTCTGGATGAAGATACTGGAGAGCTCTTTGCTGATGATGTAGATGATGCT 2760 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AGTGATGAAAGTGATGATGAAATGCAGGAGCTGGGAATTGGGTCGATAGAAGATGGAGAA 2820 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TATGATTATGATAATCTGGATGCAACCACATTTGAGGAGGAAGGGGATTTGCTTAGATAT 2880 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GACAGTGATGTTGAGTTGCATGACATTTCAGATGATATCTCTTCTGGAGCAGATTCTGAT 2940 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 ACTGAAGCCCTTGAAGGTGCTAACCATTCAGATGGCAATGACAGTGATGGAGAGGAGCCA 3000 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GTCCAGGGGCAAAAGAGGAAACATGGTGCAAAGAGTGGAGCATCGCCATTTGCAAAACTA 3060 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 GAAGACTATGAACATCTCATGGATGGGGAAGCGGAAAAGCCAACGTTTAAGAAGGGGCGG 3120 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 AAGCACAGGGTAACCAGAGACAGCAAGGAGAAGAGAAAAGGTCTGAGCAGCAAGGAGAAA 3180 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TCAGGATCACGAAAGAAAAGGTCGAAGAGATCAGAATGAGATAAACATTTTTACCATTTT 3240 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CATGTTTATCGTAATCGCAATGATGGTTATGAAATTTTTGTAGCTTATAGTTTCGGTGTT 3300 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 TGTATCCTTCGCCCACCTTTTTCATTTGGACACGTTCCTGATGAATATTACACTAAGAAA 3360 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 -----------------------------------AAGAAAAGGTCGAAGAGATCAGAAT 25 consensus_11457#0 TCACTTGGAGATTAGGGACAGATCAACGGGGCTGGCTTCTCCCTATCTCCCCTGTAATCT 3420 consensus_11457#2 ------------------------------------CTCCCTATGCTCCCCGTGTAATCT 24 consensus_11457#1 GAGATAAACATTTTTNCCATTTTCATGTTTATCGTAATCGCAATGATGGTTATGAAATTT 85 ** * * ** *** * consensus_11457#0 TCAGAACCTGAAGAT-GGACCAACCGGTTC-----CAGAC-TCTTCA---GA-CA-GGTG 3468 consensus_11457#2 TCAGAACCTGAAGACCGGACCCAGGCGTTC-----CAGACCTCTTCA---GAACACGGTG 76 consensus_11457#1 TTGTAGCTTATAGTTTCGGTGTTTGTATCCTTCGCCCNCCTTTTTNATTTGGNCACGTTC 145 * * * * ** * * * * * * ** * * ** * * consensus_11457#0 GT-ATGGTGATAGTAGTGC-GTGTGACCTGTTGATATGCTATATAATCCA-AGAAT--AT 3523 consensus_11457#2 GT-ATGGTGATAGTAGTGCCGTGTGACCTGTTGATATGCTATATAATCCACAGAAT--AT 133 consensus_11457#1 CTGATGAATATTNCACTAAGAAATCACTTGGAGATTAGGGACA-GATCAACGGGGCTGGC 204 * *** ** * * * ** ** *** * * * *** * * consensus_11457#0 TTCGGCTTTTTCAATCGTCTCTCTTTGGTTCCTCTACCCCTTATGTTACGAGATACTATC 3583 consensus_11457#2 TTCGGCT----------------------------------------------------- 140 consensus_11457#1 TTCTCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 259 *** * consensus_11457#0 TCTATTTTAAAATGTATAACGCTATTGCTTTTTTATTTAACTTTAACCATTTGTCTTTCT 3643 consensus_11457#2 ------------------------------------------------------------ consensus_11457#1 ------------------------------------------------------------ consensus_11457#0 CAAAA 3648 consensus_11457#2 ----- consensus_11457#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||