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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11483#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1105 fasta sequence
[ATGTGGAAAAAATTAAAATAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAGAAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCT-CCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAATTGAGTTAAAAAAAGTCAATATGTGTGCCCCCAAAAAAAAAAA]
[+] EMBL AK071147 [ATGTGGAAAAAATTAAAATAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAGAAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCT CCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAATTGAGTT ]
[-] EMBL CF308970 [ ACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCNTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCT CCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAAa ]
[-] EMBL CF311742 [ CATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCT CCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAAAAAAAAAAAAAAAA ]
[-] EMBL CF318797 [ GTTGGAAGAGGCCAGCTCCCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACACCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCGAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAATTGAGTTGTCTGCAGTCAATATGTGTGCCCCCAAAAAAAAAAA]
consensusID : consensus_11483#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1056 fasta sequence
[CATGGACTGAGGGAGTAGAAAAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAG-AAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAGATTGAGTTGTCTGCAAAAAAAAA]
[+] EMBL CF308969 [CATGGACTGAGGGAGTAGAAAAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAG AAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTG ]
[+] EMBL CF318796 [ ATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGAGGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAG AAACCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATG ]
[+] EMBL AU070158 [ aTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGTA GTAGGAGGGA GGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAA GAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGG CTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAG AAGCCAGGTCTGCCTGTCCTTCT ]
[+] EMBL CF311741 [ CGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGTAGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCTGGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTTCCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCACCTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTTCATTGCTTGGGTGGAGAAGCATCCAAATCGAAG AAGCCAGGTCTGCCTGTCCTTCTTTGACGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACG ]
[-] EMBL CA759997 [ atTCCAAATCGAAGAAACCCAGGTCTGCCTGTCTTTC TTGACGAAAAGAACAAAAACCCAAGCTGGTTCCCCAGCAAAACTGAGAGGATTTACTGGGAATAGTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAAAGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCTGGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGACCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGTCCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCAGCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGTCATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAACGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTGTTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAGATTGAGTTGTCTGCAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11483#0 ATGTGGA---AAAAATTAAAATAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGA 57
consensus_11483#1 -CATGGACTGAGGGAGTAGAAAAAAATCGGATTCTTCTCTTCTCGTGGGGATTCCGGCGA 59
**** * * ** ** **************************************
consensus_11483#0 GGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGT 117
consensus_11483#1 GGATTTCGGCGAGCAGGGGGGCGATCGATCGAGAGCGTCCGCCGCCGCCGCCGCGGAGGT 119
************************************************************
consensus_11483#0 AGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCT 177
consensus_11483#1 AGGAGGGAGGGGAGAGAGACCGGTCGCGATGAACTGCGAGACGTGCCAGCTGAAGGAGCT 179
************************************************************
consensus_11483#0 GGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTT 237
consensus_11483#1 GGAGCTGGAACAGGATGAGATCAAAGATGTGCTTCGATGCATTTTACATACGATCTTCTT 239
************************************************************
consensus_11483#0 CCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCAC 297
consensus_11483#1 CCACCGAACTCTTACTCTTGTTCGGCCTAAAGATGTTGACTGCGATCTCTTTGAGATCAC 299
************************************************************
consensus_11483#0 CTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTT 357
consensus_11483#1 CTATGTTCAATGCGGACTTCCTGACTTAGAAAAGGAGGTGGATGAAAAGATCAACCAGTT 359
************************************************************
consensus_11483#0 CATTGCTTGGGTGGAGAAGCATCCAAATCGAAGAAGCCAGGTCTGCCTGTCCTTCTTTGA 417
consensus_11483#1 CATTGCTTGGGTGGAGAAGCATCCAAATCGAAGAAGCCAGGTCTGCCTGTCCTTCTTTGA 419
************************************************************
consensus_11483#0 CGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACA 477
consensus_11483#1 CGAAAAGAACAAAAACCCAAGCTGGTTCACCAGCAAAACTGAGAGGATTTACTGGGAACA 479
************************************************************
consensus_11483#0 GTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAA 537
consensus_11483#1 GTGGTTCATCAATTTGCATGTCATAAGCCCTAAAGGACATGGAAAATCACGTAGCTCCAA 539
************************************************************
consensus_11483#0 AGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCT 597
consensus_11483#1 AGCATCAACAAGTATTCGAGGGAAAGCGTTGGAAGAGGCCAGCTCCAAGCGTGCTGCGCT 599
************************************************************
consensus_11483#0 GGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGA 657
consensus_11483#1 GGGGTTGCTGATCCAGGAAGTCCTTTTCCAGATCATCAACTTCGCCAATGAGAAAAAAGA 659
************************************************************
consensus_11483#0 CCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAGGTGACA 717
consensus_11483#1 CCATATTCCTCCAATCTCCGATAGGATATTCAATCACGAGATCTCGATCCCCAG------ 713
******************************************************
consensus_11483#0 CCTTTTCCTTGGACGTGTTGACAGCTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGT 777
consensus_11483#1 ------------------------CTCTTCTGATTCTGTATTCGGGTGGAACGCCGACGT 749
************************************
consensus_11483#0 CCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCA 837
consensus_11483#1 CCTTAGAAGAGTGTTGAATAGTTGAACTGAAGACGGTGATCATCAAGTACGCCATGTCCA 809
************************************************************
consensus_11483#0 GCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGT 897
consensus_11483#1 GCGTTGGGATAGAAGATAACCCCCTATGTGGTCGTTCTGTCAAAGATGTCAAGCCATTGT 869
************************************************************
consensus_11483#0 CATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAA 957
consensus_11483#1 CATGAACAGTATCATATTGTACAGAATAATTTAGGTAATAATAGAACAGACAGAAACCAA 929
************************************************************
consensus_11483#0 CGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTG 1017
consensus_11483#1 CGATTTTACTCACTGGAGATGTAAATATTTCCCTTGTTAATCTGTGACCAAAAGCAGTTG 989
************************************************************
consensus_11483#0 TTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAAATTGAGTTAAAAAAAG 1077
consensus_11483#1 TTCCTAACTAAAAACTCATGCTGGCAAATCTTACTATGAGAGAGATTGAGTTGTCTGCAA 1049
******************************************* ******** *
consensus_11483#0 TCAATATGTGTGCCCCCAAAAAAAAAAA 1105
consensus_11483#1 AAAAAAA--------------------- 1056
** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||