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Oryza sativa
cluster # 11468 cluster # 11468       Sequences # 9       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11468#0 length = 1022 sequences # 4  
consensus_11468#1 length = 683 sequences # 1  
consensus_11468#2 length = 571 sequences # 1  
consensus_11468#3 length = 533 sequences # 1  
consensus_11468#4 length = 410 sequences # 1  
consensus_11468#5 length = 281 sequences # 1  

consensusID : consensus_11468#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1022
fasta sequence
                              [CTCTTCTCGCTGGAGCAGCAGGAGGAGGAGGAGATAGAGTGAGGCCGTGACGGCGACGGCGAGGTCTGGGGGCGGGGCGCGATGGGAGACGGAGCGGAGGCGGCGGGGGCGACCGCGGCGAGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGG-AGCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCT-ATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGATCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCTCCAGTTGCTGTGTTCTTGATTTCCATCGATCCGGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTAAAAAAAAAAAAA]

[+] EMBL CB618649             [CTCTTCTCGCTGGAGCAGCAGGAGGAGGAGGAGATAGAGTGAGGCCGTGACGGCGACGGCGAGGTCTGGGGGCGGGGCGCGATGGGAGACGGAGCGGAGGCGGCGGGGGCGACCGCGGCGAGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGG AGCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCT ATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCCAAAGTGACTAGTACAAGCTCTAC                                                                                                                                                                                                                                        ]
[+] EMBL AK068633             [                           GAGGAGATAGAGTGAGGCCGTGACGGCGACGGCGAGGTCTGGGGGCGGGGCGCGATGGGAGACGGAGCGGAGGCGGCGGGGGCGACCGCGGCGAGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTCGGCGACGCGGCGCTCGACCTCGGCCACGAGCTGGTGAGGCGGGGCGTCGATCTGGTCTACGGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGCCGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGG AGCAATACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCT ATGGAAGAACACCGGGCGCTGATCAATCATAGCCCCCCTCACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGATCAAGTGTCAAATTAAA                                                                                                                                                                                  ]
[-] EMBL AU070328             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGCAGCAATACACTC GTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTNATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGATCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCTCCAGTTGCTGTGTTCTTGATTTCCATCGATCCGGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTAAAAAAAAAAAAA]
[+] EMBL AU095867             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCT ATGGAAGAACACCGGCCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGATCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCTCCAGTTGCTGTGTTCTTGATTTCCATCGATCCGGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTAAAAAAAAAAAA ]


>consensus_11468#0 CTCTTCTCGCTGGAGCAGCAGGAGGAGGAGGAGATAGAGTGAGGCCGTGACGGCGACGGC GAGGTCTGGGGGCGGGGCGCGATGGGAGACGGAGCGGAGGCGGCGGGGGCGACCGCGGCG AGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTC GGCGACGCGGCGCTCGACCTCGGCCACGAGCTGGTGAGGCGGGGCGTCGATCTGGTCTAC GGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGC CGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTG GGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCC AAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATA ACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTAC TACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGAT TGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGCAA TACACTCGGTTGCACCAGGAGGTGGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGC TATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTCACTTCAAAAGTGACTAGTA CAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGATCAAGTGTCAAAT TAAACTCCTCACCATGGACATGGTCTCCAGTTGCTGTGTTCTTGATTTCCATCGATCCGG TGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTG CATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTAAAAAAAAAAA AA



consensusID : consensus_11468#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [GGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTTGATTATTCGTGGAATCCGGTATGGGAGCGGCTGCGGGAAAAGCAGCTGCAATTTTCTCGGTCGCCGACGTCACGGGTGGATCAGTGGAATGACATCTGATTGGATTTGTACTACTCATTTGAGGCTTTTCTTTTGGGGCTAAGAATGATGATGATGATGATGCGAGATCGCGAGGGTGATGCACTGGATTCTCATCGCTTTGAAGGTAGGCCGCGGGGGGCGTACTTTCCTCTGCTGGGTCGGTCGGTCTTTTTTGGCATTTGGTTTGCTTTACGGAGCGCGTCTTGTGTTGGTCTCGTCGTCTTTGGTTGATGACGGTCACGTCGGCACGTCCACGACGTTGTGGATGGAGATCCCTCGCTCCTGTGCTTTTCCTTTTCTTTCTCATTTTTCGCTTGGTTTGGCTTTGCTTGCACCCGATCGATCGATGTATCTGCACGACACGTCGATACGATCAGCGGCGAAACCAGAAATTATAAGAGAATAGGGCTAAGATATAACTCTAGAGCTGTATTTAATTCACACCAAAATTGAAAGTTTGGTTGAAATTGAAACGATATGACGG]

[-] EMBL CB618650             [GGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTTGATTATTCGTGGAATCCGGTATGGGAGCGGCTGCGGGAAAAGCAGCTGCAATTTTCTCGGTCGCCGACGTCACGGGTGGATCAGTGGAATGACATCTGATTGGATTTGTACTACTCATTTGAGGCTTTTCTTTTGGGGCTAAGAATGATGATGATGATGATGCGAGATCGCGAGGGTGATGCACTGGATTCTCATCGCTTTGAAGGTAGGCCGCGGGGGGCGTACTTTCCTCTGCTGGGTCGGTCGGTCTTTTTTGGCATTTGGTTTGCTTTACGGAGCGCGTCTTGTGTTGGTCTCGTCGTCTTTGGTTGATGACGGTCACGTCGGCACGTCCACGACGTTGTGGATGGAGATCCCTCGCTCCTGTGCTTTTCCTTTTCTTTCTCATTTTTCGCTTGGTTTGGCTTTGCTTGCACCCGATCGATCGATGTATCTGCACGACACGTCGATACGATCAGCGGCGAAACCAGAAATTATAAGAGAATAGGGCTAAGATATAACTCTAGAGCTGTATTTAATTCACACCAAAATTGAAAGTTTGGTTGAAATTGAAACGATATGACGG]


>consensus_11468#1 GGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACTGC TGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTTGA TTATTCGTGGAATCCGGTATGGGAGCGGCTGCGGGAAAAGCAGCTGCAATTTTCTCGGTC GCCGACGTCACGGGTGGATCAGTGGAATGACATCTGATTGGATTTGTACTACTCATTTGA GGCTTTTCTTTTGGGGCTAAGAATGATGATGATGATGATGCGAGATCGCGAGGGTGATGC ACTGGATTCTCATCGCTTTGAAGGTAGGCCGCGGGGGGCGTACTTTCCTCTGCTGGGTCG GTCGGTCTTTTTTGGCATTTGGTTTGCTTTACGGAGCGCGTCTTGTGTTGGTCTCGTCGT CTTTGGTTGATGACGGTCACGTCGGCACGTCCACGACGTTGTGGATGGAGATCCCTCGCT CCTGTGCTTTTCCTTTTCTTTCTCATTTTTCGCTTGGTTTGGCTTTGCTTGCACCCGATC GATCGATGTATCTGCACGACACGTCGATACGATCAGCGGCGAAACCAGAAATTATAAGAG AATAGGGCTAAGATATAACTCTAGAGCTGTATTTAATTCACACCAAAATTGAAAGTTTGG TTGAAATTGAAACGATATGACGG



consensusID : consensus_11468#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 571
fasta sequence
                              [CACTTGCTATCTTGAATTTGTCAGGGTGATGTTTATCTTGAATATGTCAGGGTGAAGTTACCTGATCCTAACATAATTGATAATAGTACGTGTATGCGATCATTTAAAAGAGATGTTTTACTTTGACTTGGAAGGACTGTACAGCTTTGTGAAGAATTTTGTAAAGGGAGTGGTTTGTGTTGACATTTGCAAATGTTGCTTTTCTAACAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGNCAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACNNNNATNNNNCAATACACTCAGTTGCACCNNNNNNNNGCCCCTGCAACAAGCTGNN]

[+] EMBL CF197179             [CACTTGCTATCTTGAATTTGTCAGGGTGATGTTTATCTTGAATATGTCAGGGTGAAGTTACCTGATCCTAACATAATTGATAATAGTACGTGTATGCGATCATTTAAAAGAGATGTTTTACTTTGACTTGGAAGGACTGTACAGCTTTGTGAAGAATTTTGTAAAGGGAGTGGTTTGTGTTGACATTTGCAAATGTTGCTTTTCTAACAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGNCAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACNNNNATNNNNCAATACACTCAGTTGCACCNNNNNNNNGCCCCTGCAACAAGCTGNN]


>consensus_11468#2 CACTTGCTATCTTGAATTTGTCAGGGTGATGTTTATCTTGAATATGTCAGGGTGAAGTTA CCTGATCCTAACATAATTGATAATAGTACGTGTATGCGATCATTTAAAAGAGATGTTTTA CTTTGACTTGGAAGGACTGTACAGCTTTGTGAAGAATTTTGTAAAGGGAGTGGTTTGTGT TGACATTTGCAAATGTTGCTTTTCTAACAGATATCAGGTGAGAGTGTGGGAGAAGTAATA GTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATT GCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAA CTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTG CTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGNCAAATA TTTGTATCTGCACCAACTGCAAGTGAATTGCTGACNNNNATNNNNCAATACACTCAGTTG CACCNNNNNNNNGCCCCTGCAACAAGCTGNN



consensusID : consensus_11468#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence
                              [CGTGTCGTCGGGTACGTACGCACGCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCCTCATTACTTTTGCTGCCTTGCTTTCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGTACGTGCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGCAATACACT]

[+] EMBL CF304660             [CGTGTCGTCGGGTACGTACGCACGCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCCTCATTACTTTTGCTGCCTTGCTTTCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGTACGTGCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGCAATACACT]


>consensus_11468#3 CGTGTCGTCGGGTACGTACGCACGCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCC TCATTACTTTTGCTGCCTTGCTTTCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGT ACGTGCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGG TGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTGGGAGAAGTAATAG TTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCAAAGCGTTCATTG CTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATAACATGGTGCCAAC TTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTACTACGATCCACTGC TCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGATTGTAGACAAATAT TTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGCAATACACT



consensusID : consensus_11468#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence
                              [CTGCNCCAACTGCAAGTTGAATTCTTGACNAAGATGGAGGAGGTGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTNACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGANCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCNCCAGTTGCTGTGTTCTTGATTTCCATCGANCCGGTGACGAACCAAANAANCCGGTCGTCACCNNCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCNTGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU070452             [CTGCNCCAACTGCAAGTTGAATTCTTGACNAAGATGGAGGAGGTGCCCCTGCAACAAGCTGGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCTNACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTTCTTGTGANCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCNCCAGTTGCTGTGTTCTTGATTTCCATCGANCCGGTGACGAACCAAANAANCCGGTCGTCACCNNCTACAAATTTATTTGAAGTTTGAACTGCTGCATGAATGCNTGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_11468#4 CTGCNCCAACTGCAAGTTGAATTCTTGACNAAGATGGAGGAGGTGCCCCTGCAACAAGCT GGGAGATCTCAGAGCTTGGCTATGGAAGAACACCGGGCGCTGATCAATCCTAGCCCCCCT NACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTTTGCTTTTGTTTTCCCTTGCTT CTTGTGANCAAGTGTCAAATTAAACTCCTCACCATGGACATGGTCNCCAGTTGCTGTGTT CTTGATTTCCATCGANCCGGTGACGAACCAAANAANCCGGTCGTCACCNNCTACAAATTT ATTTGAAGTTTGAACTGCTGCATGAATGCNTGATCATGTAGTGGGAGTAATATAATTTAC TAGTAATTTATGTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_11468#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence
                              [GCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCCTCATTACTTTTGCTGCCTTGCTTTCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGTACGTGCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGGTCTGCAATCTCTTCGACTTCCTTTCAGTATTTCGTAGATTTTTCAGGGTTCAGAAGTGTCGTTGAATTCAGCTCTGTATTGGTATGTTTTAGCG]

[+] EMBL AU176488             [GCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCCTCATTACTTTTGCTGCCTTGCTTTCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGTACGTGCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGGTCTGCAATCTCTTCGACTTCCTTTCAGTATTTCGTAGATTTTTCAGGGTTCAGAAGTGTCGTTGAATTCAGCTCTGTATTGGTATGTTTTAGCG]


>consensus_11468#5 GCAGCCAGCTTCGTTTCTGCGCCTGAGAGCGATTTCCTCATTACTTTTGCTGCCTTGCTT TCGCGGCTGCACCTGCGGATGCCTGTGATTCTCGTGTACGTGCTACACCACCATCTAATG CGGCGTGATAAAATTTTTGCTTGATTTATTCGCAGGGTGATTCCTAGAGCTCTCATGGCT GTCGAGGTCTGCAATCTCTTCGACTTCCTTTCAGTATTTCGTAGATTTTTCAGGGTTCAG AAGTGTCGTTGAATTCAGCTCTGTATTGGTATGTTTTAGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11468#0      CTCTTCTCGCTGGAGCAGCAGGAGGAGGAGGAGATAGAGTGAGGCCGTGACGGCGACGGC 60
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      GAGGTCTGGGGGCGGGGCGCGATGGGAGACGGAGCGGAGGCGGCGGGGGCGACCGCGGCG 120
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      AGCAGGTTCGGGACGATCTGCGTCTTCTGCGGCAGCAACGCGGGGCGCCGCAGGGTGTTC 180
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      GGCGACGCGGCGCTCGACCTCGGCCACGAGCTGGTGAGGCGGGGCGTCGATCTGGTCTAC 240
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      GGCGGCGGCAGCATCGGGCTGATGGGCTTGATCGCGCGTACGGTTCTCGACGGCGGCCGC 300
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      CGTGTCGTCGGGGTGATTCCTAGAGCTCTCATGGCTGTCGAGATATCAGGTGAGAGTGTG 360
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      GGAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCC 420
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      AAAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTAGAGATGATA 480
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      ACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTAC 540
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ------------------------------------------------------------
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ------------------------------------------------------------
consensus_11468#1      ------------------------------------------------------------
                                                                                   

consensus_11468#0      TACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGAT 600
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ----------------------------------------------------------CG 2
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      --------------------------------------------------------CACT 4
consensus_11468#1      --GGTGACGAACCAAAGAAGCCGGTCGTCACCGTCTACAAATTTATTTGAAGTTTGAACT 58
                                                                                   

consensus_11468#0      TGTAGACAAATATTTGTATCTGCACCAACTGCAAG-T-GAATTGCTGACAAAGATGGAGC 658
consensus_11468#4      -------------------CTGCNCCAACTGCAAG-TTGAATTCTTGACNAAGATGGAG- 39
consensus_11468#3      TGTCGTCGGGTACGTACGCACGCAGCCAGCTTCGT-TTCTGCGCCTGAGAGCGATTTCCT 61
consensus_11468#5      ---------------------GCAGCCAGCTTCGT-TTCTGCGCCTGAGAGCGATTTCCT 38
consensus_11468#2      TGCTATCTTGAATTTGTCAGGGTGATGTTTATCTT-GAATATGTCAGGGTGAAGTTACCT 63
consensus_11468#1      GCTGCATGAATGCATGATCATGTAGTGGGAGTAATATAATTTACTAGTAATTTATGTTTT 118
                                            *                        *       *     

consensus_11468#0      AATACACTCGGTTGCACCAGGAGGTGGCCCCTGCA--ACAAGCTGGGAGATCTCAGA--- 713
consensus_11468#4      --------------------GAGGTG-CCCCTGCA--ACAAGCTGGGAGATCTCAGA--- 73
consensus_11468#3      CAT--TACTTTTGCTGCCTTGCTTTCGCGGCTGC---ACCTGCGGATGCCTGTGATTC-- 114
consensus_11468#5      CAT--TACTTTTGCTGCCTTGCTTTCGCGGCTGC---ACCTGCGGATGCCTGTGATTC-- 91
consensus_11468#2      GATCCTAACATAATTGATAATAGTACGTGTATGCG--ATCATTTAAAAGAGATGTTTT-- 119
consensus_11468#1      GATTATTCGTGGAATCCGGTATGGGAGCGGCTGCGGGAAAAGCAGCTGCAATTTTCTCGG 178
                                                      ***   *              *       

consensus_11468#0      GCTTGGCTAT----GGAAGAAC-------ACCGGGCGCTGATCAATCCTAGCCCCC--CT 760
consensus_11468#4      GCTTGGCTAT----GGAAGAAC-------ACCGGGCGCTGATCAATCCTAGCCCCC--CT 120
consensus_11468#3      TCGTGTACGT----GCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTG-ATT 169
consensus_11468#5      TCGTGTACGT----GCTACACCACCATCTAATGCGGCGTGATAAAATTTTTGCTTG-ATT 146
consensus_11468#2      ACTTTGACTT----GGAAGGAC----TGTACAGCTTTGTGAAGAATTTTGTAAAGGGAGT 171
consensus_11468#1      TCGCCGACGTCACGGGTGGATCA--GTGGAATGACATCTGATTGGATTTGTACTAC---T 233
                        *       *    *      *       *  *     ***       *          *

consensus_11468#0      CACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTT-TGCTTTTGTTT----TCCCT 815
consensus_11468#4      NACTTCAAAAGTGACTAGTACAAGCTCTACTAATGCCTT-TGCTTTTGTTT----TCCCT 175
consensus_11468#3      TATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGA-GATATCAGGTGAGAGTGTGG 228
consensus_11468#5      TATTCGCAGGGTGATTCCTAGAGCTCTCATGGCTGTCGA-GGTCTGCAATC----TCTTC 201
consensus_11468#2      GGTTTGTGTTGACATTTGCAAATGTTGCTTTTCTAAC-A-GATATCAGGTGAGAGTGTGG 229
consensus_11468#1      CATTTGAGGCTTTTCTTTTGGGGCTAAGAATGATGATGATGATGATGCGAGATCGCGAGG 293
                          *           *                 *                          

consensus_11468#0      TGCTTCTTGTGATCAAGTGTCAAATTAAACTCCTCACCATGGACATGG-TCTCC-AGTTG 873
consensus_11468#4      TGCTTCTTGTGANCAAGTGTCAAATTAAACTCCTCACCATGGACATGG-TCNCC-AGTTG 233
consensus_11468#3      GAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCA 288
consensus_11468#5      GACTTCCTTTCAGTATTTCGTAGATTTTT---CAGGGTTCAGAAGTG--TCGTTGAATTC 256
consensus_11468#2      GAGAAGTAATAGTTGTACAGGACATGCATGAGCGGAAAGCGGAGATGGCTCGGCGATCCA 289
consensus_11468#1      GTGATGCACTGGATTCTCATCGCTTTGAAG-GTAGGCCGCGGGGGGCGTACTTTCCTCTG 352
                                *              *                *        *         

consensus_11468#0      CTGTGTTC-TTGATTTCCATCGATCCGGTGACGAACCAAAGAAGCCGGTC--GTCAC--C 928
consensus_11468#4      CTGTGTTC-TTGATTTCCATCGANCCGGTGACGAACCAAANAANCCGGTC--GTCAC--C 288
consensus_11468#3      AAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTA--GAGATGAT 346
consensus_11468#5      AGCTCTGTATTGGTATGTTTTAGCG----------------------------------- 281
consensus_11468#2      AAGCGTTCATTGCTCTTCCTGGGGGCTATGGAACAATGGAGGAGCTGTTA--GAGATGAT 347
consensus_11468#1      CTGGGTCGGTCGGTCTTTTTTGGCATTTGGTTTGCTTTACGGAGCGCGTCTTGTGTTGGT 412
                            *   * * * *   *                                        

consensus_11468#0      GTCTACAAATTTATTTGAAGTT--TGAACTGCTGCATGAATGCATGATCATGTAGTGGGA 986
consensus_11468#4      NNCTACAAATTTATTTGAAGTT--TGAACTGCTGCATGAATGCNTGATCATGTAGTGGGA 346
consensus_11468#3      AACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTA 406
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      AACATGGTGCCAACTTGGAATTCATGACAAGCCAGTTGGATTGCTAAATGTTGACGGTTA 407
consensus_11468#1      CTCGTCGTCTTTGGTTGATGACGGTCACGT-CGGCACGTCCACGACGTTGTGGATGGAGA 471
                                                                                   

consensus_11468#0      GTAATATAATTTACTAGTAATTTA----------AAAAAAAAAAAA-------------- 1022
consensus_11468#4      GTAATATAATTTACTAGTAATTTATGTTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAA 406
consensus_11468#3      CTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGA 466
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      CTACGATCCACTGCTCGCGTTGTTCGACAAAGGCGAGGCGGAGGGCTTCATCAACTCTGA 467
consensus_11468#1      TCCCTCGCTCCTGTGCTTTTCCTTTTCTTTCTCATTTTTCGCTTGGTTTGGCTTTGCTTG 531
                                                                                   

consensus_11468#0      ------------------------------------------------------------
consensus_11468#4      AAAA-------------------------------------------------------- 410
consensus_11468#3      TTGTAGACAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACAAAGATGGAGCA 526
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      TTGTAGNCAAATATTTGTATCTGCACCAACTGCAAGTGAATTGCTGACNNNNATNNNNCA 527
consensus_11468#1      CACCCGATCGATCGATGTATCTGCACGACACGTCGATACGATCAGCGGCGAAACCAGAAA 591
                                                                                   

consensus_11468#0      ------------------------------------------------------------
consensus_11468#4      ------------------------------------------------------------
consensus_11468#3      ATACACT----------------------------------------------------- 533
consensus_11468#5      ------------------------------------------------------------
consensus_11468#2      ATACACTCAGTTGCACCNNNNNNNNGCCCCTGCAACAAGCTGNN---------------- 571
consensus_11468#1      TTATAAGAGAATAGGGCTAAGATATAACTCTAGAGCTGTATTTAATTCACACCAAAATTG 651
                                                                                   

consensus_11468#0      --------------------------------
consensus_11468#4      --------------------------------
consensus_11468#3      --------------------------------
consensus_11468#5      --------------------------------
consensus_11468#2      --------------------------------
consensus_11468#1      AAAGTTTGGTTGAAATTGAAACGATATGACGG 683
                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)