These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1739 fasta sequence [TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTGTTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTTCTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT-CAGCAGTTGCTATT-GATCT-CAATT-CT-GGTGAGTCTAGAGA-GGTTGAATTCCGT-GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT-GGCCAACCAAAAGA-GGGAGT-ATTTGTTGAAGCAAGATCTGAAT-CAA-GAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG-ATAGT-TGAAGTTGACTTGGACAAGCAACCTCAGATT-CATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA-CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC-TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA-GAGGGCGTGAGGCATAAATTAGCTTCAG-ATT-AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT] [+] EMBL AU056143 [TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTGTTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTTCTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGC TTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATNCACTCCATCCAGCAGTTGCTATTGGATCTCCAATTCCTGGGTGAGTCTAGAGAGGGTTGAATTCCGTGGCAACTCGTGTTGCCTACAGTGCCATGGGGTCTGTAA CCTGCTGACTGGGCCAACCAAAAGAGGGGAGTAATTGGTTGAAGCAAGATCTGAATCCAAGGAGGGTATTATnga ] [+] EMBL AK058273 [ ACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT CAGCAGTTGCTATT GATCT CAATT CT GGTGAGTCTAGAGA GGTTGAATTCCGT GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT GGCCAACCAAAAGA GGGAGT ATTTGTTGAAGCAAGATCTGAAT CAA GAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG ATAGT TGAAGTTGACTTGGACAAGCAACCTCAGATT CATGTTGGTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA GAGGGCGTGAGGCATAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT] [+] EMBL CB681013 [ AAGTATGCTTCTCTGAAGGAAAGGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGTATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTGGCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAACAAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAAATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTTTCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCAT CAGCAGTTGCTATT GATCT CAATT CT GGTGAGTCTAGAGA GGTTGAATTCCGT GCAACTCGTGTTGCCTACAGTGCCATGGGTTCTGTAACCCTGCTGACT GGCCAACCAAAAGA GGGAGT ATTTGTTGAAGCAAGATCTGAAT CAA GAGGTTATTATGAGGAAGCTACTACTGATTCTTTTGGTAGGTTTCGCCTTAGAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGAC ] [+] EMBL CA765154 [ ATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGTTTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACATCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATGTGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTTGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTTGAGTCAGAG ATAGTNTGAAGTTGACTTGGACAAGCAACCTCAGATT CATGTTGCTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAA CAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTTCTGTGATTGCATTGGTCATCAGCATGCCAAGGTTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTC TGCGGCTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAAGGAGGGCGTGAGGCATAAATTAGCTTCAG ATTAAGGTGTTGAAAAAACGGGTACTTACAGGTGATCACGTCAGGAGTAGAAAATAGCCGNTTCTTTGCATTTAANGGGTAATTTTGCAGATAAAAANTGGCAGTCGATATTTATTAACGACTACCAATTTTGATGNCCATGg ] [+] EMBL CF324738 [ TTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTGCAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTACAGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCCATAGATTCGAGTCAGAGCATAGT TGAAGTTGA ] [+] EMBL AU056144 [ cCCTCAGATTCCATGTTGGTCCTCTTAAATATAAACCCGAAGANCGACATCACAAACCAGGAATTAACTCCAGCCCCTGTATTTCCTCTTATTGTCGGAGTTNCCGTGATTCCATTGGTCATCAGCATGCCAAGGCTAAAAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCNTGC CTGCGCCGATAAAAAAGGAGCCAAGAAAGACAATCATGAGAAA GAGGGCGTGAGGCATAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCAaaaa] [+] EMBL AU063235 [ TAAATTAGCTTCAG ATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTNCTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAAaaa ] [+] EMBL AU063140 [ TAAATTAGCTTCAGTATT AGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTTTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCAGTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACACGTTGGCATTTGCTTCGGGCATAGTTACTGGCTTGTACTTTGGCATTAA ] consensusID : consensus_11478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [TTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316428 [TTCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGACTACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTGTGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11478#0 TCCTCTTTTATCCATCAAGTCAGCAGTTTTCGGTGGCTGTGAATGGATGCCAATACACTG 60 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TTCCTTCAATAACCGCTAAAACAGGTCTATACCTTGAAGGATCAGTGTCGCCTGCAATTT 120 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 CTGATGTTGACATCAAGATCCTAGCAGCAGGGAAGAGCAAGTATGCATCTCTGAAGGAAA 180 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 GGGACATAGCAATGGAGACAAAGACAAATTCTGAGGGATCATTCTTTGCAGGTCCCCTGT 240 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 ATGATGATATTGGATATACGGTGGAAGCTTCAAAGGCTGGCTATCATCTAAAGCAAACTG 300 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 GCCCGTACACCTTTTCTTGTCAGAAGCTTGGTCAGATATTGGTACGGATTTATGGTGAAC 360 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 AAGATGCCGAGCTTTTACCTTCTGTATTGCTGTCTTTGAGTGGTGAAGAAGGCTACAGAA 420 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 ATAATTCTATTAGTGGTTCTGGTGGAACTTTCAGCTTTGGTAACTTATTTCCAGGAAGTT 480 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TCTATCTCCGACCTCTTCTCAAGGAATATAAATTCACTCCATCAGCAGTTGCTATTGATC 540 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TCAATTCTGGTGAGTCTAGAGAGGTTGAATTCCGTGCAACTCGTGTTGCCTACAGTGCCA 600 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TGGGTTCTGTAACCCTGCTGACTGGCCAACCAAAAGAGGGAGTATTTGTTGAAGCAAGAT 660 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 CTGAATCAAGAGGTTATTATGAGGAAGCTACTACTGATCCTTTTGGTAGGTTTCGCCTTA 720 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 GAGGACTCGTCCCTGGCTCAATTTATTCTGTAAGAGTGGTTGCAAAAGATGATCACAGGT 780 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TTGCAGCAGTTGAGCGTGCTTCACCTGAATATGTGTCAATTGATGTTGGTCAGGATGACA 840 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TCTCTGGTATTGATTTTGTTGTTTTTGAAAGACCGGAATCAACAATTTTGAGTGGCCATG 900 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TGGAAGGAGATGATCTTGACATGTTGCAACCACAACTGTCTGTTGAAATTAGATCAGCTG 960 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 CAGACCCTTCTAGAATAGAATCTGTACTCCCTGTTCCTCTCTCGTACTACTTCGAAGTAC 1020 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 AGAATTTGCCAAAAGGAAAGCATCTTGTTCAGCTTCGTTCTGGTCTTCCATCACATACCC 1080 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 ATAGATTTGAGTCAGAGATAGTTGAAGTTGACTTGGACAAGCAACCTCAGATTCATGTTG 1140 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 GTCCTCTTAAATATAAAACCGAAGAGCGACATCACAAACAGGAATTAACTCCAGCCCCTG 1200 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TATTTCCTCTTATTGTCGGAGTTTCCGTGATTGCATTGGTCATCAGCATGCCAAGGCTAA 1260 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 AAGACTTGTACCAAAGTGCTGTGGGAATGACTACCCTAGGTTCTGCGGCTGCGCCGATAA 1320 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 AAAAGGAGCCAAGAAAGACAATCATGAGAAAGAGGGCGTGAGGCATAAATTAGCTTCAGA 1380 consensus_11478#1 ------------------------------------------------------------ consensus_11478#0 TTAGGTGTTGAAAAAACGGGTACTTACAGTTGATCACGTCAGGAGTAGAAAATAGCCGTT 1440 consensus_11478#1 -----------------------------------------------------------T 1 * consensus_11478#0 TCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGAC 1500 consensus_11478#1 TCTTTGCATTTAAGGGGTAATTTTGCAGATAAAAATTGGCAGTCGATATTTATTAACGAC 61 ************************************************************ consensus_11478#0 TACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTG 1560 consensus_11478#1 TACAAATTTTGATGCCAATGTTGGGCATGTAGTCATTCGAAATGTTGTACGATAGTACTG 121 ************************************************************ consensus_11478#0 TGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCTATCTTTCCTCAGCTCA 1620 consensus_11478#1 TGTACAGTTTTCAGGTGCCAGATGAAGTTTTGAGAGCCTGGTCAAAAAAAAAAAAAAAAA 181 ******************************************* * * * consensus_11478#0 GTATATTTGTTTAGTTTTAGTGTCTGGTCTCGTTTATGCTACTATGTTGTAGATAAACAC 1680 consensus_11478#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 210 * * * * consensus_11478#0 GTTGGCATTTGCTTCGGGCATAGTTACTGCCTTGTACTTTGGCATTAATTTTTCATGTT 1739 consensus_11478#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||