These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11469#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2166 fasta sequence [TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATC-ATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCTAGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTATATTAGGCCCTGTTTGATCTAATACTTGCAAAAAAAAAACTAGAATAGTAAGTGATTAAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTATACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG-TG-ATGAGTT-GAACT-CCCAGAGAAGGACAG-TAG-AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC-TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA] [+] EMBL AK101433 [TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATC ATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCTAGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTATATTAGGCCCTGTTTGATCTAATACTTGCAAAAAAAAAACTAGAATAGTAAGTGATTAAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTATACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAGGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATC ] [+] EMBL CB659865 [ GTCCTAGAGGCACCTACAGCAGCAACCTGCATATTCTCGATCTGGATCTACGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCATATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGA GGGGGGGGGGGGGGCCAAAACTCACCATCGGTACTAAACTTGTTAAAAAAAGGGCAATAAGACAAAGGCTAGATATTTCTTTCCCTCACCCATTTGGAAAAGGGTGTGGAAGCCATGCAAAATTATTTAAAAGCGAGGTTACCTTTATTGAAAAAAATCTATGTGCCTCTGAACCCCTCAAAATGGA ] [-] EMBL BU673674 [ CCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA] [-] EMBL CB966628 [ CCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACG TG ATGAGTT GAACT CCCAGAGAAGGACAG TAG AGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAAC TTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGC ACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA] [-] EMBL BU673271 [ CAACGTTGAATGATTTGGAACTCCCCGGAGAAGGACCGTTAGAAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCCATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGC ACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTGA] consensusID : consensus_11469#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1670 fasta sequence [AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACATTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGTTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACATGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTT] [+] EMBL AK107428 [AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAACTCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACATTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGGGGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGTTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACATGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTTCAATATCATTGTTCCTT] consensusID : consensus_11469#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1219 fasta sequence [GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCTTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTGCTGCCCAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGGCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACGTGATGAGTTGAACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTGGAATATCATTGTTCCTTAATTTGGTTTAAAAAA] [+] EMBL CB096551 [GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCTTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTGCTGCCCAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGG ] [-] EMBL CB659864 [ AGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGAACGAGTTCTGTCTAAACTAAATGAAGTTGCTCAATCACAACAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGGAAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAAAGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGCTACTGCCCAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTAT GGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATCTCAACGTGATGAGTTGAACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAAAACTTGATGAGCAAATGGCCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCATCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTATTTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATTTAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAAATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATTGGAATATCATTGTTCCTTAATTTGGTTTAAAAAA] consensusID : consensus_11469#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 673 fasta sequence [GTGCAATTAATAGAGTGGGTGAAGAAAGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGTTTCTGCCCAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATTTCAACGGGATGAGTTGAACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAAAACTTGATGGGCAAATGGCCATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCATCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTTTTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTTTAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAAATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATTTCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGGAGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG] [-] EMBL CB681641 [GTGCAATTAATAGAGTGGGTGAAGAAAGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGTTTCTGCCCAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGGAAGACCAAGTCCGCAAATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAACAATTTCAACGGGATGAGTTGAACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAAAACTTGATGGGCAAATGGCCATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCATCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTTTTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTTTAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAAATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATTTCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGGAGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 TATTAAAGCCAGCAGCATTTAGAGCGTCCTAGAGGCACCTACAGCAGCAACCTGCATATT 60 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 CTCGATCTGGATCTAGGCAGCTGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCT 120 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 GAGGATTTTTGGGTTAGCACCGGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAG 180 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 TTCCCGGCTGCGTCAGGGAAATCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCA 240 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ACGATCTCGTCAAGTGGGGACTGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGA 300 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AGCGAACAAGACATAGATGATCAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAA 360 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ATTGCCTCTACACTGCTAAACTCAAGATGTCGTGCTCCAAGGAGGGGGGGGGGGGGGGCG 420 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAGAAAGGCTAGATAT 480 consensus_11469#1 ------------------------------------------------------------ consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 TTCTTTTCCTCAACCATTTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGA 540 consensus_11469#1 ------------------------AGCAACCTGCATATTCTCGATCTGGATCTAGGCAGC 36 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 GGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAATGGAAGACCATTGA 600 consensus_11469#1 TGCTTGCAAAATTCGGGTGGCAGCGTGAAAATTTCTCCTGAGGATTTTTGGGTTAGCACC 96 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGGATGCATTTCCTGA 660 consensus_11469#1 GGCCGGTGAGAAGTTCACGGGATGGCCAGAAAAAATGAGTTCCCGGCTGCGTCAGGGAAA 156 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 GCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTTGAAGAGTAGTATAGTAATCG 720 consensus_11469#1 TCAACGAGTGGATACTGCAGATCAACCGGCCACACGTCAACGATCTCGTCAAGTGGGGAC 216 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ACGTTATCGTCTCCACTGCTTGCACCATAACAAGAAACCAAGGCCAACCCATGTTTCACC 780 consensus_11469#1 TGTGGGTGAACAAATGGCATCGATCATGCCATTGATAGAAGCGAACAAGACATAGATGAT 276 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGATGAGGATTTTCAGAAAAGAAG 840 consensus_11469#1 CAGCAGGCCTCTGATGTTGCCATGGATGATGCAGAACAAATTGCCTCTACACTGCTAAAC 336 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 CAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGCTCTAAAGTGGGAACTAAATC 900 consensus_11469#1 TCAAGATGTATGATTTGTTTCAAATAATATTTTTGCCATGGTTTAATTGAACTATTTACA 396 consensus_11469#2 ------------------------------------------------------------ consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACAGGTGAATGGCCTACAACAAT 960 consensus_11469#1 TTGAAATGTCTATTTTGACTGCTCCTGTTTTTACTGACATAGGTCGTGCTCCAAGGAGGG 456 consensus_11469#2 -------GAGACAAGGGGGGGCAAGAAGAGAAAGGCTAGATATTTCTTTTCCTCAACCCT 53 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 GCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACATGGTCTGTTCCTAATGGTGA 1020 consensus_11469#1 GGGGGGGGGGGCGAAAAGTCACCATCAATACCAAACTTGTTAAGAAAAGGGCAAGAAGAG 516 consensus_11469#2 TTGGAAAAGTGTGTGGAAAGCATGCAAAATTATTTAAAAGTGGCTAATGTTTGGAAGAAG 113 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ACGAGTTCTGGTATATATCTTTACTTATGACAACTTGTTTTTTTTAGATTTCAGCCTAAA 1080 consensus_11469#1 AAAGGCTAGATATTTCTTTTCCTCAACCATTTAGAAAAGTGTGTGGAAAGCATGCAAAAT 576 consensus_11469#2 TTGAAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCTATGAAGCAGGTT 173 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 CTATATGATATGTGTCAATGTACCTTCTGAGTAGTACTATTTTACCATTGGAAACGCTTC 1140 consensus_11469#1 TATTTAAAAGTGAGGTTACCGTTATTGTAAGAAATCATGTGCCTCTGAAAGCCAAAAAAT 636 consensus_11469#2 GNAGAGTAGTATAGTAATCGACGTTAACGTCTCCACTGCTTGCACCATAACAAGAAACCA 233 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 CATCTGCCCTATCTGTATGATTCTTTTGCTTACTGTTGTTTTCACATTACAAATGCTTCT 1200 consensus_11469#1 GGAAGACCATTGAAAAGCAACATCCTGGTACAATGGCTAATGTTTGGAAGAAGTTGAAGG 696 consensus_11469#2 AGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCATGTGTGGACCGAT 293 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ATTACTCTAAAATTTCACCTTAACAAGTCCACCTCACAAGAAGTGCATACTAAATGGGCT 1260 consensus_11469#1 TTGTTAAATATTCTTATGTCAACATATTTTACATATTTATTTTTTTTTTAGTTGCCAACA 756 consensus_11469#2 GAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAGCAGGAGATGGGC 353 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AGGTGAACTACTGAACTGTGTTGTTGCTAAATAATCAGTAAGTGATATCATTCATTTTAT 1320 consensus_11469#1 TGGAACTTTTGCTGACAGGATGCATTTCCTGAGCTACGCAACGAAGATGAAGATTGTGCT 816 consensus_11469#2 TCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGAAACAAAGAGACA 413 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ATTAGGCCCTGTTTGATCTAATACTTGCAAA----AAAAAAACTAGAATAGTAAGTGATT 1376 consensus_11469#1 ATGAAGCAGGTTGAAGAGTAGTATAGTAATCGACGTTATCGTCTCCACTGCTTGCACCAT 876 consensus_11469#2 GGNGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAAAGGCTGATGGAACA 473 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 AAAAATCATATTTGTTGTACCTTGAAACCTTGTATGAGGTGTTAGTTTGTTTATGCTTAT 1436 consensus_11469#1 AACAAGAAACCAAGGCCAACCCATGTTTCACCAGAAGATTGGGCTTGGCTGATAAAGCAT 936 consensus_11469#2 TGGTCTGTTCCTAATGGNGAACGAGNTCTGTCTAAACTAAATGAAGTTGCTCAATCACAA 533 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 ACATTTTCTTTTTATAATCTGTGTCAACAGTCTAAACTAAATGAAGTTGCTCAATCACAA 1496 consensus_11469#1 GTGTGGACCGGTGAGGATTTTCAGAAAAGAAGCAACCAGAATGCAGCTAACAGGGCAAAG 996 consensus_11469#2 CAAGAAAAGATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGG 593 consensus_11469#3 ------------------------------------------------------------ consensus_11469#0 CAAGAAAATATATGTTCTGCAGCAGTACCACTAGTAGAGCATTTTGCCTTGGTCCTTGGG 1556 consensus_11469#1 CAGGAGATGGGCTCTAAAGTGGGAACTAAATCAATTGCTCAAATTGCACATGAACTGAGA 1056 consensus_11469#2 AAAAAAGCGAACCATTCGCGTGGTATGGGCTTACGCGCAATTAATAGAGTGGCTGAAGAA 653 consensus_11469#3 ----------------------------------GTGCAATTAATAGAGTGGGTGAAGAA 26 consensus_11469#0 AAAAAAGCGAACCATTCACGTGGTATAGGCTTACGTGCAATTAATAGAGTGGCTGAAGAA 1616 consensus_11469#1 AACAAAGAGA--CAGGTGAATGGCCTACAACAATGCAAGTTTGGAAAGCAACCTATCAAA 1114 * ** * * ** consensus_11469#2 AGGCTAAGGGTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGC------TGCTGCC 707 consensus_11469#3 AGGCTAAGGTTTCTTGCCCAAGTTGAGGCTGGTGAAAAGCATGCAGT------TTCTGCC 80 consensus_11469#0 AGGCTAAGGTTACTTGCACAAGTTGAGGCTGCTGAAAAGCATGCAGC------TACTGCC 1670 consensus_11469#1 AGGCTGATGGAACATGGTCT-GTTCCTAATGGTGAACGAGTTCTGGTATATATCTTTACT 1173 ***** * * * ** * *** ** **** * * * * consensus_11469#2 CAGGAGCGTGTTGATGCTGCGGAACANCGAGCAGTAGCTATGGGAAGACCAAGGCCGCAA 767 consensus_11469#3 CAGGAGGGTGTTGATGTTGCGGAACAGCGAGCAGTAGCTATGG-AAGACCAAGTCCGCAA 139 consensus_11469#0 CAGGAGCGTGTTGATGCTGCGGAACAGCGAGCAGTAGCTATGG-AAGACCAAGTCCGCAA 1729 consensus_11469#1 TATGACAAC-TTGTTTTTTTAGATTTCAGCCTAAACTATATGATATGTGTCAATGTACCT 1232 * ** *** * * ** * * **** * * * * consensus_11469#2 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATCTCAACGTGATGAGTTGA 826 consensus_11469#3 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATTTCAACGGGATGAGTTGA 198 consensus_11469#0 ATTGGATGAAACAAATGCCCAGTTGCAAGTAGAGCAA-CAATCTCAACGTGATGAGTTGA 1788 consensus_11469#1 TCTGAGTAGTACTATTTTACCATTGGAAACGCTTCCATCTGCCCTATCTGTATGATTCTT 1292 ** * ** * * * *** ** * * * * * **** * consensus_11469#2 ACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAA 886 consensus_11469#3 ACTCCCCGAGAAGGCCAGTAGAGGGGCAAGCTTCAGATGTTGAAAGAATGGTTCAACAAA 258 consensus_11469#0 ACTCCCAGAGAAGGACAGTAGAGGGACAAGCTACAGATGTTGAAAGAATGGTACAACAAA 1848 consensus_11469#1 TTGCTTACTGTTGTTTTCACATTACAAATGCTTCTATTACTCTAAAATTTCACCTTAACA 1352 * * * * *** * * * ** * * * * * consensus_11469#2 AACTTGATGAGCAAATGGC-CATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 945 consensus_11469#3 AACTTGATGGGCAAATGGC-CATATATTTTTCCCGGTTTGGTTTTTCCAAAGGGGTTTCA 317 consensus_11469#0 AACTTGATGAGCAAATGGC-CATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 1907 consensus_11469#1 AGTCCACCTCACAAGAAGTGCATATATTTCTCACGCTTCGCTTCTTCCAATGGTGTTTCA 1412 * *** * ********* ** ** ** * ** ****** ** ****** consensus_11469#2 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTAT 1005 consensus_11469#3 TCCTCCCGATTTCCATCAGATGGCCCTTAGAATGCATGAAGTTGATTTCCAGAAGTTTTT 377 consensus_11469#0 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTTCAGAAGTCTAT 1967 consensus_11469#1 TCCTCACGATCTCCATCAGATGACCATTAGAATGCATGAAGTTGATCTCCAGAAGTCTAT 1472 ***** **** *********** ** ******************** * ******* * * consensus_11469#2 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 1065 consensus_11469#3 TTAATCAAGGGGAAGACATCCTAAGTTTATTTCCCCGAATAATTTAGTATTAGTCCCCTT 437 consensus_11469#0 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 2027 consensus_11469#1 TTAATCAAGCTGAAGACATCCTAAGTCTATTTCACCGAATAATTTAGTATTAGTCCCATT 1532 ********* *************** ****** *********************** ** consensus_11469#2 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 1125 consensus_11469#3 TAAGTTTTTTCTGGTTGCTTTAGTTTTCATCATGATGTTTATGTCAGCATTTTGGGGGAA 497 consensus_11469#0 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 2087 consensus_11469#1 TAAGTTTCTACTGGTTGCTTTAGTTCTCATCATGATGTTTATGTCAGCATTTCGTGAGAA 1592 ******* * *************** ************************** * * *** consensus_11469#2 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 1185 consensus_11469#3 ATTTTGAGCTTTTTGTTGAGGGCAACATTTGTTTGGTTGTAAGACTTTTGAATAAATATT 557 consensus_11469#0 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 2147 consensus_11469#1 ATTTTGAGCTTCTTGTTGAGTGCAACATTTGTTTGGTTGTAAGACTTCTGAATAAATATT 1652 *********** ******** ************************** ************ consensus_11469#2 GGAATATCATTGTTCCTTAATTTGGTTTAAAAAA-------------------------- 1219 consensus_11469#3 TCAAAATCATTGTTCCTTAATTTGGTTTAATTGAGATGTTATTTTTTTTAATGGGGTTGG 617 consensus_11469#0 TCAATATCATTGTTCCTGA----------------------------------------- 2166 consensus_11469#1 TCAATATCATTGTTCCTT------------------------------------------ 1670 ** ************ consensus_11469#2 -------------------------------------------------------- consensus_11469#3 AGGCAAAATAAAATGTATTTTTCCTTAAAAAAAAAAAAAAAAAAAAACAAAAAAGG 673 consensus_11469#0 -------------------------------------------------------- consensus_11469#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||