These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11531#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2541 fasta sequence [CCGCGCTTAAGTTTCTTCCTCTCTTCCCCTCCCCTCCTGCCTAGCATCAGATTCTTCTCATGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCCGGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTTGCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTCCAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCACTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCTTGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCTTTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGAGAAGATGTGGTAACATTTCTTGGCTTCTTGCGTTTTGGATTGGAGGCAAGATTGCTTGTGAGGATCTTGGTTAGCCTGAAACTTCGTTTGCTGTTCAGAATTCGGGGGGCTTTGTTGGTTCTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTC-TTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAGCTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGGAAAAGAAAAGCCGTTTGTTCATTGTTTTGTGGATGGAACGTGGAGTACTATCACTGGGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCACGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTCAGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGGGCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCACATGGAGGTAGCTTATCCAGGCCAACCTCATTCAACAAAGAAAAGCAAGAGGGAAAGAAACCTCCAGCACGTGTTACATCTTTTAAGAACAGTATTGAAGACTTCAATCCATTCAAGTTGCTAGAACACCTATTTGTCGAATGCAAGCACCAAGGGGAGACTTTGGTTAATGAAGGAGTCATAACAATGAAAGATATCGAAGAGACAAAGTCGGGAAAAGTTGGCACTGGAGTTCTTAATGTTGGTTTACCAGCATATGTAATCCTTAATGCACTCCTTCGGTCCGCAAAAGCTAATTCTGTTGGCCTACTCTTAAGTGATGGCTCTGAGATTACATCTGACAATAGGCCTAAACATACACTCTATGAATGGTTCTTTGACCCTCTTTTGGTCATCAAAGAACAAATTAAAGCCGAGAATTTTACAGAAGAGGAGGAAAAATATCTCAAAATGCGAGTTTTGTTGATTGGTGGCCCTGATCGCGTCAAGGGCAGTCTTCCCGATGTGCCATCACTGGATGAGCGAAAAAAGGCCGAAATAGACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGAAGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGGTGGCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGCTCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAATTAGTAGATTCTGCAGCTATATGAGCTAA] [+] EMBL AK069389 [CCGCGCTTAAGTTTCTTCCTCTCTTCCCCTCCCCTCCTGCCTAGCATCAGATTCTTCTCATGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCCGGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTTGCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTCCAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCACTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCTTGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCTTTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGAGAAGATGTGGTAACATTTCTTGGCTTCTTGCGTTTTGGATTGGAGGCAAGATTGCTTGTGAGGATCTTGGTTAGCCTGAAACTTCGTTTGCTGTTCAGAATTCGGGGGGCTTTGTTGGTTCTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTC TTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAGCTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGGAAAAGAAAAGCCGTTTGTTCATTGTTTTGTGGATGGAACGTGGAGTACTATCACTGGGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCACGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTCAGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGGGCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCACATGGAGGTAGCTTATCCAGGCCAACCTCATTCAACAAAGAAAAGCAAGAGGGAAAGAAACCTCCAGCACGTGTTACATCTTTTAAGAACAGTATTGAAGACTTCAATCCATTCAAGTTGCTAGAACACCTATTTGTCGAATGCAAGCACCAAGGGGAGACTTTGGTTAATGAAGGAGTCATAACAATGAAAGATATCGAAGAGACAAAGTCGGGAAAAGTTGGCACTGGAGTTCTTAATGTTGGTTTACCAGCATATGTAATCCTTAATGCACTCCTTCGGTCCGCAAAAGCTAATTCTGTTGGCCTACTCTTAAGTGATGGCTCTGAGATTACATCTGACAATAGGCCTAAACATACACTCTATGAATGGTTCTTTGACCCTCTTTTGGTCATCAAAGAACAAATTAAAGCCGAGAATTTTACAGAAGAGGAGGAAAAATATCTCAAAATGCGAGTTTTGTTGATTGGTGGCCCTGATCGCGTCAAGGGCAGTCTTCCCGATGTGCCATCACTGGATGAGCGAAAAAAGGCCGAAATAGACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGAAGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGGTGGCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGCTCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAATTAGTAGATTCTGCAGCTATATGA ] [+] EMBL CB646261 [ CTTCCTCTCTTCCCCTCCCCTCCTGCCTAGCATCAGATTCTTCTCATGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCCGGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTTGCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTCCAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCACTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCTTGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCTTTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGAGAAGATGTGGTAACATTTCTTGGCTTCTTGCGTTTTGGATTGGAGGCAAGATTGCTTGTGAGGATCTTGGTTAGCCTGAAACTTCGTTTGCTGTTCAGAATTCGGGGGGCTTTGTTGGTTCTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCAT ] [+] EMBL CF303642 [ TTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGGGCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCACATGGAGGTAGCTTATCCAGGCCAACCTCATTCAACAAAGAAAAGCAAGAGGGAAAGAAACCTCCAGCACGTGTTACATCTTTTAAGAACAGTATTGAAGACTTCAATCCATTCAAGTTGCTAGAACACCTATTTGTCGAATGCAAGCACCAAGGGGAGACTTTGGTTAATGAAGGAGTCATAACAATGAAAGATATCGAAGAGACAAAGTCGGGAAAAGTTGGCACTGGAGTTCTTAATGTTGGTTTACCAGCATATGTAATCCTTAA ] [-] EMBL CB646262 [ ATGAAGGAGTCATAACAATGAAAGATATCGAAGAGACAAAGTCGGGAAAAGTTGGCACTGGAGTTCTTAATGTTGGTTTACCAGCATATGTAATCCTTAATGCACTCCTTCGGTCCGCAAAAGCTAATTCTGTTGGCCTACTCTTAAGTGATGGCTCTGAGATTACATCTGACAATAGGCCTAAACATACACTCTATGAATGGTTCTTTGACCCTCTTTTGGTCATCAAAGAACAAATTAAAGCCGAGAATTTTACAGAAGAGGAGGAAAAATATCTCAAAATGCGAGTTTTGTTGATTGGTGGCCCTGATCGCGTCAAGGGCAGTCTTCCCGATGTGCCATCACTGGATGAGCGAAAAAAGGCCGAAATAGACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGAAGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGGTGGCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGCTCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAATTAGTAGATTCTGCAGCTATATGAGCTAA] consensusID : consensus_11531#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1501 fasta sequence [TCAGATTCTTCTCATGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCCGGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTTGCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTCCAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCACTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCTTGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCTTTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGAGAAGATGTGAATTCGGGGGGCTTTGTTGGTTCTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAGCTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGGAAAAGAAAAGCCGTTTGTTCATTGTTTTGTGGATGGAACGTGGAGTACTATCACTGGGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCACGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTCAGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGGGCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCACATGGAGGTAGCTTATCCAGGCC] [+] EMBL AK121909 [TCAGATTCTTCTCATGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCCGGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTTGCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTCCAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCACTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCTTGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCTTTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGAGAAGATGTGAATTCGGGGGGCTTTGTTGGTTCTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAGCTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGGAAAAGAAAAGCCGTTTGTTCATTGTTTTGTGGATGGAACGTGGAGTACTATCACTGGGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCACGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTCAGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTCTTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCAGTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGGGCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTGACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCACATGGAGGTAGCTTATCCAGGCC] [+] EMBL CF303402 [ TTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAGCTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGGAAAAGAAAAGCCGTTTGTTCATTGTTTTGTGGATGGAACGTGGAGTACTATCACTGGGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTATGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCGATATTCCTGGTGCTTTATTA ] [+] EMBL CF304597 [ TTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGCCACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCGGCCTCCTCATCCTGGGGGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGAAAACATC ] [+] EMBL CF307449 [ GGTCATCAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATTATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACTTACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATTGCTGCCACTGCAACCTTAATCTTATGGTTGATAGTTGGCATCCCTGGAAGCATCTTAACTGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAA ] consensusID : consensus_11531#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [GCGGTAGGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAACTAGTAGATTCTGCAGCTATATGAGCTAACCCTAACCATTCTTCTTTAAAAAAAAAAAGCGAAAAAAGGCCGAAATAGACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGAAGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGTGGCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGCTCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAACTAC] [+] EMBL CF329871 [GCGGTAGGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAACTAGTAGATTCTGCAGCTATATGAGCTAACCCTAACCATTCTTCTTTAAAAAAAAAAAGCGAAAAAAGGCCGAAATAGACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGAAGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGTGGCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGCTCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGTACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAACTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11531#0 CCGCGCTTAAGTTTCTTCCTCTCTTCCCCTCCCCTCCTGCCTAGCATCAGATTCTTCTCA 60 consensus_11531#1 ----------------------------------------------TCAGATTCTTCTCA 14 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCC 120 consensus_11531#1 TGTCGGTTTTTTCTCCGCCCGGTTAATCATTTCCCACCATTTCCTTTCTCTCCCGGCGCC 74 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTT 180 consensus_11531#1 GGTGGATCGAGCTGCAGTTTCTTTTTGGTTCTTGGCACCTACTAGGCTACTACCATTGTT 134 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTC 240 consensus_11531#1 GCTGTTGTCCGGTGTACATCCACAACTTCTTTGCCTGCCTGCTGTTCCTTTTAGTTTCTC 194 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 CAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCA 300 consensus_11531#1 CAAGCTCCTGCCAACAGCAGCACAGCCTGTGTGTCACCACTCACCAGGGAGGAGGCCCCA 254 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 CTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCT 360 consensus_11531#1 CTCCTCCTGTCTTGTTGCTCACTCACTCTGCTGGCAGCTTCCCCTAGGTTGTCCTTTGCT 314 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCT 420 consensus_11531#1 TGCCCTGGGTTTGGTTCTTGGGTCCATCCATCTTCAGAGTTTTCCTTTTTGCTGAATCCT 374 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGA 480 consensus_11531#1 TTGATCTCGGATGGATGATGGCCGGTTCTTGATAAGCCTTGCTGCAGGTTCTCCTCCCGA 434 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GAAGATGTGGTAACATTTCTTGGCTTCTTGCGTTTTGGATTGGAGGCAAGATTGCTTGTG 540 consensus_11531#1 GAAGATGTG--------------------------------------------------- 443 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 AGGATCTTGGTTAGCCTGAAACTTCGTTTGCTGTTCAGAATTCGGGGGGCTTTGTTGGTT 600 consensus_11531#1 --------------------------------------AATTCGGGGGGCTTTGTTGGTT 465 consensus_11531#2 ----------------------------------------GCGGTAGGACAGTGCTGTTT 20 * ** * ** ** ** consensus_11531#0 CTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGC 660 consensus_11531#1 CTTGGCCTCTTGCCTGTTGGTTGGGTTTGAAGGAGGCTGAAGAGAGTTTGCCAATGGAGC 525 consensus_11531#2 TTTCACTTTGTACC--------GGACATGCTAGTGA---AGAGGAACCTTTCCCTGTAAT 69 ** * * * ** ** ** * * * ** * * ** * consensus_11531#0 CACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCG 720 consensus_11531#1 CACCAAGTGGGTTCTGGGCCTCCCTGGGGAGCTTCCTCAAGTTCTTGCCCTACTTCTGCG 585 consensus_11531#2 TACCAGCTACATTGTACAAACT----AGTAGATTCTGCAGCTATATGAGCTAACCCTAAC 125 **** * ** * * ** *** ** * ** *** ** consensus_11531#0 GCCTCCTCATCCTGGGGGTCAT-CAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATT 779 consensus_11531#1 GCCTCCTCATCCTGGGGGTCAT-CAAAGGTATTTTGATATGCCCTTGGGCATGCCTTATT 644 consensus_11531#2 CATTCTTCTTTAAAAAAAAAAAGCGAAAAAAGGCCGAAATAGAC--GCATTTGCTCGCAG 183 ** ** * * * ** * ** ** * * *** consensus_11531#0 ATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACT 839 consensus_11531#1 ATGGCAATTGGATTATCTGCGCTAATCCTGGGCTTATGGCCCATGCATGTGATTTGGACT 704 consensus_11531#2 ACTGCAAG-GGATCA-CAAAGTCGATATCAAG---ATACCCTAC---CGCGAAGCGACGC 235 * **** **** * * * ** * ** ** * * ** * consensus_11531#0 TACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATT 899 consensus_11531#1 TACTACTGCATTATCAGAACTAAGCTGGTAGGACCTGTAGTAAAGCTTCTGCTCCTTATT 764 consensus_11531#2 TTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGTGGCGGTCAAT 295 * * * ** *** ** * * ** * * * ** * * * consensus_11531#0 GCTGCCACTGCAACCTTAATCTTATGG-TTGATAGTTGGCATCCCTGGAAGCATCTTAGC 958 consensus_11531#1 GCTGCCACTGCAACCTTAATCTTATGG-TTGATAGTTGGCATCCCTGGAAGCATCTTAGC 823 consensus_11531#2 -CGACCAATG-GGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATG--CTCAGC 351 * *** ** * ***** * * **** ** ***** * *** ** *** consensus_11531#0 TGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGG 1018 consensus_11531#1 TGGATTGGTGTATGGCTTTCTAGCACCGATAATGGCAACATTTGGTGCGGTTGGAAAAGG 883 consensus_11531#2 CAGA--AGTCCATGGG-----GAAGGCGGCAAACGTCAGAGATGAAG-ATCCAGAAGCGC 403 ** ** **** ** ** * * * ** * *** * consensus_11531#0 AAAAGAAAAGCCGT--TTGTTCATTGTTTTGTG--GATGGAACGTGGAGTACTATCACTG 1074 consensus_11531#1 AAAAGAAAAGCCGT--TTGTTCATTGTTTTGTG--GATGGAACGTGGAGTACTATCACTG 939 consensus_11531#2 AAATGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTT 463 *** ** ***** * * * * ** * * * * ** *** ** * ***** consensus_11531#0 GGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTA 1134 consensus_11531#1 GGAGCTGTACGATAGTCAGGGACGTGAAAGACCTGCTTTTCCACTCCTATTTTTCTATTA 999 consensus_11531#2 TGTACCGGACAT--GCTAGTGAAGAGGAAC-CTTTCCCTGTAACTAC------------- 507 * * * ** * ** ** * * ** * * * * *** * consensus_11531#0 TGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCG 1194 consensus_11531#1 TGGACGATCTTCGTCTTCAGGCACCTCCTGATAACAAGCCATATGAGATAAGATTGCTCG 1059 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 ATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCA 1254 consensus_11531#1 ATATTCCTGGTGCTTTATTATCTGCTGCATGTGGACTCATACTGGATGGTATAATGTTCA 1119 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 CGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTC 1314 consensus_11531#1 CGCTGATTGCCATCTACAAATGCCCTGTGATGCTTTTCAAAGGATGGAAACGACTGATTC 1179 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 AGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTC 1374 consensus_11531#1 AGGATATGATTGGGAGAGAGGGACCTTTTCTGGAGACAGCTTGTGTGCCGTTCGCAGGTC 1239 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCA 1434 consensus_11531#1 TTGCTATTCTTCTCTGGCCATTTGCCGTAGTGGGAGCTGTTCTCGCCTCCATCCTATCCA 1299 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGG 1494 consensus_11531#1 GTATTCCTTTAGGCGCATTTGGTGCAGTCGTGGCTTATCAGGAATCCTCCCTAAAGATGG 1359 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTG 1554 consensus_11531#1 GCTTATCTTATGTTGTCTCATCTGTGTCCATCTTTGATGAATACACAAATGATGTGCTTG 1419 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 ACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCAC 1614 consensus_11531#1 ACATGGCACCGGGATCTTGTTTTCCGAGGTTGAAATATAGGAAGAGAGAAGATTCTTCAC 1479 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 ATGGAGGTAGCTTATCCAGGCCAACCTCATTCAACAAAGAAAAGCAAGAGGGAAAGAAAC 1674 consensus_11531#1 ATGGAGGTAGCTTATCCAGGCC-------------------------------------- 1501 consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 CTCCAGCACGTGTTACATCTTTTAAGAACAGTATTGAAGACTTCAATCCATTCAAGTTGC 1734 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TAGAACACCTATTTGTCGAATGCAAGCACCAAGGGGAGACTTTGGTTAATGAAGGAGTCA 1794 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TAACAATGAAAGATATCGAAGAGACAAAGTCGGGAAAAGTTGGCACTGGAGTTCTTAATG 1854 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TTGGTTTACCAGCATATGTAATCCTTAATGCACTCCTTCGGTCCGCAAAAGCTAATTCTG 1914 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TTGGCCTACTCTTAAGTGATGGCTCTGAGATTACATCTGACAATAGGCCTAAACATACAC 1974 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TCTATGAATGGTTCTTTGACCCTCTTTTGGTCATCAAAGAACAAATTAAAGCCGAGAATT 2034 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TTACAGAAGAGGAGGAAAAATATCTCAAAATGCGAGTTTTGTTGATTGGTGGCCCTGATC 2094 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GCGTCAAGGGCAGTCTTCCCGATGTGCCATCACTGGATGAGCGAAAAAAGGCCGAAATAG 2154 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 ACGCATTTGCTCGCAGACTGCAAGGGATCACAAAGTCGATATCAAGATACCCTACCGCGA 2214 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 AGCGACGCTTCGATATTCTTGTCAAGCAGCTCTTGTCTGAGCTTGAGAGGACGGTGGGTG 2274 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 GCGGTCAATCGACCAATGGGTCCCAATCTCAAAGCTTGAGAGGCGGCATTGCCAGAATGC 2334 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TCAGCCAGAAGTCCATGGGGAAGGCGGCAAACGTCAGAGATGAAGATCCAGAAGCGCAAA 2394 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 TGACAAGCCATGATCGCACTCCGTGATATAATGTTTGACAGTGCTGTTTTTTCACTTTGT 2454 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 ACCGGACATGCTAGTGAAGAGGAACCTTTCCCTGTAATTACCAGCTACATTGTACAAATT 2514 consensus_11531#1 ------------------------------------------------------------ consensus_11531#2 ------------------------------------------------------------ consensus_11531#0 AGTAGATTCTGCAGCTATATGAGCTAA 2541 consensus_11531#1 --------------------------- consensus_11531#2 --------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||