cluster # 11464

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Oryza sativa
cluster # 11464 cluster # 11464 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11464#0 length = 674 sequences # 7

consensus_11464#1 length = 454 sequences # 1
consensus_11464#2 length = 206 sequences # 1

consensusID : consensus_11464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 674
fasta sequence

                              [TCGTTTTTGCGGCGGCGCCCCCGAGCGAAGCAGCCGAGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA-AGCTCCTGCGCCGCCTCAGCCGGGA-GCAGAAGGA-GGCTGTGATGGCCA-AGGCG-CTGGAGAAC-AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA-AAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAA-AGGACAAAGTTGACG-CCATGGTGGAGTGA-CTGGATGTGGTTGATAACACTCAGCTTCTACA-TTGTTGAAGGGATCCG-CAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGTTAAATGCATGGTTTTTGGAATATTTGTATGAAAGCCTGATTTGCATG]

[+] EMBL AK121756             [TCGTTTTTGCGGCGGCGCCCCCGAGCGAAGCAGCCGAGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA AAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAA AGGACAAAGTTGACG CCATGGTGGAGTGA CTGGATGTGGTTGATAACACTCAGCTTCTACA TTGTTGAAGGGATCCG CAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGTTAAATGCATGGTTTTTGGAATATTTGTATGAAAGCCTGATTTGCATG]
[+] EMBL AU069278             [                   CCCGAGCGAAG AGCCGAGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGANTNGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGNCCGTTTCCGTCTCCGGCAAGCGCCA CGNANAG TCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCG                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA753290             [                      GAGCGAAGCAGCCGAGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA AAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAA AGGACAAAGTTGACG CCATGGTGGAGTGA CTGGATGTGGTNGATAACACTCAGCTTCTACA TTGTTGAAGGGATCCG CAAGGATTGAAAATACCATGAGCTATCAAAGCATCTNTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCCTTCTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGGTAAATGCATGG TTTGGGATTA TGGTAT                  ]
[+] EMBL CB683167             [                           AAGCACCCGAGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA AAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAA AGGACAAAGTTGACG CCATGGTGGAGTGA CTGGATGTGGTTGATAACACTCAGCTTCTACA TTGTTGAAGGGATCCG CAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGTTAAATGCATGGTTTTTGGAA                           ]
[+] EMBL CA999163             [                                    AGCACCCACCCGCCGCCGCCGCCGTCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA AAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAA AGGACAAAGTTGACG CCATGGTGGAGTGA CTGGATGTGGTTGATAACACTCAGCTTCTACA TTGTTGAAGGGATCCG CAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACTAAATAC                                                                    ]
[+] EMBL AU082212             [                                                                     CATGGCCAAGTTCAACGTGGTGCANAAGAACAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGA GCAGAAGGA GGCTGTGATGGCCA AGGCG CTGGAGAAC AACATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCA AAAa                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM419298             [                                                                                                                                                  CCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCGCA AGCTCCTGCGCCGCCTCAGCCGGGATGCAGAAGGATGGCTGTGATGGCCANAGGCGCCTGGAGAACNACCATGGGCGACGTCGAGATGGTATCTGCGGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCACAAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAATAGGAC AAGTTGACGCCCATGGTGGAGTGACCTGGATGTGGTTGATAACACTCAGCTTCTACACTTGTTGAAGGGATCCGCCAAGGATTGAAAATACCATGAGCTATCAAAGCATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACTAAATACGATGATCAAGACCTGAGAGGTTAAATGCCCGNCTTTTGGAATATTTGTATGAAAaaaaaa        ]




>consensus_11464#0
TCGTTTTTGCGGCGGCGCCCCCGAGCGAAGCAGCCGAGCACCCACCCGCCGCCGCCGCCG
TCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGA
CCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCC
CGTCTCCGTCTCCGGCAAGCGCCAGCGCAAGCTCCTGCGCCGCCTCAGCCGGGAGCAGAA
GGAGGCTGTGATGGCCAAGGCGCTGGAGAACAACATGGGCGACGTCGAGATGGTATCTGC
GGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAA
CTCAAGAGTACAGATCAAAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAA
GCCGCCGACAAAGGACAAAGTTGACGCCATGGTGGAGTGACTGGATGTGGTTGATAACAC
TCAGCTTCTACATTGTTGAAGGGATCCGCAAGGATTGAAAATACCATGAGCTATCAAAGC
ATCTTTACTGTCTTAATGTTTAGTACAAGCTAGTTAGCTTTCTAATCAATGTATCCTACT
AAATACGATGATCAAGACCTGAGAGGTTAAATGCATGGTTTTTGGAATATTTGTATGAAA
GCCTGATTTGCATG

consensusID : consensus_11464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence

                              [CNNAANGGGACAAAANNNTGGATNNNCACCAGCNGGTGGCAGGCACNGCNTCGTAGAACTANGTGGANCCCCCNGGGCTGCAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCCNANAGCTCCTGCGGCCGGCCTTCAGCCGGGAGCAGAAGGNAGGNCTGTGNATGGGCCAAGGGCGGCTGGGAGAACCAACATGGGGCGGACGTTCGNAGNATGGTTATTCTGGCGGNAAGGGCTCTTTCCAGNAAGCTGCCAAAGGGACAAGTCACCAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCAAAAGATTAAAAGGCCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAAAGGACAAAGTTGA]

[+] EMBL AA751715             [CNNAANGGGACAAAANNNTGGATNNNCACCAGCNGGTGGCAGGCACNGCNTCGTAGAACTANGTGGANCCCCCNGGGCTGCAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAGCGCCAGCCNANAGCTCCTGCGGCCGGCCTTCAGCCGGGAGCAGAAGGNAGGNCTGTGNATGGGCCAAGGGCGGCTGGGAGAACCAACATGGGGCGGACGTTCGNAGNATGGTTATTCTGGCGGNAAGGGCTCTTTCCAGNAAGCTGCCAAAGGGACAAGTCACCAACTGAAGTTTAATGTGAAAAAGAACTCAAGAGTACAGATCAAAAGATTAAAAGGCCAAAGGCAGAAAGAAAGCCAAGAATGCAAAGCCGCCGACAAAGGACAAAGTTGA]




>consensus_11464#1
CNNAANGGGACAAAANNNTGGATNNNCACCAGCNGGTGGCAGGCACNGCNTCGTAGAACT
ANGTGGANCCCCCNGGGCTGCAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCAT
GGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCTCCGTCTCCGGCAAG
CGCCAGCCNANAGCTCCTGCGGCCGGCCTTCAGCCGGGAGCAGAAGGNAGGNCTGTGNAT
GGGCCAAGGGCGGCTGGGAGAACCAACATGGGGCGGACGTTCGNAGNATGGTTATTCTGG
CGGNAAGGGCTCTTTCCAGNAAGCTGCCAAAGGGACAAGTCACCAACTGAAGTTTAATGT
GAAAAAGAACTCAAGAGTACAGATCAAAAGATTAAAAGGCCAAAGGCAGAAAGAAAGCCA
AGAATGCAAAGCCGCCGACAAAGGACAAAGTTGA

consensusID : consensus_11464#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [ATTCTTGAAGGGACTCCGCAAGNGATTNAAAATNCCNTGANGCTATCAACATCTTTCCTGTCTTAACTCTTTAGTACAAGCTACTTAGCTTTCTAATCAATGTATCCTCCTAAATACGATGATCAAGACCTGAGAGCTTCAAATGCATGTTNTCTTCGNCAATATTTGTATGAAACCCTCGATTTGCATGGTTTCTGCGCTAAAAA]

[+] EMBL BI806101             [ATTCTTGAAGGGACTCCGCAAGNGATTNAAAATNCCNTGANGCTATCAACATCTTTCCTGTCTTAACTCTTTAGTACAAGCTACTTAGCTTTCTAATCAATGTATCCTCCTAAATACGATGATCAAGACCTGAGAGCTTCAAATGCATGTTNTCTTCGNCAATATTTGTATGAAACCCTCGATTTGCATGGTTTCTGCGCTAAAAA]




>consensus_11464#2
ATTCTTGAAGGGACTCCGCAAGNGATTNAAAATNCCNTGANGCTATCAACATCTTTCCTG
TCTTAACTCTTTAGTACAAGCTACTTAGCTTTCTAATCAATGTATCCTCCTAAATACGAT
GATCAAGACCTGAGAGCTTCAAATGCATGTTNTCTTCGNCAATATTTGTATGAAACCCTC
GATTTGCATGGTTTCTGCGCTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11464#0      TCGTTTTTGCGGCGGCGCCCCCGAGCGAAGCAGCCGAGCACCCACCCGCCGCCGCCGCCG 60
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      TCGCCGATTCATGGCCAAGTTCAACGTGGTGCAGAAGAACAGGCGCGAGTGGAAGCAGGA 120
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      CCGCAAGCGCCAGGCCCATGGCGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCC 180
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      CGTCTCCGTCTCCGGCAAGCGCCAGCGCAAGCTCCTGCGCCGCCTCAGCCGGGAGCAGAA 240
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      GGAGGCTGTGATGGCCAAGGCGCTGGAGAACAACATGGGCGACGTCGAGATGGTATCTGC 300
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      GGAAGGCTCTTCAGAAGCTGCAAAGGACAAGTCACAACTGAAGTTTAATGTGAAAAAGAA 360
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      CTCAAGAGTACAGATCAAAAGATTAAAAGGCAAAGGCAGAAAGAAAGCCAAGAATGCAAA 420
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ------------------------------------------------------------
                                                                                   

consensus_11464#0      GCCGCCGACAAAGGACAAAGTTGACGCCATGGTGGAGTGACTGGATGTGGTTGATAACAC 480
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      ---------------------------------------------------------CNN 3
                                                                                   

consensus_11464#0      TCAGCTTCTACATTGTTGAAGGGA-TCCGCAAGG-ATTGAAAATACCATGAG-CTATCAA 537
consensus_11464#2      -----------ATTCTTGAAGGGACTCCGCAAGNGATTNAAAATNCCNTGANGCTATCAA 49
consensus_11464#1      AANGGGACAAAANNNTGGATNNNCACCAGCNGGTGGCAGGCACNGCNTCGTAGAACTANG 63
                                  *   * **       * **  *        *   *   *      *   

consensus_11464#0      AGCATCTTTACTGTCTTAA-TGTTTAGTACAAGCTA---GTTAGCTTTCTAATCAATGTA 593
consensus_11464#2      --CATCTTTCCTGTCTTAACTCTTTAGTACAAGCTA---CTTAGCTTTCTAATCAATGTA 104
consensus_11464#1      TGGANCCCCCNGGGCTGCAGGCGCGAGTGGAAGCAGGACCGCAAGCGCCAGGCCCATG-G 122
                          * *      * **  *      ***  ****        *     *    * ***  

consensus_11464#0      TCCTACTAAATACGATGATCAAGACCTGAGAGGTT-AAATGCATGGTTTTT---GGAA-T 648
consensus_11464#2      TCCTCCTAAATACGATGATCAAGACCTGAGAGCTTCAAATGCATGTTNTCTTCGNCAA-T 163
consensus_11464#1      CGACCCCAAGACCGGCAAGCTCAAGCAGCGCACGGCGCCCGTCT-CCGTCTCCGGCAAGC 181
                            * **   **   * *   * * * *          *  *    * *     **  

consensus_11464#0      ATTTGTATGAAAGCCT---GATTTGCATG------------------------------- 674
consensus_11464#2      ATTTGTATGAAACCCTC--GATTTGCATGGTTTCTGCGCTAAAAA--------------- 206
consensus_11464#1      GCCAGCCNANAGCTCCTGCGGCCGGCCTTCAGCCGGGAGCAGAAGGNAGGNCTGTGNATG 241
                           *     *   *    *    ** *                                

consensus_11464#0      ------------------------------------------------------------
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      GGCCAAGGGCGGCTGGGAGAACCAACATGGGGCGGACGTTCGNAGNATGGTTATTCTGGC 301
                                                                                   

consensus_11464#0      ------------------------------------------------------------
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      GGNAAGGGCTCTTTCCAGNAAGCTGCCAAAGGGACAAGTCACCAACTGAAGTTTAATGTG 361
                                                                                   

consensus_11464#0      ------------------------------------------------------------
consensus_11464#2      ------------------------------------------------------------
consensus_11464#1      AAAAAGAACTCAAGAGTACAGATCAAAAGATTAAAAGGCCAAAGGCAGAAAGAAAGCCAA 421
                                                                                   

consensus_11464#0      ---------------------------------
consensus_11464#2      ---------------------------------
consensus_11464#1      GAATGCAAAGCCGCCGACAAAGGACAAAGTTGA 454