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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11516#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1640 fasta sequence
[TCATCGCCATTGCCATCCAAAGCAAAGAAGAGAGCCACCCTGCAGACACAGTACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTGCTGGTGCTCGCGTGCGTCGTCGTCGTCGTCATCCATGGCCTAGGAGAGGCGGAGGCCTTGGGAGGAGGGGGCGGCTTCGTGAGGGCGCAGGGGACACGGTTCGTGCTCGACGGCAACCCGTACTACGCCAACGGGTTCAACGCCTACTGGCTCATGTTGCTGGCCGCCGACCCGTCGCAGAGGGGCAAGGTCAGCGCCGCGCTCGGCGAGGCCGCCGGGCACGGCCTCACCGTCGCCAGGACGTGGGCGTTCAGCGACGGCGGCGGCGGCAACGCGCTGCAGTTGTCCCCCGGCAACTACAACGAGAACACCTTCAAGGGTTTGGATTTTGTGCTGTCTGAGGCTAGGAAGTATGGGATCAAGGTGATACTGAGCCTTGTGGACAACTACGACTCTTTTGGCGGGAGGAAGCAGTATGTGAACTGGGCAAGAGCGCAGGGGCAGGGCATTGGGTCCGACGATGAGTTCTTCACCAACCCTGTTGTTAAGGGCTTCTACAAGAACCACGTGAAGACGGTGTTGACGAGGAAGAACACGATCACGGGGGTGGCGTACAGGGACGACCCGACCATCCTGGCGTGGGAGCTGATGAACGAGCCGAGGTGCCAGTCCGACCTGTCCGGCCGCACCGTCCAGTCGTGGATCACCGAGATGGCGGCGCACGTCAAGTCCATCGACCGCAACCACATGCTGGAGGTCGGCCTCGAGGGCTTCTACGGCGCCTCCTCGCCGTCCCGCATCGCCGCCGTCAACCCCTCCGGCTACCAGCTCGGCACCGACTTCATCGCCAACAACCAGGTCCCCGGCATCGACTTCGCCACCGTCCACTCCTACCCCGACCAATGGTTGTCGGGCAAGGACGACCAGGCGCAGCTGGGGTTCATGGGGAGGTGGCTGGACGCGCACATCGCGGACGCGCTCTACGGCACGGTGTACGCCAAGATCTACGAGTCGGCGCGGAGGGGCGGCGCCACGGTGGGGGGCCTCTTCTGGCAGCTCCTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACG-AGGTCGTCTTCGGTGAGACGCCGTCCACCACGGGCGTCATCACCACG-AACAGCCGGCGGCTGCGCTTCCTCAGCAAGGCGTTCGCGCGGGCCAGGCAGGCCCAGCCGGCGAGGGGGAAGGGCCGACACAACGGCGGGAAATAGAGATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTTGGTTTGATTTGTGTGTTTTACTTCATGTGTGGGAGGTACGTGAGTGTGAGTTGATGGCTCCTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCATCCTTCTTGGTGCCTTGGGAGGACGTGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACTCTGTGGTGAAGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTACTTACGTAAAAAACACTAGTATAATACTCCTATATGAATGATG]
[+] EMBL AK071667 [TCATCGCCATTGCCATCCAAAGCAAAGAAGAGAGCCACCCTGCAGACACAGTACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTGCTGGTGCTCGCGTGCGTCGTCGTCGTCGTCATCCATGGCCTAGGAGAGGCGGAGGCCTTGGGAGGAGGGGGCGGCTTCGTGAGGGCGCAGGGGACACGGTTCGTGCTCGACGGCAACCCGTACTACGCCAACGGGTTCAACGCCTACTGGCTCATGTTGCTGGCCGCCGACCCGTCGCAGAGGGGCAAGGTCAGCGCCGCGCTCGGCGAGGCCGCCGGGCACGGCCTCACCGTCGCCAGGACGTGGGCGTTCAGCGACGGCGGCGGCGGCAACGCGCTGCAGTTGTCCCCCGGCAACTACAACGAGAACACCTTCAAGGGTTTGGATTTTGTGCTGTCTGAGGCTAGGAAGTATGGGATCAAGGTGATACTGAGCCTTGTGGACAACTACGACTCTTTTGGCGGGAGGAAGCAGTATGTGAACTGGGCAAGAGCGCAGGGGCAGGGCATTGGGTCCGACGATGAGTTCTTCACCAACCCTGTTGTTAAGGGCTTCTACAAGAACCACGTGAAGACGGTGTTGACGAGGAAGAACACGATCACGGGGGTGGCGTACAGGGACGACCCGACCATCCTGGCGTGGGAGCTGATGAACGAGCCGAGGTGCCAGTCCGACCTGTCCGGCCGCACCGTCCAGTCGTGGATCACCGAGATGGCGGCGCACGTCAAGTCCATCGACCGCAACCACATGCTGGAGGTCGGCCTCGAGGGCTTCTACGGCGCCTCCTCGCCGTCCCGCATCGCCGCCGTCAACCCCTCCGGCTACCAGCTCGGCACCGACTTCATCGCCAACAACCAGGTCCCCGGCATCGACTTCGCCACCGTCCACTCCTACCCCGACCAATGGTTGTCGGGCAAGGACGACCAGGCGCAGCTGGGGTTCATGGGGAGGTGGCTGGACGCGCACATCGCGGACGCGCTCTACGGCACGGTGTACGCCAAGATCTACGAGTCGGCGCGGAGGGGCGGCGCCACGGTGGGGGGCCTCTTCTGGCAGCTCCTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACG AGGTCGTCTTCGGTGAGACGCCGTCCACCACGGGCGTCATCACCACG AACAGCCGGCGGCTGCGCTTCCTCAGCAAGGCGTTCGCGCGGGCCAGGCAGGCCCAGCCGGCGAGGGGGAAGGGCCGACACAACGGCGGGAAATAGAGATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTTGGTTTGATTTGTGTGTTTTACTTCATGTGTGGGAGGTACGTGAGTGTGAGTTGATGGCTCCTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCATCCTTCTTGGTGCCTTGGGAGGACGCGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACTCTGTGGTGAAGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTACTTACGTACTTCACACTAGTATAATACTCCTATATGAATGATG]
[+] EMBL AU064482 [ GCCATCCAAAGCAAAGAAGAGAGCCACCCTGCAGACACAGTACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTGCTGGTGCTCGCGTGCGTCGTCGTCGTCGTCATCCATGGCCTAGGAGAGGCGGAGGCCTTGGGAGGAGGGGGCGGCTTCGTGAGGGCGCAGGGGACACGGTTCGTGCTCGACGGCAACCCGTACTACGCCAACGGGTTCANCGCCTACTGGCTCATGTTGCTGGCCGCCGACCCGTCGCAGAGGGGCAAGGTCAGCGCCGCGCTCGGCGAGGCCGCCGG ]
[+] EMBL C71866 [ nCCATCCAAAGCAAAGAAGAGAGCCACCCTGCAGACACAGTACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTGCTGGTNCTCGCNTGCNTCGTCGTCGTCGTCATCCATGGCCTAGGAGAGGCGGAGGCCTTNGNAGGAGGGGGCGGCTTCGTGAGGGCGCAGGGGACACGGTTCGTNCTCGACGGCAACCCGTACTACGGCAACGGGTTCAACGNCTACTG ]
[+] EMBL OSS1638A [ AAGACGGTGTTGACGAGGAAGAACACGATCACGGGGGTGGCGTACAGGGACGACCCGACCATCCTGGCGTGGGAGCTGATGAACGAGCCGAGGTGCCAGTCCGACCTGTCCGGCCGCACCGTCCAGTCGTGGATCACCGAGATGGCGGCGCACGTCAAGTCCATCGACCGCAACCACATGCTGGAGGTCGGCCTCGAGGGTTTCTACGGCG CTCCTCGCCGTTCCGa ]
[+] EMBL OSS1457A [ AAGACGGTGTTGACGAGGAAGAACACGATCACGGGGGTGGCGTACAGGGACGACCCGACCATCCTGGCGTGGGAGCTGATGAACGAGCCGAGGTGCCAGTCCGACCTGTTCGGCCGCACCGTCCAGTCGTGGATCAACGAGATGGCGGCGCACGTCAAGTCCATCGACCGCAACCACATGCTNGAGGTCGGCCTCGAGGGCTTCTACGGCGGCTTCTCGCCGTCC ]
[+] EMBL CA999436 [ GACGCGCTCTACGGCACGGTGTACGCCAAGATCTACGAGTCGGCGCGGAGGGGCGGCGCCACGGTGGGGGGCCTCTTCTGGCAGCTCCTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACG AGGTCGTCTTCGGTGAGACGCCGTCCACCACGGGCGTCATCACCACG AACAGCCGGCGGCTGCGCTTCCTCAGCAAGGC ]
[+] EMBL AU082685 [ AGCTCNTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACGAAGGTCGTCTTCGGTGAGACGCCGTCCACCACGGGCGTCATCACCACG AACAGCCGGC GNTGCGCTTCCTCAGCAAGGCGTTCGCGCGGGCCAGGCAGGCCCAGCCGGCGAGGGGGAAGGGCCGACACAACGGCGGGAAATAGAGATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTTGGTTTGATTTGTGTGTTTTACTTCATGTGTGGGAGGTACGTGAGTGTGAGTTGATGGCTCCTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCATCCTTCTTGGTGCCTTGGGAGGACGTGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACTCTGTGGTGAAGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTACTTACGTAAAAA ]
[+] EMBL AU033030 [ CCACGGGCGTCATCACCACGAAACAGCCGTCGTTTGCGCTTCCTCAGCAAGGCGTTCGCGCGGNCCAGGCAGGCCCAGCCGGCGAGGGGGAAGGNCCGACACAACGGCGGGAAATAGAGATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTTGGTTTGATTTGTGTGTTTTACTTCATGTGTGGGAGNTACGTGAGTGTGAGTTGATGGCTCCTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCATCCTTCTTGGTGCCTTGGGAGGACGTGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACTCTGTGGTGAAGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTACTTACGTAAAAAA ]
consensusID : consensus_11516#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[NCGCCCANGCGTCCGCTTCANCTCATCGCCATTNCCATCCAAAGCAAAGAAGAGAGCCANCCTGCAGANACAGTACGCACACGCAGAGAGAGAGAGANANAGAGAGAAANCCAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTTCTGGTNCTCGCGTGCGTTGTCGTCGTCGTCATCCATGGGCTAGGAGANGCGGAGGNCTTNGGANGAGGGGGCGGCTTCGTGANGGCCCAGGGGACACGGTTCGTNCTCGACGGCAACCCGTACTACGCCAACGGGGTNAACGCCTACTGGCTCATGT]
[+] EMBL AU069983 [NCGCCCANGCGTCCGCTTCANCTCATCGCCATTNCCATCCAAAGCAAAGAAGAGAGCCANCCTGCAGANACAGTACGCACACGCAGAGAGAGAGAGANANAGAGAGAAANCCAGGGATGAGGCTTCTCGGAGCTCATCGTGCTGCTCTTCTGGTNCTCGCGTGCGTTGTCGTCGTCGTCATCCATGGGCTAGGAGANGCGGAGGNCTTNGGANGAGGGGGCGGCTTCGTGANGGCCCAGGGGACACGGTTCGTNCTCGACGGCAACCCGTACTACGCCAACGGGGTNAACGCCTACTGGCTCATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11516#0 ----------------------TCATCGCCATTGCCATCCAAAGCAAAGAAGAGAGCCAC 38
consensus_11516#1 NCGCCCANGCGTCCGCTTCANCTCATCGCCATTNCCATCCAAAGCAAAGAAGAGAGCCAN 60
*********** *************************
consensus_11516#0 CCTGCAGACACAGTACGCACACGCAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGATGA 98
consensus_11516#1 CCTGCAGANACAGTACGCACACGCAGAGAGAGAGAGANANAGAGAGAAANCCAGGGATGA 120
******** **************************** * ******* * * ********
consensus_11516#0 GGCTTCTCGGAGCTCATCGTGCTGCTCTGCTGGTGCTCGCGTGCGTCGTCGTCGTCGTCA 158
consensus_11516#1 GGCTTCTCGGAGCTCATCGTGCTGCTCTTCTGGTNCTCGCGTGCGTTGTCGTCGTCGTCA 180
**************************** ***** *********** *************
consensus_11516#0 TCCATGGCCTAGGAGAGGCGGAGGCCTTGGGAGGAGGGGGCGGCTTCGTGAGGGCGCAGG 218
consensus_11516#1 TCCATGGGCTAGGAGANGCGGAGGNCTTNGGANGAGGGGGCGGCTTCGTGANGGCCCAGG 240
******* ******** ******* *** *** ****************** *** ****
consensus_11516#0 GGACACGGTTCGTGCTCGACGGCAACCCGTACTACGCCAACGGGTTCAACGCCTACTGGC 278
consensus_11516#1 GGACACGGTTCGTNCTCGACGGCAACCCGTACTACGCCAACGGGGTNAACGCCTACTGGC 300
************* ****************************** * *************
consensus_11516#0 TCATGTTGCTGGCCGCCGACCCGTCGCAGAGGGGCAAGGTCAGCGCCGCGCTCGGCGAGG 338
consensus_11516#1 TCATGT------------------------------------------------------ 306
******
consensus_11516#0 CCGCCGGGCACGGCCTCACCGTCGCCAGGACGTGGGCGTTCAGCGACGGCGGCGGCGGCA 398
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 ACGCGCTGCAGTTGTCCCCCGGCAACTACAACGAGAACACCTTCAAGGGTTTGGATTTTG 458
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TGCTGTCTGAGGCTAGGAAGTATGGGATCAAGGTGATACTGAGCCTTGTGGACAACTACG 518
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 ACTCTTTTGGCGGGAGGAAGCAGTATGTGAACTGGGCAAGAGCGCAGGGGCAGGGCATTG 578
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 GGTCCGACGATGAGTTCTTCACCAACCCTGTTGTTAAGGGCTTCTACAAGAACCACGTGA 638
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 AGACGGTGTTGACGAGGAAGAACACGATCACGGGGGTGGCGTACAGGGACGACCCGACCA 698
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TCCTGGCGTGGGAGCTGATGAACGAGCCGAGGTGCCAGTCCGACCTGTCCGGCCGCACCG 758
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TCCAGTCGTGGATCACCGAGATGGCGGCGCACGTCAAGTCCATCGACCGCAACCACATGC 818
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TGGAGGTCGGCCTCGAGGGCTTCTACGGCGCCTCCTCGCCGTCCCGCATCGCCGCCGTCA 878
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 ACCCCTCCGGCTACCAGCTCGGCACCGACTTCATCGCCAACAACCAGGTCCCCGGCATCG 938
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 ACTTCGCCACCGTCCACTCCTACCCCGACCAATGGTTGTCGGGCAAGGACGACCAGGCGC 998
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 AGCTGGGGTTCATGGGGAGGTGGCTGGACGCGCACATCGCGGACGCGCTCTACGGCACGG 1058
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TGTACGCCAAGATCTACGAGTCGGCGCGGAGGGGCGGCGCCACGGTGGGGGGCCTCTTCT 1118
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 GGCAGCTCCTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACGAGGTCGTCTTCGGTG 1178
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 AGACGCCGTCCACCACGGGCGTCATCACCACGAACAGCCGGCGGCTGCGCTTCCTCAGCA 1238
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 AGGCGTTCGCGCGGGCCAGGCAGGCCCAGCCGGCGAGGGGGAAGGGCCGACACAACGGCG 1298
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 GGAAATAGAGATTGACCGCTGATTAGGCCCAGAAAGTGGTAGTAAAAGAAAGAAAGGCTT 1358
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 GGTTTGATTTGTGTGTTTTACTTCATGTGTGGGAGGTACGTGAGTGTGAGTTGATGGCTC 1418
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 CTCGAGATGATTTAAGATTCATCCGGGAGAGAAGGATTAGTATTTGTCATCCTTCTTGGT 1478
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 GCCTTGGGAGGACGTGTGTTTTTAGGTGTTCTTAATTATGTGGACCACGAAGTAGCCACT 1538
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 CTGTGGTGAAGTTTTATGGTACCTGGCTATGGAAGAAGCCAGCCAGTGATTACAAATTAC 1598
consensus_11516#1 ------------------------------------------------------------
consensus_11516#0 TTACGTAAAAAACACTAGTATAATACTCCTATATGAATGATG 1640
consensus_11516#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||