|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1433 fasta sequence
[TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA-GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG-AGCTTGTGGATCGTGCCCAAGCTCGC-TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAATAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT]
[+] EMBL CB629842 [TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGATATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTTCTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTATTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGATTGAATGTCCAAGGTTGCGGCCTATGCTCGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCC ATCACCAGCGACCACCGCTAGGTGaggctgttg ]
[+] EMBL AK071874 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTG ]
[+] EMBL AU172472 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTG ]
[+] EMBL AB096013 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTCGC TGATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCTGTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAGGTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATT ]
[+] EMBL AU172662 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAAGCTTGTGGATCGTGCCCAAGCTCGCTTGATCACGATCAAGAAGGGCA ]
[+] EMBL AU182561 [ TGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCGACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGNTAGTTGTTGGAGCCATTGCCGGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTTCTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGA GGGGATGTTGCCCTTCATGAAATTGCCGGGAATGTGGTGAGGCTGAAGCTTCAAGG AGCTTGTGGATCGTGCCCAAGCTC ]
[+] EMBL AU172473 [ GGTGGTGGCCTCCAGTTTCTCATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACTGTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAATTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAACACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA ]
[-] EMBL CB629841 [ TCCATCCATCCAAATCGTCCAATTATTGTCATAGTGTGAAGAATATTTGTGTGCCACCCCTTTCAAGCAGCACATTTGCAACCCTGTACAGAAAATTGAGGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGAGTTGCCCATCTTTAGTCAGCATTCAGCCCAGGGATCAGATATATCATATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTTTTGAAAGAAAGATGGAAAAGTGTGTTTTTTGGTGGAATTTGGGAGTTATTTTAACCCATCGTAAACAACAGCCCACGTTGACTTAAATTTAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAAACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATGTTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAGAAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAGAAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT]
consensusID : consensus_11503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 235 fasta sequence
[GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU182562 [GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANAGTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCTAGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCTTGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11503#0 TAGGCGACGCCACACCTCTTGCATTTGTCTTTTTGGCGATTCCTTCGATCCTTACTTGAT 60
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ATAAACCAACCGAGCTGCCCGCCTGGTTCTTGCATTGCATGAGAAACGCCTAGAGATCTT 120
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 CTAGCTAGCTCCACAAGATGATGAGTTAGACGACCTGGATTCGAAAGCTCACCCCTTCTA 180
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 TTTATTTGATATTAGATCATTCCCTAATATTTGCCCTTTTTTTTTCTTGCATTGCATGAT 240
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 TGAATGTCCAAGGTTGCGGCCTATGCTTGGTCGTCATGCCGGAGCAGCTCCTCTCCGGCG 300
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ACAAGATTGGTCGCCGCCCCCAATCACCAGCGACCACCGCTAGTTGTTGGAGCCATTGCC 360
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 GGCCTGGATCCGGTTACCGCGGTGCAGCTGCCATTAACCGCTGGGAACGTCGAGTCTGTT 420
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 CTAGATCAAGTGCGCCCTTACCTGACGGCAGATGGAGGGGATGTTGCCCTTCATGAAATT 480
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 GCCGGGAATGTGGTGAGGCTGAAGCTTCAAGGAGCTTGTGGATCGTGCCCAAGCTCGCTG 540
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ATCACGATCAAGAGGGGCATCGAGCGCCGCTTGATGGAGAAAATACCAGATGTTGCTGCT 600
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 GTTGAACCTGTTACAGATAAGGAGACTGGGCTTGAGCTGAATGAAGAGAATGTTGAGAAG 660
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 GTTCTCAATGAAATCAGGCCATACCTTGCTGGCACGGGAGGTGGTGGCCTCCAGTTTCTC 720
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ATGATCAAGGGCCCCATTGTGAAAGTTCGGCTCACAGGCCCTGCTGCAGTTGTGAGGACT 780
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 GTTCGGATTGCCGTGAGTAAGAAGCTCCGAGAGAAGATTCCATCCATCCAAATCGTCCAA 840
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 TTATTGTCATAGTCTGAAGAATATCTGTGTGCCACCCCTCTCAAGCAGCACATCTGCAAC 900
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ACTGTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCAGAAGCCTCACGAAGA 960
consensus_11503#1 ---GTACAGAAAATTGATGTAAATTTGTAAATTGGTTGCATTTCANAAGCCTCACNAANA 57
****************************************** ********* ** *
consensus_11503#0 GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCATATACTATCTGTCT 1020
consensus_11503#1 GTTGCCCATCTTTAGTCAGCATTCAGCACAGGGATCAGATATATCANATACTATCTGTCT 117
********************************************** *************
consensus_11503#0 AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAAGAAAGATGGAAAAGTGTGTTTCT 1080
consensus_11503#1 AGATCTGTAATGAAGTTTTGATCTGTTCCTCTTGAAANAAANATGGAAAAGTGTGTTTCT 177
************************************* *** ******************
consensus_11503#0 TGGTGGAATTCTGGAGTTATTTTAACCCATCGTAAACAACAGCACACGTTGACTTAAAAA 1140
consensus_11503#1 TGGTGGAATTCTGGAGTTATTTTAACCCATCGTNAACNAAAAAAAAAAAAAAAAAAAA-- 235
********************************* *** * * * * * ***
consensus_11503#0 TAACTTGCCTTTTCTCTTTTTAATTTTGGGCAGCTCTGCCAAAGAGTGCAAATTAGAAAA 1200
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 ACGTAAACTTTTGTGTATCAAAGGATTTTTTGAAGCATGGAAAACCCGGGGGAACAGATG 1260
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 TTTATCAAAATTTACAGGAACTTTTGAGTTTTTTGACTTAGAGATTCGTTTTGTGTACAG 1320
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 AAAGGCATGTCGCCAATGTAATTTTGTGTGAATGGCTTTGTGCTGTGCAATTTTGGGAAG 1380
consensus_11503#1 ------------------------------------------------------------
consensus_11503#0 AAATTAAAGCATAAAAAGAAATGGGGGGGTATTCCAGGTTTCTCCCTGCCCAT 1433
consensus_11503#1 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||