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Oryza sativa
cluster # 11458 cluster # 11458       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11458#0 length = 1822 sequences # 7  
consensus_11458#1 length = 550 sequences # 1  
consensus_11458#2 length = 203 sequences # 1  

consensusID : consensus_11458#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1822
fasta sequence
                              [CCGATCGCCATTTCTCCACCTGCACATCTGCGCGCGCGCGCGGGAGAGCAGAGGCGGCGAGAGAGATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCACCGGCCCTCTGTCGCGGCGGCACGCGGGGGAGGGAACGGTGGGGCGATCCCGCTCCTGCGTGGGTGGCAGGCGTTCCGGAGGAGCGGCGCGCCGGCGAGGCTCCTCTGCTTCGAGGGCGGCGCGTGGGCGGACGTCGCGGGCGAGGTGGTGGGGCTGCTGCGGCGGGCGTTCATGGAGGGGAAGGCCGTTTGCGAGGCCGCCTGCGGTGGGAGGGTGTTCCTGTTCGACTTCATGCGGATGGTTCGGATCGATGAGGCCACCGCCGAGGAGGCCGCGCTGGGGTGGATCGACGACCGCGGCGCGTGCTTCTTCCCGGCTCCCGAGGGCGGGAGGAAGAGGAAGAGGGAGAGGGACGCGGGGTCGGAGGTGAAGGGGGAGGATCGGCGGCGGCGGCAGCCGGCGGCGGAGGAGGAGGACGGGGACGAGGCGTCGTCCGGCGTGGAGGAGCGGTCCGGGGAGAGCCGCCCCGAGGCGGATGAGCCCGACAGGAAGAAGGCGCGCGGGACGTTGTGGGGGAAGGCGGTGAGGCTGGACGAGGCGGACAAGTTCTACAAGGTGGTGGAGAAGCTCTTCGTCAGCCGGATGGCTCCCGTGGCGGCGGCCCGCGGCGTGGCGATCACGGCGGTGCACAAGGTCGCGCAGGGGCCCCGGGCAAGAGCCTTCCATCTGCAGGGACAGCTCCTTGCCGCTGCTCGCGGCGTCGGCGATGGCAGCAACGCCAAGTTCGCGTGGTACGGCGCGCCGGCGGCGGATGTGGCCGCGGCGGTGGAGCACGGCTTCGGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCGCCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCACACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCCCAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGGTGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTCGGGAGTTTAAAAAAAAAAAAAA]

[+] EMBL AK102303             [CCGATCGCCATTTCTCCACCTGCACATCTGCGCGCGCGCGCGGGAGAGCAGAGGCGGCGAGAGAGATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCACCGGCCCTCTGTCGCGGCGGCACGCGGGGGAGGGAACGGTGGGGCGATCCCGCTCCTGCGTGGGTGGCAGGCGTTCCGGAGGAGCGGCGCGCCGGCGAGGCTCCTCTGCTTCGAGGGCGGCGCGTGGGCGGACGTCGCGGGCGAGGTGGTGGGGCTGCTGCGGCGGGCGTTCATGGAGGGGAAGGCCGTTTGCGAGGCCGCCTGCGGTGGGAGGGTGTTCCTGTTCGACTTCATGCGGATGGTTCGGATCGATGAGGCCACCGCCGAGGAGGCCGCGCTGGGGTGGATCGACGACCGCGGCGCGTGCTTCTTCCCGGCTCCCGAGGGCGGGAGGAAGAGGAAGAGGGAGAGGGACGCGGGGTCGGAGGTGAAGGGGGAGGATCGGCGGCGGCGGCAGCCGGCGGCGGAGGAGGAGGACGGGGACGAGGCGTCGTCCGGCGTGGAGGAGCGGTCCGGGGAGAGCCGCCCCGAGGCGGATGAGCCCGACAGGAAGAAGGCGCGCGGGACGTTGTGGGGGAAGGCGGTGAGGCTGGACGAGGCGGACAAGTTCTACAAGGTGGTGGAGAAGCTCTTCGTCAGCCGGATGGCTCCCGTGGCGGCGGCCCGCGGCGTGGCGATCACGGCGGTGCACAAGGTCGCGCAGGGGCCCCGGGCAAGAGCCTTCCATCTGCAGGGACAGCTCCTTGCCGCTGCTCGCGGCGTCGGCGATGGCAGCAACGCCAAGTTCGCGTGGTACGGCGCGCCGGCGGCGGATGTGGCCGCGGCGGTGGAGCACGGCTTCGGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCGCCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCACACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCCCAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGGTGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTCGG                    ]
[+] EMBL CB647225             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTCCTTGCCGCTGCTCGCGGCGTCGGCGATGGCAGCAACGCCAAGTTCGCGTGGTACGGCGCGCCGGCGGCGGATGTGGCCGCGGCGGTGGAGCACGGCTTCGGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCGCCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCACACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCCCAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGGTGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGGTTt                                                                                                                                                                                        ]
[+] EMBL CF320898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGCACGGCTTCGGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCGCCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCACACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCCCAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGGTGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCGGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGT                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB647226             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCCCAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGGTGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGATTCTGTTGAGGTTTTGATTCAGGAAACAATCAATTCAGTTTCGGG                   ]
[-] EMBL CF320899             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTCGGGAGTTTAAAAAAAAAAAAAA]
[+] EMBL CF331174             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGTTTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTCGG                    ]
[+] EMBL AK058934             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTGTAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTCGGGAGTTTA             ]


>consensus_11458#0 CCGATCGCCATTTCTCCACCTGCACATCTGCGCGCGCGCGCGGGAGAGCAGAGGCGGCGA GAGAGATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCAC CGGCCCTCTGTCGCGGCGGCACGCGGGGGAGGGAACGGTGGGGCGATCCCGCTCCTGCGT GGGTGGCAGGCGTTCCGGAGGAGCGGCGCGCCGGCGAGGCTCCTCTGCTTCGAGGGCGGC GCGTGGGCGGACGTCGCGGGCGAGGTGGTGGGGCTGCTGCGGCGGGCGTTCATGGAGGGG AAGGCCGTTTGCGAGGCCGCCTGCGGTGGGAGGGTGTTCCTGTTCGACTTCATGCGGATG GTTCGGATCGATGAGGCCACCGCCGAGGAGGCCGCGCTGGGGTGGATCGACGACCGCGGC GCGTGCTTCTTCCCGGCTCCCGAGGGCGGGAGGAAGAGGAAGAGGGAGAGGGACGCGGGG TCGGAGGTGAAGGGGGAGGATCGGCGGCGGCGGCAGCCGGCGGCGGAGGAGGAGGACGGG GACGAGGCGTCGTCCGGCGTGGAGGAGCGGTCCGGGGAGAGCCGCCCCGAGGCGGATGAG CCCGACAGGAAGAAGGCGCGCGGGACGTTGTGGGGGAAGGCGGTGAGGCTGGACGAGGCG GACAAGTTCTACAAGGTGGTGGAGAAGCTCTTCGTCAGCCGGATGGCTCCCGTGGCGGCG GCCCGCGGCGTGGCGATCACGGCGGTGCACAAGGTCGCGCAGGGGCCCCGGGCAAGAGCC TTCCATCTGCAGGGACAGCTCCTTGCCGCTGCTCGCGGCGTCGGCGATGGCAGCAACGCC AAGTTCGCGTGGTACGGCGCGCCGGCGGCGGATGTGGCCGCGGCGGTGGAGCACGGCTTC GGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCG CCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCA CACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCC CAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGG TGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGC TTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAG AAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGG TTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGA CAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTG ACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCC GTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGAC AGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCAT GAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGAT ATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTG TAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTC GGGAGTTTAAAAAAAAAAAAAA



consensusID : consensus_11458#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 550
fasta sequence
                              [CATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTNCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAAAAAAAAAAAAAAAAA]

[+] EMBL AU092138             [CATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTNCACTCCGTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAAAAAAAAAAAAAAAAA]


>consensus_11458#1 CATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGCTTCAGGTGGCCCAACCTGCCGCA GATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAGAAGCCATCACCAGCAGCTACTCG CGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCA GACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGACAGATGAAGAAGGACCAGTTCAT CCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGTGGCCAAGAAACTCCG AGGGTACTAGTGCAAGGTGCAAATTTGTCTNCACTCCGTGGCTGAATTCGACTAACTCCG TAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCT GCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCATGAACATAGAGGGGGTTTACTGTG ATCTTCCAATTAACCAACACAAAAGGGTATATGTGATATGATGCAAATTATGCAAAAAAA AAAAAAAAAA



consensusID : consensus_11458#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 203
fasta sequence
                              [CCGCNATCGCCAGTTTCTCCACCTGCACATCTGCGCGCGCGCNGGNGAGGAGCAGAGGCGGCGAGAGANATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCACCGGCCCTCTGTCGCGGCGGCACGGGNGTGTNAGGGAACGGTGGGGCGATCCCGCTTCCTGCGTTGGNGTTGGGCAGGGC]

[+] EMBL OSC109501            [CCGCNATCGCCAGTTTCTCCACCTGCACATCTGCGCGCGCGCNGGNGAGGAGCAGAGGCGGCGAGAGANATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCACCGGCCCTCTGTCGCGGCGGCACGGGNGTGTNAGGGAACGGTGGGGCGATCCCGCTTCCTGCGTTGGNGTTGGGCAGGGC]


>consensus_11458#2 CCGCNATCGCCAGTTTCTCCACCTGCACATCTGCGCGCGCGCNGGNGAGGAGCAGAGGCG GCGAGAGANATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGAT CCACCGGCCCTCTGTCGCGGCGGCACGGGNGTGTNAGGGAACGGTGGGGCGATCCCGCTT CCTGCGTTGGNGTTGGGCAGGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11458#0      CCGATCGCCATTTCTCCACCTGCACATCTGCGCGCGCGCGCGGGAGAGCAGAGGCGGCGA 60
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GAGAGATCCGGGTCGGGAGGGGTGATGGACTTCTCCGGCGACGTCAAGCCGGCGATCCAC 120
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      CGGCCCTCTGTCGCGGCGGCACGCGGGGGAGGGAACGGTGGGGCGATCCCGCTCCTGCGT 180
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GGGTGGCAGGCGTTCCGGAGGAGCGGCGCGCCGGCGAGGCTCCTCTGCTTCGAGGGCGGC 240
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GCGTGGGCGGACGTCGCGGGCGAGGTGGTGGGGCTGCTGCGGCGGGCGTTCATGGAGGGG 300
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      AAGGCCGTTTGCGAGGCCGCCTGCGGTGGGAGGGTGTTCCTGTTCGACTTCATGCGGATG 360
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GTTCGGATCGATGAGGCCACCGCCGAGGAGGCCGCGCTGGGGTGGATCGACGACCGCGGC 420
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GCGTGCTTCTTCCCGGCTCCCGAGGGCGGGAGGAAGAGGAAGAGGGAGAGGGACGCGGGG 480
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      TCGGAGGTGAAGGGGGAGGATCGGCGGCGGCGGCAGCCGGCGGCGGAGGAGGAGGACGGG 540
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GACGAGGCGTCGTCCGGCGTGGAGGAGCGGTCCGGGGAGAGCCGCCCCGAGGCGGATGAG 600
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      CCCGACAGGAAGAAGGCGCGCGGGACGTTGTGGGGGAAGGCGGTGAGGCTGGACGAGGCG 660
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GACAAGTTCTACAAGGTGGTGGAGAAGCTCTTCGTCAGCCGGATGGCTCCCGTGGCGGCG 720
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GCCCGCGGCGTGGCGATCACGGCGGTGCACAAGGTCGCGCAGGGGCCCCGGGCAAGAGCC 780
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      TTCCATCTGCAGGGACAGCTCCTTGCCGCTGCTCGCGGCGTCGGCGATGGCAGCAACGCC 840
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      AAGTTCGCGTGGTACGGCGCGCCGGCGGCGGATGTGGCCGCGGCGGTGGAGCACGGCTTC 900
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GGGAGGACGAACGGGCAGTTTCTCGGCGGGCGCGCACACGGCGACGGCGTTCACCTTTCG 960
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      CCGCCGCAGTACCCTCACGCTAGTGCGATGCTGACCAAGCCAGACGAGAATGGCGAGGCA 1020
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      CACATCGTGCTGTGCCGCGTCCTGATGGGCCGTCCAGAGGCCGTCCCTGCCAGCTCACCC 1080
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      CAATTCCACCCCAGCAGCGACGAATACGACAGCGCCGTCGACAACCTTGAGAATCCGCGG 1140
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      TGGTACGTTGTATGGAGCACAGACATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGC 1200
consensus_11458#1      -----------------------CATGAACACCAGGATCCTCCCAGAGTACGTGGTCAGC 37
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      TTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAG 1260
consensus_11458#1      TTCAGGTGGCCCAACCTGCCGCAGATGGAAGGATCATCGGGGTTGGGATCGAAGCTGAAG 97
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      AAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGG 1320
consensus_11458#1      AAGCCATCACCAGCAGCTACTCGCGACATGTTCCCTATGCTTCTGACGGAGATCCAGCGG 157
consensus_11458#2      ----------------------------------------------CCGCNATC--GCCA 12
                                                                     * *  ***  **  

consensus_11458#0      TTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGA 1380
consensus_11458#1      TTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGCTTCAAGAGAGGA 217
consensus_11458#2      GTTTCTCCACCTGCACATCTGCGCGCGC-GCNGGNGAGGAGCAGAGGCGGCGAGAGANAT 71
                        *   **** *  *  * ****   *   ** *  ** *  **   **  * *****   

consensus_11458#0      CAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTG 1440
consensus_11458#1      CAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTG 277
consensus_11458#2      CCGGGTCGGGAGGGGTGATGGACTT--CTCCGGCGACGTCAAGCCGGCGA---TCCACCG 126
                       * *     * ***     *  *      **  ***    **   ******   *     *

consensus_11458#0      ACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCC 1500
consensus_11458#1      ACCACCGTGGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTNCACTCC 337
consensus_11458#2      GC--CCTCTGTCGCGGCGGCACGGGNGTGTNAGGGAACGGTG-GGGCGATCCCGCTTCCT 183
                        *  **   * *  *      ** * **   ** * * ****         *  *   * 

consensus_11458#0      GTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGAC 1560
consensus_11458#1      GTGGCTGAATTCGACTAACTCCGTAGAATCGAACAGTGCGTGTCGTGTACCAATCCTGAC 397
consensus_11458#2      GCGTTGGNGTTGGGCAGGGC---------------------------------------- 203
                       * *   *  ** * *                                             

consensus_11458#0      AGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCAT 1620
consensus_11458#1      AGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAATGTTTATTGTCAT 457
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGAT 1680
consensus_11458#1      GAACATAGAGGGGGTTTACTGTGATCTTCCAATTAACCAACACAAAAGGGTATATGTGAT 517
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      ATGATGCAAATTATGCAATTCTTGAGTTCGGTCATAGTTTTACTTATTTTCAGCAACTTG 1740
consensus_11458#1      ATGATGCAAATTATGCAAAAAAAAAAAAAAAAA--------------------------- 550
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      TAATTTGTACAGACTCGATTCTGTTGAGCTTTTGATTCAGGAAACAATCAATTCAGTTTC 1800
consensus_11458#1      ------------------------------------------------------------
consensus_11458#2      ------------------------------------------------------------
                                                                                   

consensus_11458#0      GGGAGTTTAAAAAAAAAAAAAA 1822
consensus_11458#1      ----------------------
consensus_11458#2      ----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)