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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1167 fasta sequence
[TTGGTCGCTTTGTTGGCGAGGCCGGATCAGCTCCGGTCCTCCGGCGGCCGCAGGAAAAGGAATGGCCATGCTTGTCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAAATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGCGGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGTCCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCCGTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCGTCGGAGCCTCAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGTCACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAG-TTCGCCGACCCTGCAGGTTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCAC-AAACTTCGGTTCTCTC-TTGGAAAAAGCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACA-CTGGCGTTTCAGCTGC-GTCAT-GTCGTTCCCCTGGAGGCCTATTCTGTCCGCGAC-CGGGTACA-CTGAATATTACTTCGACGCTGGATCAGGAAAGGTGTG-AGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCA-CTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGAAGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCTTGTTGTAC-AGACTAC-AGACTACAAGC-AGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGTTCTAATCTAAACAACGCCAACAGAAGGATAATTAGCGATGGGATATCTGGAATCGTTTCTCGGATGAGAGTCTGAACTCTGAATAATCTCTGTAGTTTCTCTTGTGCAATGCAACTGCAGCATCCCCGCCAGGTTTCCCAAAAAAAA]
[+] EMBL AK073300 [TTGGTCGCTTTGTTGGCGAGGCCGGATCAGCTCCGGTCCTCCGGCGGCCGCAGGAAAAGGAATGGCCATGCTTGTCCGCTGTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAAATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGCGGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGTCCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCCGTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTTGAAGAAGCAGCGTCGGAGCCTCAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGTCACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAG TTCGCCGACCCTGCAGGTTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCAC AAACTTCGGTTCTCTC TTGGAAAAATCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACA CTGGCGTTTCAGCTGC GTCAT GTCGTTCCCCTGGAGGCCTATTCTGTCCGCGAC CGGGTACA CTGAATATTACTTCGACGCTGGATCAGGAA AGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCA CTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCCTGTTGTAC AGACTAC AGACTACAAGC AGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAG ]
[+] EMBL CF333741 [ AGGAATGGCCATGCTTGCCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAAATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGCGGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGTCCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCCGTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCGTCGGAGCCTCAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGTCACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAG TTCGCCGACCCTGCAGGTTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCAC AAACTTCGGTTCTCTC TTGGAAAAATCTAACATGAAGCTCACCAAATGGGAGGATCCGGAGGACAAATCAATTGGACA CTGGCGTTTCAGCTGC G ]
[+] EMBL AU069757 [ GAATGGCCATGCTTGTCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAAATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGCGGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGTCCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCCGTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCGTCGGANCCTCAGGGCCGCGCTCANGTCGCCGAGGCTGTCAAGGATGANTTCGCGCGGTCATATTTCGTCACAGGGAATCTCACGCTGAAAGGTTATNAAGATGACTGCGAGTTTCGCCGACCCTGCAG ]
[+] EMBL CA765185 [ aaggggGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGTCACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAG TTCGCCGACCCTGCAGGTTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCAC AAACTTCGGTTCTCTC TTGGAAAAAGCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACA CTGGCGTTTCAGCTGC GTCAT GTTGTTCCCCTGGAGGCCTATTCTGTCCGCGAC CGGGTACA CTGAATATTACTTCGACGCTGGATCAGGAAAGGTGTGCAGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCA CTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGAAGAATGAAGCATCGGTATTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCTTGTTGTAC AGACTAC AGACTACAAGC AGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGTTCTAATCTAAACAACGCCAACAGAAGGAT ]
[+] EMBL BM418869 [ accaGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAG TTCGCCGACCCTGCAGGTTCGTTCAAT GCCT CAGCGCTTCAAGAGAAACTGCACAAAACTTCGGTTCTCTC TTGGAAAAAGCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACACCTGGCGTTTCAGCTGC GTCAT GTCGTTCCCCTGGAGGCCTATTCTGTCCGCGAC CGGGTACACCTGAATATTACTTCGACGCTGGATCAGGAAAGGTGTGCAGGCATGTCGAGCACTGGAACGTCCCC AGATGGCACCTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGAAGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCTTGTTGTAC AGACTAC AGACTACAAGC AGTAATAGATCGAACCATAATCATTTTAaaaaaaa ]
[+] EMBL BI813800 [ GCAC AAACTTCGGTTCTCTCTTTGGAAAAAGCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACA CTGGCGTTTCAGCTGCAGTCATGGTCGTTCCCCTGGAGGCCTATTCTGTCCGCGACACGGGTACACCTGAATATTACTTCGACGCTGGATCAGGAAAGGTGTC AGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCA CTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGAAGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCTTGTTGTAC AGACTAC AGACTACAAGC AGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAGATTAAAaa ]
[+] EMBL AU174627 [ TGGAACGTCCCCAAGATGGCA CTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCCTGTTGTAC AGACTAC AGACTACAAGC AGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGTTCTAATCTAAACAACGCCAACAGAAGGATAATTAGCGATGGGATATCTGGAATCGTTTCTCGGATGAGAGTCTGAACTCTGAATAATCTCTGTAGTTTCTCTTGTGCAATGCAACTGCAGCATCCCCGCCAGGTTTCCCAAAAAAAA]
[+] EMBL BI813819 [ aGCTGCTCGCTCTTGTTGTACAAGACTACAAGACTACAAGCAAGTAATAGATCGAACCATAATCATTTTAGTTCTGGGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGTTCTAATCTAAACAACGCCAACAGAAGGATAATTAGCGATGGGATATCTGGAATCGTTTCTCGGATGAGAGTCTGAACTCaaaaaa ]
consensusID : consensus_11529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GAGAGAGAGAGAACACACAGATGTTGCGTCGTTGTGCCTGACGAACTGACGGATTTTACTGTCGTCCAGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCCTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCGAACCATAATCATTTTAAAAAAAA]
[-] EMBL CF333742 [GAGAGAGAGAGAACACACAGATGTTGCGTCGTTGTGCCTGACGAACTGACGGATTTTACTGTCGTCCAGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATCAGGTTAAGGCTGCTCGCTCCTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCGAACCATAATCATTTTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11529#0 TTGGTCGCTTTGTTGGCGAGGCCGGATCAGCTCCGGTCCTCCGGCGGCCGCAGGAAAAGG 60
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 AATGGCCATGCTTGTCCGCTCTCCAACTTCTACCCTCCCCGCAGCGAATCACCGGCAGAA 120
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 ATCCGGCGTGCTCCTCCGGCGTCCAACGCGCCGCTCCGCTCGCCGTTTCCAACTGCACGC 180
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 GGAGAAGCCCGCTTCCCCTGGCGCGGGCAACGAGACGTCCTCCAGCTCGGAGAACGCCGT 240
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 CCTCAGGGCCGCCTGGTACGGCTCCGAGCTCCTCGGCATCGCCGCCTCGTTCTTCCGGCC 300
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 GTCGCAGCCGCCTACGGAGGGGGACAGCGCCGGAGCCGTAGAAGAAGCAGCGTCGGAGCC 360
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 TCAGGGCCGCGCTCAGGTCGCCGAGGCTGTCAAGGATGACTTCGCGCGGTCATATTTCGT 420
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 CACAGGGAATCTCACGCTGAAGGCTTATGAAGAGGACTGCGAGTTCGCCGACCCTGCAGG 480
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 TTCGTTCAATGGCCTGCAGCGCTTCAAGAGAAACTGCACAAACTTCGGTTCTCTCTTGGA 540
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 AAAAGCTAACATGAAGCTCACCAAATGGGAGGATCTGGAGGACAAATCAATTGGACACTG 600
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 GCGTTTCAGCTGCGTCATGTCGTTCCCCTGGAGGCCTATTCTGTCCGCGACCGGGTACAC 660
consensus_11529#1 ----------------------------GAGAGAGAGAGAACACACAGATGTTGCGTCGT 32
*** * * * *
consensus_11529#0 TGAATATTACTTCGACGCTGGATCAGGAAAGGTGTGAGGCATGTCGAGCACTGGAACGTC 720
consensus_11529#1 TGTGCCTGACGA-ACTGACGGATTTTACTGTCGTCCAGGCATGTCGAGCACTGGAACGTC 91
** * ** * **** ************************
consensus_11529#0 CCCAAGATGGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGC 780
consensus_11529#1 CCCAAGATGGCACTCCTGCGGCAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGC 151
************************************************************
consensus_11529#0 ACCGAAGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAAT 840
consensus_11529#1 ACCGACGAATGAAGCATCGGTGTTCATCGTGAACTAGGATTATGCATGATTATACTCAAT 211
***** ******************************************************
consensus_11529#0 GGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTAT 900
consensus_11529#1 GGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTAT 271
************************************************************
consensus_11529#0 CAGGTTAAGGCTGCTCGCTCTTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCGA 960
consensus_11529#1 CAGGTTAAGGCTGCTCGCTCCTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCGA 331
******************** ***************************************
consensus_11529#0 ACCATAATCATTTTAGTTCTGGGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGT 1020
consensus_11529#1 ACCATAATCATTTTAA----AAAAAA---------------------------------- 353
*************** * *
consensus_11529#0 TCTAATCTAAACAACGCCAACAGAAGGATAATTAGCGATGGGATATCTGGAATCGTTTCT 1080
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 CGGATGAGAGTCTGAACTCTGAATAATCTCTGTAGTTTCTCTTGTGCAATGCAACTGCAG 1140
consensus_11529#1 ------------------------------------------------------------
consensus_11529#0 CATCCCCGCCAGGTTTCCCAAAAAAAA 1167
consensus_11529#1 ---------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||