cluster # 11467

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Oryza sativa
cluster # 11467 cluster # 11467 Sequences # 9 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_11467#0 length = 2344 sequences # 7

consensus_11467#1 length = 862 sequences # 1
consensus_11467#2 length = 249 sequences # 1

consensusID : consensus_11467#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 2344
fasta sequence

                              [CTTCTCCTGGTCGATGCGCCGGCCGCCTTAAGCCTTAAACCCTACTCTCCCACAAACCCCCCCACCCAAAGCCGCCATGGCTGCCGCCGCCGCGAAGGCCGCGGCCGCCGCCCTCTCCACCGCCGGTGTCGTCGCCTTCTCCTCCGAGCGGGCGTACGCCGATGGGGGCGCCCCCGCGTTCCGATTCCCCGGCTTCTCCGCCCCCCCGACCCCTCCCCCCGCCGCGCAGCCGCCGCCGCCGACGCCGCCGGCTCCCGCGCCGGCCGCGGAGGAGAAGCGCAAGGTCCGGAACGATCACCCCCGCACCAGCGCCGCCGGGTTCGACCCCGAGGCGCTGGAGCGCGGGGCCGCTATGCTGAAGCAGATCGAGAACTCGCCGCATGGCAAAAAGGTCTTCGAGATATTGAAGCAGCAGGAGGATGTGCGGAGGGCGGAGAACCTGACGAAGAAGGTGGAGTTTCAGAAGGAGCTTGCGGCGATCGAACTGGAGAAGACACGCGTTGATTATGATGAGAGGAAAAAACTTGAGCAACAGCGAGCTCAGGTAAAATCACAGATGTCTCGATACGAAGATGAGCTAGCAAGGAAGAGAATGCAGGCAGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTGAAGATGCAAGAGGAATCAGCGATTAGGCAAGAGCAGATGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAAGACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGAGGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTATTGAGGGGGCAAAGGCTGAGAAGGAGAAGTGGGTTCAATTAATAAATACAACCTTTGAGCATATAGGAGGTGGTCTACAGACAATATTAA-CTGATCAAAATAAGCTAGTTGTAGCAG-TTGGAGGTGTCACAGCACTTGCAGC-TGGGATATACACAACAAGGGAGGGTGCAAGAGTGGTCTGGGGCTATGTTGATCGTATTCTAGGTCAGCCATCACTTATTAGAGAGTCATCACGAGGGAAATATCCCTGGTCTGGTGTCTTCTCACGTGCTATGAGTACAATGACTAGTAAACTGAATAAAGGAAGCAACTTGGGGAACAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCCGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCT-GGGGAAGATGAGCGGTCCAAGCTTTTCAAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAGAAGATAGAGGTGAAGGGTGTCACAGATGACTTGATACGGGAGGCGGCTGCCAAGACCGAGGGTTTCTCAGGAAGAGAGATCGCGAAGCTGATGGCAAGTGTTCAGGCTGCCGTGTACGGAAGCAAGGAGTGCGTGCTGACTCCAGACCTGTTCCGTGAGGTTGTAGACTACAAGGTCGCCGAGCACCAGCAGAGGAGACGACTTGCTGGCTATGAGCAGAAGAATGCTTAGGAAGTCTCTTTTCGCGCAA-CCCCCCCCCCTCCCCCCTCTTTTGCTGTAGGCTCACAATGTTTATTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATCAACAGAAGAAGAGGATTACATGTATGAACGATAACCTAACGCAGTGTCACTTGCGACAAGATGGGAAATTTACTGGACAATATCATTGATCAGCTCTAATTTCGCATACATATTCCCCTCTGTTGATCTTTATTTTTTAAAAATAAATAAATAAATAAACGT]

[+] EMBL AK121757             [CTTCTCCTGGTCGATGCGCCGGCCGCCTTAAGCCTTAAACCCTACTCTCCCACAAACCCCCCCACCCAAAGCCGCCATGGCTGCCGCCGCCGCGAAGGCCGCGGCCGCCGCCCTCTCCACCGCCGGTGTCGTCGCCTTCTCCTCCGAGCGGGCGTACGCCGATGGGGGCGCCCCCGCGTTCCGATTCCCCGGCTTCTCCGCCCCCCCGACCCCTCCCCCCGCCGCGCAGCCGCCGCCGCCGACGCCGCCGGCTCCCGCGCCGGCCGCGGAGGAGAAGCGCAAGGTCCGGAACGATCACCCCCGCACCAGCGCCGCCGGGTTCGACCCCGAGGCGCTGGAGCGCGGGGCCGCTATGCTGAAGCAGATCGAGAACTCGCCGCATGGCAAAAAGGTCTTCGAGATATTGAAGCAGCAGGAGGATGTGCGGAGGGCGGAGAACCTGACGAAGAAGGTGGAGTTTCAGAAGGAGCTTGCGGCGATCGAACTGGAGAAGACACGCGTTGATTATGATGAGAGGAAAAAACTTGAGCAACAGCGAGCTCAGGTAAAATCACAGATGTCTCGATACGAAGATGAGCTAGCAAGGAAGAGAATGCAGGCAGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTGAAGATGCAAGAGGAATCAGCGATTAGGCAAGAGCAGATGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAAGACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGAGGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTATTGAGGGGGCAAAGGCTGAGAAGGAGAAGTGGGTTCAATTAATAAATACAACCTTTGAGCATATAGGAGGTGGTCTACAGACAATATTAA CTGATCAAAATAAGCTAGTTGTAGCAG TTGGAGGTGTCACAGCACTTGCAGC TGGGATATACACAACAAGGGAGGGTGCAAGAGTGGTCTGGGGCTATGTTGATCGTATTCTAGGTCAGCCATCACTTATTAGAGAGTCATCACGAGGGAAATATCCCTGGTCTGGTGTCTTCTCACGTGCTATGAGTACAATGACTAGTAAACTGAATAAAGGAAGCAACTTGGGGAACAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCCGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCT GGGGAAGATGAGCGGTCCAAGCTTTTCAAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAGAAGATAGAGGTGAAGGGTGTCACAGATGACTTGATACGGGAGGCGGCTGCCAAGACCGAGGGTTTCTCAGGAAGAGAGATCGCGAAGCTGATGGCAAGTGTTCAGGCTGCCGTGTACGGAAGCAAGGAGTGCGTGCTGACTCCAGACCTGTTCCGTGAGGTTGTAGACTACAAGGTCGCCGAGCACCAGCAGAGGAGACGACTTGCTGGCTATGAGCAGAAGAATGCTTAGGAAGTCTCTTTTCGCGCAA CCCCCCCCCCTCCCCCCTCTTTTGCTGTAGGCTCACAATGTTTATTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATCAACAGAAGAAGAGGATTACATGTATGAACGATAACCTAACGCAGTGTCACTTGCGACAAGATGGGAAATTTACTGGACAATATCATTGATCAGCTCTAATTTCGCATACATATTCCCCTCTGTTGATCTTTATTTTTTAAAAATAAATAAATAAATAAACGT]
[+] EMBL AU063361             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTNAAGATGCAAGAGGNATCAGCGATTAGGCAAGAGCAGNTGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAAGACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGAGGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTATTGAGNGGGCAAAGNCTGAGAAGGAGAAGTGGGTTCAATTANTAAATACANCCTTTGAGCATATAGGAGGTGGTCTACAGACAATATTAACCTGATC AAATAAGCTAGTTGTAGCAG TNGGAGGTG CACAGCACTTNCAGC TGGGATATACACCACAAGGGAGGGTGCAAGAGTGGCCTGGGGCTATGGTGn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU063437             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTGAAGATGCAAGAGGAATCAGCGATTAGGCAAGAGCAGATGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAAGACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGAGGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTATTGAGGGGGCAAAGGCTGAGAAGGAGAAGTGGGTTCAATTAATAAATACAACCTTTGAGCATATAGGAGGTNGTCTACAGACAATATTAA CTGATCAAAATAAGCTAGTTGTAGCAGTTTGGAGGTGTCACAGCACTTGCAGCTTGGGATATACACAACAAGGGAGGGTGCAAGAGTNGTCTTGGGCTATGTTGATCc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK060715             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTTGAGCATATAGGAGGTGGTCTACAGACAATATTAA CTGATCAAAATAAGCTAGTTGTAGCAG TTGGAGGTGTCACAGCACTTGCAGC TGGGATATACACAACAAGGGAGGGTGCAAGAGTGGTCTGGGGCTATGTTGATCGTATTCTAGGTCAGCCATCACTTATTAGAGAGTCATCACGAGGGAAATATCCCTGGTCTGGTGTCTTCTCACGTGCTATGAGTACAATGACTAGTAAACTGAATAAAGGAAGCAACTTGGGGAACAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAG AACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCCGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCT GGGGAAGATGAGCGGTCCAAGCTTTTCAAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAGAAGATAGAGGTGAAGGGTGTCACAGATGACTTGATACGGGAGGCGGCTGCCAAGACCGAGGGTTTCTCAGGAAGAGAGATCGCGAAGCTGATGGCAAGTGTTCAGGCTGCCGTGTACGGAAGCAAGGAGTGCGTGCTGACTCCAGACCTGTTCCGTGAGGTTGTAGACTACAAGGTCGCCGAGCACCAGCAGAGGAGACGACTTGCTGGCTATGAGCAGAAGAATGCTTAGGAAGTCTCTTTTCGCGCAACCCCCCCCCCCTCCCCCCTCTTTTGCTGTAGGCTCACAATGTTTATTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATCAACAGAAGAAGAGGATTACATGTATGAACGAT                                                                                                                                  ]
[+] EMBL OSS2368A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTTCCCTGAATGCTCTCCTTTTCCGCACAGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS2042A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATCAAGCTCCTTTTAGNAACATGCTTTTCTATGGTCCACCTGGCACAGNNAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGNTTCATCAGTNGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL C74753               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GAAACATGCTTTTCTATGGTCCACCTGGCACA GAAAAACGATGGCAGCAAGAGAACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGNCCGGTGACCTTGACTCTGCTGTCGCCGACCGAATCGATGAGGGCCTTGAGTTT CCTTGCCTNGGGGAA ATGAGCGGT CAAGCTTTcn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_11467#0
CTTCTCCTGGTCGATGCGCCGGCCGCCTTAAGCCTTAAACCCTACTCTCCCACAAACCCC
CCCACCCAAAGCCGCCATGGCTGCCGCCGCCGCGAAGGCCGCGGCCGCCGCCCTCTCCAC
CGCCGGTGTCGTCGCCTTCTCCTCCGAGCGGGCGTACGCCGATGGGGGCGCCCCCGCGTT
CCGATTCCCCGGCTTCTCCGCCCCCCCGACCCCTCCCCCCGCCGCGCAGCCGCCGCCGCC
GACGCCGCCGGCTCCCGCGCCGGCCGCGGAGGAGAAGCGCAAGGTCCGGAACGATCACCC
CCGCACCAGCGCCGCCGGGTTCGACCCCGAGGCGCTGGAGCGCGGGGCCGCTATGCTGAA
GCAGATCGAGAACTCGCCGCATGGCAAAAAGGTCTTCGAGATATTGAAGCAGCAGGAGGA
TGTGCGGAGGGCGGAGAACCTGACGAAGAAGGTGGAGTTTCAGAAGGAGCTTGCGGCGAT
CGAACTGGAGAAGACACGCGTTGATTATGATGAGAGGAAAAAACTTGAGCAACAGCGAGC
TCAGGTAAAATCACAGATGTCTCGATACGAAGATGAGCTAGCAAGGAAGAGAATGCAGGC
AGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTGAAGATGCAAGAGGAATCAGC
GATTAGGCAAGAGCAGATGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAA
GACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGA
GGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTAT
TGAGGGGGCAAAGGCTGAGAAGGAGAAGTGGGTTCAATTAATAAATACAACCTTTGAGCA
TATAGGAGGTGGTCTACAGACAATATTAACTGATCAAAATAAGCTAGTTGTAGCAGTTGG
AGGTGTCACAGCACTTGCAGCTGGGATATACACAACAAGGGAGGGTGCAAGAGTGGTCTG
GGGCTATGTTGATCGTATTCTAGGTCAGCCATCACTTATTAGAGAGTCATCACGAGGGAA
ATATCCCTGGTCTGGTGTCTTCTCACGTGCTATGAGTACAATGACTAGTAAACTGAATAA
AGGAAGCAACTTGGGGAACAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCT
TCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCC
TTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGA
ACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATT
GGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAG
AGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATA
TATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATC
TAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGC
CGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCTGGGGAAGATGAGCGGTCCAAGCT
TTTCAAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTG
GCTCAGGTTCTTCCGCGGTCAGCCTCAGAAGATAGAGGTGAAGGGTGTCACAGATGACTT
GATACGGGAGGCGGCTGCCAAGACCGAGGGTTTCTCAGGAAGAGAGATCGCGAAGCTGAT
GGCAAGTGTTCAGGCTGCCGTGTACGGAAGCAAGGAGTGCGTGCTGACTCCAGACCTGTT
CCGTGAGGTTGTAGACTACAAGGTCGCCGAGCACCAGCAGAGGAGACGACTTGCTGGCTA
TGAGCAGAAGAATGCTTAGGAAGTCTCTTTTCGCGCAACCCCCCCCCCTCCCCCCTCTTT
TGCTGTAGGCTCACAATGTTTATTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATC
TGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAG
TTTTTGGCAATGGTGGATGATCAACAGAAGAAGAGGATTACATGTATGAACGATAACCTA
ACGCAGTGTCACTTGCGACAAGATGGGAAATTTACTGGACAATATCATTGATCAGCTCTA
ATTTCGCATACATATTCCCCTCTGTTGATCTTTATTTTTTAAAAATAAATAAATAAATAA
ACGT

consensusID : consensus_11467#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 862
fasta sequence

                              [CAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAACTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCTGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCTGNGGAAGATGAAGCGTCCAAGCTTCTCAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAAAGAAAAAGGTGAGAAGGGGTACAAATGACTTGATACCGGAAGGCGGCTGCCAAACCCCAAGGTTTTCTACGAAAAAAAACCCCCAAATTTTGCCCCCCCCCCCCCCCCTTCTTTTTCCCCCCCCTNAACTCTACACTNCTACGCCCCCCCGATACCGGCCGCCACCCTATCTATCCCAGCGCCCACGTCCTTCCACCCCCACCACCCCCATCCTACCACCCCACTCCCCCCGTGTCCCCCACCNGTCAATTCC]

[+] EMBL CA758223             [CAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAACTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCTGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCTGNGGAAGATGAAGCGTCCAAGCTTCTCAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAAAGAAAAAGGTGAGAAGGGGTACAAATGACTTGATACCGGAAGGCGGCTGCCAAACCCCAAGGTTTTCTACGAAAAAAAACCCCCAAATTTTGCCCCCCCCCCCCCCCCTTCTTTTTCCCCCCCCTNAACTCTACACTNCTACGCCCCCCCGATACCGGCCGCCACCCTATCTATCCCAGCGCCCACGTCCTTCCACCCCCACCACCCCCATCCTACCACCCCACTCCCCCCGTGTCCCCCACCNGTCAATTCC]




>consensus_11467#1
CAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCTTCAGAAGAGAGTGAAGCA
GCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCCTTTTAGAAACATGCTTTT
CTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGAACTAACTCGGAAATCTGG
ATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATTGGGATCGCAAGCAGTCAC
TAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAGAGGTTTACTCCTCTTCAT
TGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATATATGAGTGAAGCTCAAAG
GAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATCTAAGGACATCGTCCTTGC
ACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGCTGACCGAATCGATGAGGT
CCTTGAGTTTCCCTTGCCTGNGGAAGATGAAGCGTCCAAGCTTCTCAACTATATCTGGAC
AAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTGGCTCAGGTTCTTCCGCGGT
CAGCCTCAAAGAAAAAGGTGAGAAGGGGTACAAATGACTTGATACCGGAAGGCGGCTGCC
AAACCCCAAGGTTTTCTACGAAAAAAAACCCCCAAATTTTGCCCCCCCCCCCCCCCCTTC
TTTTTCCCCCCCCTNAACTCTACACTNCTACGCCCCCCCGATACCGGCCGCCACCCTATC
TATCCCAGCGCCCACGTCCTTCCACCCCCACCACCCCCATCCTACCACCCCACTCCCCCC
GTGTCCCCCACCNGTCAATTCC

consensusID : consensus_11467#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [TTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATCAACAGAAGAANAGGATTACATGTATGAACGATAACCTAACGCAGTGTCNCTTGCGACAANATGGGAAATTTACTGGACAATATCATTGATCAGCTCTAATTTCGCATCCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU222545             [TTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATCAACAGAAGAANAGGATTACATGTATGAACGATAACCTAACGCAGTGTCNCTTGCGACAANATGGGAAATTTACTGGACAATATCATTGATCAGCTCTAATTTCGCATCCAAAAAAAAAAAAAAAAAAAA]




>consensus_11467#2
TTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTATCTGCTTCGTTGTCTTTAGCTTTA
TTATTCTTTTGCTGCAATCCTTACCCTTACATGGGGAGTTTTTGGCAATGGTGGATGATC
AACAGAAGAANAGGATTACATGTATGAACGATAACCTAACGCAGTGTCNCTTGCGACAAN
ATGGGAAATTTACTGGACAATATCATTGATCAGCTCTAATTTCGCATCCAAAAAAAAAAA
AAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11467#0      CTTCTCCTGGTCGATGCGCCGGCCGCCTTAAGCCTTAAACCCTACTCTCCCACAAACCCC 60
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CCCACCCAAAGCCGCCATGGCTGCCGCCGCCGCGAAGGCCGCGGCCGCCGCCCTCTCCAC 120
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CGCCGGTGTCGTCGCCTTCTCCTCCGAGCGGGCGTACGCCGATGGGGGCGCCCCCGCGTT 180
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CCGATTCCCCGGCTTCTCCGCCCCCCCGACCCCTCCCCCCGCCGCGCAGCCGCCGCCGCC 240
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GACGCCGCCGGCTCCCGCGCCGGCCGCGGAGGAGAAGCGCAAGGTCCGGAACGATCACCC 300
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CCGCACCAGCGCCGCCGGGTTCGACCCCGAGGCGCTGGAGCGCGGGGCCGCTATGCTGAA 360
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GCAGATCGAGAACTCGCCGCATGGCAAAAAGGTCTTCGAGATATTGAAGCAGCAGGAGGA 420
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TGTGCGGAGGGCGGAGAACCTGACGAAGAAGGTGGAGTTTCAGAAGGAGCTTGCGGCGAT 480
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CGAACTGGAGAAGACACGCGTTGATTATGATGAGAGGAAAAAACTTGAGCAACAGCGAGC 540
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TCAGGTAAAATCACAGATGTCTCGATACGAAGATGAGCTAGCAAGGAAGAGAATGCAGGC 600
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      AGATCATGAGGCCCAGAGAGTGAGAAACCAGGAGCTCGTGAAGATGCAAGAGGAATCAGC 660
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GATTAGGCAAGAGCAGATGAGACGTGCGATCGAGGAGCAAATACAGGAAGAACGAAGAAA 720
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GACTGATAGAGCAAAGGCAATTGTGGAGAAGGAAATTGAGCAAGAGAAAATTTTAGCTGA 780
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GGCAAATGCGAGAATAAAGTTAAAAAAACAAACTGAAGATGTTGAAAGGCGATTGCTTAT 840
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TGAGGGGGCAAAGGCTGAGAAGGAGAAGTGGGTTCAATTAATAAATACAACCTTTGAGCA 900
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TATAGGAGGTGGTCTACAGACAATATTAACTGATCAAAATAAGCTAGTTGTAGCAGTTGG 960
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      AGGTGTCACAGCACTTGCAGCTGGGATATACACAACAAGGGAGGGTGCAAGAGTGGTCTG 1020
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GGGCTATGTTGATCGTATTCTAGGTCAGCCATCACTTATTAGAGAGTCATCACGAGGGAA 1080
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      ATATCCCTGGTCTGGTGTCTTCTCACGTGCTATGAGTACAATGACTAGTAAACTGAATAA 1140
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      AGGAAGCAACTTGGGGAACAACGGGAATGGGTTTGGTGATGTTATTCTAAATCCTTCTCT 1200
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACTTCATCAAGCTCC 1260
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGATGGCAGCAAGAGA 1320
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      ACTAGCTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGATGTTGCACCATT 1380
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      GGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAAGAAATCAAATAG 1440
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      AGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACGGAACAAGACATA 1500
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCACAGGCGACCAATC 1560
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      TAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGACTCTGCTGTCGC 1620
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------------------------------------
                                                                                   

consensus_11467#0      CGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCTGGGGAAGATGAGCGGTCCAAGCT 1680
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      ------------------------------CAACGGGAATGGGTTTGGTGATGTTATTCT 30
                                                                                   

consensus_11467#0      TTTCAAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACACGAAAAGAGCTG 1740
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      AAATCCTTCTCTTCAGAAGAGAGTGAAGCAGCTTGCTAATGCCACTGCCAACACAAAACT 90
                                                                                   

consensus_11467#0      GCTCAGGTTCTTCCGCGGTCAGCCTCAGAAGATAGAGGTGAAGGGTGTCACAGATGACTT 1800
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      TCATCAAGCTCCTTTTAGAAACATGCTTTTCTATGGTCCACCTGGCACAGGAAAAACGAT 150
                                                                                   

consensus_11467#0      GATACGGGAGGCGGCTGCCAAGACCGAGGGTTTCTCAGGAAGAGAGATCGCGAAGCTGAT 1860
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      GGCAGCAAGAGAACTAACTCGGAAATCTGGATTAGATTATGCACTAATGACTGGTGGAGA 210
                                                                                   

consensus_11467#0      GGCAAGTGTTCAGGCTGCCGTGTACGGAAGCAAGGAGTGCGTGCTGACTCCAGACCTGTT 1920
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      TGTTGCACCATTGGGATCGCAAGCAGTCACTAAGATTCATCAGTTGTTTGACTGGGCAAA 270
                                                                                   

consensus_11467#0      CCGTGAGGTTGTAGACTACAAGGTCGCCGAGCACCAGCAGAGGAGACGACTTGCTGGCTA 1980
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      GAAATCAAATAGAGGTTTACTCCTCTTCATTGATGAAGCTGATGCTTTCTTGTGCGAACG 330
                                                                                   

consensus_11467#0      TGAGCAGAAGAATGCTTAGGAAGTCTCTTTTCGCGCAACCCCCCCCCCTCCCCCCTCTTT 2040
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      GAACAAGACATATATGAGTGAAGCTCAAAGGAGTGCCCTGAATGCTCTCCTTTTCCGCAC 390
                                                                                   

consensus_11467#0      TGCTGTAGGCTCACAATGTTTATTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTA-- 2098
consensus_11467#2      ----------------------TTTCTTGCGAGGTTGCCTGAACGGCCAGGTGATTTA-- 36
consensus_11467#1      AGGCGACCAATCTAAGGACATCGTCCTTGCACTTGCGACCAACAGGCCCGGTGACCTTGA 450
                                              * *****      * *  *  **** *****  *   

consensus_11467#0      -TCTGCT-TCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGG 2156
consensus_11467#2      -TCTGCT-TCGTTGTCTTTAGCTTTATTATTCTTTTGCTGCAATCCTTACCCTTACATGG 94
consensus_11467#1      CTCTGCTGTCGCTGACCGAATCGATGAGGTCCTTGAGTTTCCCTTGCCTGNGGAAGATGA 510
                        ****** *** ** *   * *  *    * ***  * * *  *          * *** 

consensus_11467#0      GGAGTTT----TTGGCAATGGTGGATGATCAACAGAAGAAGAGGATTACATGTATGA-AC 2211
consensus_11467#2      GGAGTTT----TTGGCAATGGTGGATGATCAACAGAAGAANAGGATTACATGTATGA-AC 149
consensus_11467#1      AGCGTCCAAGCTTCTCAACTATATCTGGACAAGTACATAATGAAAGCTGGTGAAAAACAC 570
                        * **      **  ***   *   **  ***    * **    *     ** *  * **

consensus_11467#0      GATAAC--CTAACGCAGTGTCACTTGCGACAAG-----ATGGGAAATTTACTGGACAATA 2264
consensus_11467#2      GATAAC--CTAACGCAGTGTCNCTTGCGACAAN-----ATGGGAAATTTACTGGACAATA 202
consensus_11467#1      GAAAAGAGCTGGCTCAGGTTCTTCCGCGGTCAGCCTCAAAGAAAAAGGTGAGAAGGGGTA 630
                       ** **   **  * ***  **    ***   *      * *  ***  *         **

consensus_11467#0      TCATTGATCAGCTCT---AATTTCGCATACATATTCCCCTCTGTTGATCTTTATTTTTTA 2321
consensus_11467#2      TCATTGATCAGCTCT---AATTTCGCATCCAAA--------------------------A 233
consensus_11467#1      CAAATGACTTGATACCGGAAGGCGGCTGCCAAACCCCAAGGTTTTCTAC----------G 680
                         * ***   * *     **    **   ** *                           

consensus_11467#0      AAAATAAATAAATAAATAAACGT------------------------------------- 2344
consensus_11467#2      AAAAAAAAAAAAAAAA-------------------------------------------- 249
consensus_11467#1      AAAAAAAACCCCCAAATTTTGCCCCCCCCCCCCCCCCTTCTTTTTCCCCCCCCTNAACTC 740
                       **** ***     ***                                            

consensus_11467#0      ------------------------------------------------------------
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      TACACTNCTACGCCCCCCCGATACCGGCCGCCACCCTATCTATCCCAGCGCCCACGTCCT 800
                                                                                   

consensus_11467#0      ------------------------------------------------------------
consensus_11467#2      ------------------------------------------------------------
consensus_11467#1      TCCACCCCCACCACCCCCATCCTACCACCCCACTCCCCCCGTGTCCCCCACCNGTCAATT 860
                                                                                   

consensus_11467#0      --
consensus_11467#2      --
consensus_11467#1      CC 862