These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1028 fasta sequence [AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA] [+] EMBL AK064650 [AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA] consensusID : consensus_1148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC] [+] EMBL CA754459 [AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1148#0 AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 60 consensus_1148#1 ---------------------AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 39 *************************************** consensus_1148#0 AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 120 consensus_1148#1 AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 99 ************************************************************ consensus_1148#0 GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 180 consensus_1148#1 GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 159 ************************************************************ consensus_1148#0 GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 240 consensus_1148#1 GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 219 ************************************************************ consensus_1148#0 GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 300 consensus_1148#1 GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 279 ************************************************************ consensus_1148#0 GAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 360 consensus_1148#1 GAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 339 ************** ********************************************* consensus_1148#0 GCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAA 420 consensus_1148#1 GCTCGCTTCTGGGCGACCTACTTCGACAGCACG--------------------------- 372 ********************************* consensus_1148#0 TCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGAT 480 consensus_1148#1 ------------------------------------------------------------ consensus_1148#0 CGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 540 consensus_1148#1 -----------------------------TTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 403 ******************************* consensus_1148#0 CGACGACGGCGGAGC-AGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTG 599 consensus_1148#1 CGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTG 463 ******* ******* *************************** **************** consensus_1148#0 CTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTC 659 consensus_1148#1 CCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTC 523 * * *************** ***** ************************** ***** consensus_1148#0 GGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTG 719 consensus_1148#1 GGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTG 583 ****************************** ** ************************* consensus_1148#0 GCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGG 779 consensus_1148#1 CCCGGC------------------------------------------------------ 589 ***** consensus_1148#0 TTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCAC 839 consensus_1148#1 ------------------------------------------------------------ consensus_1148#0 TACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATC 899 consensus_1148#1 ------------------------------------------------------------ consensus_1148#0 TGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATA 959 consensus_1148#1 ------------------------------------------------------------ consensus_1148#0 TTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGG 1019 consensus_1148#1 ------------------------------------------------------------ consensus_1148#0 AGAGCAAAA 1028 consensus_1148#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||