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Oryza sativa
cluster # 1148 cluster # 1148       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1148#0 length = 1028 sequences # 1  
consensus_1148#1 length = 589 sequences # 1  

consensusID : consensus_1148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1028
fasta sequence
                              [AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA]

[+] EMBL AK064650             [AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAATCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGATCGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGCTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGGCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGTTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACTACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCTGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATATTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGAGAGCAAAA]


>consensus_1148#0 AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC GAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC GCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAA TCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGAT CGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGG CGACGACGGCGGAGCAGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTGC TGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTCG GGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTGG CCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGGT TCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCACT ACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATCT GCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATAT TTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGGA GAGCAAAA



consensusID : consensus_1148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence
                              [AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC]

[+] EMBL CA754459             [AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTACTTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC]


>consensus_1148#1 AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGAAGAGGAGGAGGAGGAGGAGGA GGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTACGCTATGCGCGCGAAAATCGCG CTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAGGACCTCTTCGGCAAGAGCGAG CTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCCGTCCTCATCCATGCCGGCCGG CCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGACGAGGCCTGGCCCGGCGCCGCG CCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACCGCTCGCTTCTGGGCGACCTAC TTCGACAGCACGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGGCGACGACTGCGGAGCCA GAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTGCCTGGACGAGCGTTCGT GGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTCGGGCTCGTCGACGTCGT GGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTGCCCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1148#0      AAAACCGATCCAGACAACAACAGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 60
consensus_1148#1      ---------------------AGCATCATACTCACACAGTTCGCGGCAGCAATGGCGGGA 39
                                           ***************************************

consensus_1148#0      AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 120
consensus_1148#1      AGAGGAGGAGGAGGAGGAGGAGGCGAGCTGCAGCTGCTGGGCACATGGTACAGCCCGTAC 99
                      ************************************************************

consensus_1148#0      GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 180
consensus_1148#1      GCTATGCGCGCGAAAATCGCGCTGGGGCTCAAGGGCCTGAGCTACGAGTACATCGAGCAG 159
                      ************************************************************

consensus_1148#0      GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 240
consensus_1148#1      GACCTCTTCGGCAAGAGCGAGCTCCTGCTCAAGAGCAACCCGGTGCACAAGAAGGTCCCC 219
                      ************************************************************

consensus_1148#0      GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 300
consensus_1148#1      GTCCTCATCCATGCCGGCCGGCCGGTGTGCGAGTCGCGCGTGGTTCTCGAGTACGTCGAC 279
                      ************************************************************

consensus_1148#0      GAGGCCTGGCCCGGGGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 360
consensus_1148#1      GAGGCCTGGCCCGGCGCCGCGCCGCCGCTCCTCCCGGCCGACCCCCACGACCGCGCCACC 339
                      ************** *********************************************

consensus_1148#0      GCTCGCTTCTGGGCGACCTACTTCGACAGCACGGTAATCGATGGCATCTTCCTGAAGAAA 420
consensus_1148#1      GCTCGCTTCTGGGCGACCTACTTCGACAGCACG--------------------------- 372
                      *********************************                           

consensus_1148#0      TCAACCTTAGATAGATAGCAACGTTCATGTCGGTGATTGAGAAATCAATATTAGAGAGAT 480
consensus_1148#1      ------------------------------------------------------------
                                                                                  

consensus_1148#0      CGACATTTTTGTTTTGATACTGTATTAAGTTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 540
consensus_1148#1      -----------------------------TTCTTCCCGCCGTGGAGGGCGCTGATGAGGG 403
                                                   *******************************

consensus_1148#0      CGACGACGGCGGAGC-AGAGAGCGGAGGCCTTCATGAACGCCGTACCTCAGGTGGAGGTG 599
consensus_1148#1      CGACGACTGCGGAGCCAGAGAGCGGAGGCCTTCATGAACGCCGGACCTCAGGTGGAGGTG 463
                      ******* ******* *************************** ****************

consensus_1148#0      CTGGAGCGAGCGTTCGTGGAGTGCTCCAAGGGGAAGGCGTTCTTCGGCGGCGACGCCGTC 659
consensus_1148#1      CCTGGACGAGCGTTCGTGGAGCGCTCCCAGGGGAAGGCGTTCTTCGGCGGCGACCCCGTC 523
                      *  *  *************** ***** ************************** *****

consensus_1148#0      GGGCTCGTCGACGTCGTGGTCGGCGGCTTCGTGGTGTGGTTCAAGGTGGTGGACGAGGTG 719
consensus_1148#1      GGGCTCGTCGACGTCGTGGTCGGCGGCTTCCTGTGGTGGTTCAAGGTGGTGGACGAGGTG 583
                      ****************************** **  *************************

consensus_1148#0      GCCGGCTCCAGCCTCCTCGACGAGGCCAAGTTCCCGGGCCTGGCGGCGTGGGCGGAGCGG 779
consensus_1148#1      CCCGGC------------------------------------------------------ 589
                       *****                                                      

consensus_1148#0      TTCTTGGCGGTGGACGCCGTCCGGGAGGCGATGCCCGACGCCGGGAAGCTCCTGGAGCAC 839
consensus_1148#1      ------------------------------------------------------------
                                                                                  

consensus_1148#0      TACAAGGGATTTCTGGCTAAATTGGCTTCGCCAGCTGGTTCTACCTAATGGCAATCTATC 899
consensus_1148#1      ------------------------------------------------------------
                                                                                  

consensus_1148#0      TGCCTTGCTCGCCTGCTTTGACGATGAAGAAGTTGTTTGGTACTGTGTCATGTGAAAATA 959
consensus_1148#1      ------------------------------------------------------------
                                                                                  

consensus_1148#0      TTTTGTTAGTCTCTGTTGAGCGGTGTTCAGAATGCAAATGTGTACATCTTGAATAAAAGG 1019
consensus_1148#1      ------------------------------------------------------------
                                                                                  

consensus_1148#0      AGAGCAAAA 1028
consensus_1148#1      ---------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)