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Oryza sativa
cluster # 11533 cluster # 11533       Sequences # 9       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_11533#0 length = 1174 sequences # 2  
consensus_11533#1 length = 966 sequences # 4  
consensus_11533#2 length = 685 sequences # 3  

consensusID : consensus_11533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1174
fasta sequence
                              [GGCCAACCCACATGCACGTGTACCGATGTACATGGCGGCGGCGGCTGCGGGAGCAAGCACACCCTTCAATTTTTGCCGCCACGGCTCGCACGCCGAGTACGACGCCGTCTTCAGCGGCAGCTGGATGGCGCGCCGCCCCTCCGCGGCGCCGCACGGTGGCGGCGCCTCCGGCTCCGGCTCCGGCAGCGGCTACGGCGCCGCCTCGTACGTTGCTCCCACCTTCGGCGCGGCGTTTAGGCAGCAGCATCTCGACCTCCTCGACTACCTGTCCGACGATCAGGGCGTTCCGGCGCCACCACCAGCGGCTGTGCCCAGCGCGTCGTACGTGACGCCGGCGCCGGCGATGGCCCCCGCTGAACCGGTCGTGCCGGATGCTGTTGCCGCCGCCGGCGGCTATCCGAGGAGCGTGGCTGCGGCGGCGGCGGCCGTGGCCGGCGAGGGAAGAGATCGGACGACGACGGACAAGATCGCATTCCGGACGAGGTCGGACGATGAGATACTCGACGACGGGTATAAGTGGAGGAAGTACGGGAAAAAGTCCGTTAAGAACAGCCCTAATCCGAGGAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGAGGGTGGAGAGAGACAAGAACGACCCGCGGTACGTGGTGACGATGTACGAGGGGATCCACAACCACGTGTGCCCCGGCACTGTCTACTACGCCGCGCAGGACGCCGCCTCCGGCCGCTTTTTCGTCGCCGGGATCAGTCACCCAGACCTTAATTAAGCTAGGATATGCTTTGCCGGCCCAGCTGTGGCTTAGCTTGATGTGCAGCTCTAGTTATTGTATGGGCTGTACGGTTCAGTTATTTGAAGCGGGTTATACTTATATGTTGTTAATGTTTGCCTACTGATTTTAATTAATTTCTTAGAGTTAGACTCAATTTGGCGGAGGGATTCCCTTCAAAAAAAGAAATCCCTTCAAAAAATTTGGCGGAGGGACGACTGATATATATGGTGACATTAGCTAGGTTTGCTCACTTTTGGCAAAAATAACAAGTTTCCTTTCGTGCCACTCTCCGTCCCTAGGTCAGTGTTTGGCAAAACGCCCAAAAAAATGTCCGTGTTGCCAATTAATTTGTCGATTGTGTACTTCAATTTCAAGCCAAATTTCGGCAAAGCTAGTACTTTGTGTGTT]

[+] EMBL AK108555             [GGCCAACCCACATGCACGTGTACCGATGTACATGGCGGCGGCGGCTGCGGGAGCAAGCACACCCTTCAATTTTTGCCGCCACGGCTCGCACGCCGAGTACGACGCCGTCTTCAGCGGCAGCTGGATGGCGCGCCGCCCCTCCGCGGCGCCGCACGGTGGCGGCGCCTCCGGCTCCGGCTCCGGCAGCGGCTACGGCGCCGCCTCGTACGTTGCTCCCACCTTCGGCGCGGCGTTTAGGCAGCAGCATCTCGACCTCCTCGACTACCTGTCCGACGATCAGGGCGTTCCGGCGCCACCACCAGCGGCTGTGCCCAGCGCGTCGTACGTGACGCCGGCGCCGGCGATGGCCCCCGCTGAACCGGTCGTGCCGGATGCTGTTGCCGCCGCCGGCGGCTATCCGAGGAGCGTGGCTGCGGCGGCGGCGGCCGTGGCCGGCGAGGGAAGAGATCGGACGACGACGGACAAGATCGCATTCCGGACGAGGTCGGACGATGAGATACTCGACGACGGGTATAAGTGGAGGAAGTACGGGAAAAAGTCCGTTAAGAACAGCCCTAATCCGAGGAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGAGGGTGGAGAGAGACAAGAACGACCCGCGGTACGTGGTGACGATGTACGAGGGGATCCACAACCACGTGTGCCCCGGCACTGTCTACTACGCCGCGCAGGACGCCGCCTCCGGCCGCTTTTTCGTCGCCGGGATCAGTCACCCAGACCTTAATTAAGCTAGGATATGCTTTGCCGGCCCAGCTGTGGCTTAGCTTGATGTGCAGCTCTAGTTATTGTATGGGCTGTACGGTTCAGTTATTTGAAGCGGGTTATACTTATATGTTGTTAATGTTTGCCTACTGATTTTAATTAATTTCTTAGAGTTAGACTCAATTTGGCGGAGGGATTCCCTTCAAAAAAAGAAATCCCTTCAAAAAATTTGGCGGAGGGACGACTGATATATATGGTGACATTAGCTAGGTTTGCTCACTTTTGGCAAAAATAACAAGTTTCCTTTCGTGCCACTCTCCGTCCCTAGGTCAGTGTTTGGCAAAACGCCCAAAAAAATGTCCGTGTTGCCAATTAATTTGTCGATTGTGTACTTCAATTTCAAGCCAAATTTCGGCAAAGCTAGTACTTTGTGTGTT]
[+] EMBL D43156               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGACGATGTACGAGGGGATCCACAACCACGTGTGCCCCGGCACTGTCTACTACGCCGCGCAGGACGCCGCCTCCGGCCGCTTTTTCGTCGCCGGGATCAGTCACCCAGACCTTAATTAAGCTAGGATATGCTTTGCCGGCCCAGCTGTGGCTTAGCTTGATGTGCAGCTCTAGTTATTGTATGGGCTGTACGGTTCAGTTATTTGAAGCGGGTTATACTTATATGTTGTTAATGTTTGCCTACTGATTTTAATTAATTTCTTAGAGTTAGACTCAATTTGG                                                                                                                                                                                                                                                         ]


>consensus_11533#0 GGCCAACCCACATGCACGTGTACCGATGTACATGGCGGCGGCGGCTGCGGGAGCAAGCAC ACCCTTCAATTTTTGCCGCCACGGCTCGCACGCCGAGTACGACGCCGTCTTCAGCGGCAG CTGGATGGCGCGCCGCCCCTCCGCGGCGCCGCACGGTGGCGGCGCCTCCGGCTCCGGCTC CGGCAGCGGCTACGGCGCCGCCTCGTACGTTGCTCCCACCTTCGGCGCGGCGTTTAGGCA GCAGCATCTCGACCTCCTCGACTACCTGTCCGACGATCAGGGCGTTCCGGCGCCACCACC AGCGGCTGTGCCCAGCGCGTCGTACGTGACGCCGGCGCCGGCGATGGCCCCCGCTGAACC GGTCGTGCCGGATGCTGTTGCCGCCGCCGGCGGCTATCCGAGGAGCGTGGCTGCGGCGGC GGCGGCCGTGGCCGGCGAGGGAAGAGATCGGACGACGACGGACAAGATCGCATTCCGGAC GAGGTCGGACGATGAGATACTCGACGACGGGTATAAGTGGAGGAAGTACGGGAAAAAGTC CGTTAAGAACAGCCCTAATCCGAGGAACTACTACCGGTGCTCGACGGAGGGGTGCAACGT GAAGAAGAGGGTGGAGAGAGACAAGAACGACCCGCGGTACGTGGTGACGATGTACGAGGG GATCCACAACCACGTGTGCCCCGGCACTGTCTACTACGCCGCGCAGGACGCCGCCTCCGG CCGCTTTTTCGTCGCCGGGATCAGTCACCCAGACCTTAATTAAGCTAGGATATGCTTTGC CGGCCCAGCTGTGGCTTAGCTTGATGTGCAGCTCTAGTTATTGTATGGGCTGTACGGTTC AGTTATTTGAAGCGGGTTATACTTATATGTTGTTAATGTTTGCCTACTGATTTTAATTAA TTTCTTAGAGTTAGACTCAATTTGGCGGAGGGATTCCCTTCAAAAAAAGAAATCCCTTCA AAAAATTTGGCGGAGGGACGACTGATATATATGGTGACATTAGCTAGGTTTGCTCACTTT TGGCAAAAATAACAAGTTTCCTTTCGTGCCACTCTCCGTCCCTAGGTCAGTGTTTGGCAA AACGCCCAAAAAAATGTCCGTGTTGCCAATTAATTTGTCGATTGTGTACTTCAATTTCAA GCCAAATTTCGGCAAAGCTAGTACTTTGTGTGTT



consensusID : consensus_11533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 966
fasta sequence
                              [CCATCACAGAAGAAAATTCACCGGTGAAAAGGTTCAGCACTGTGCAATGGCGGCTTCCGTAGGACTGAACCCTGAAGCTTTCTTCTTCAGCAACTCCTACTCCTACTCCTCATCCCCTTTCATGGCCAGCTACACGCCGGAGTTCTCGGCCGCCGCTATCGACGCCAACTTATTCTCCGGCGAGCTCGATTTCGACTGCTCTCTCCCAGCTCCGGCCCAGGAGTACCCGGAAAATGAAAACACTATGATGA-GGTACGAGAGCGA-GGAGAAGATGAGGGCGAGGG-TGAACGGG-AGGATCGGG-TTCAGGACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGGCAAGAAAGCTGTCAAGAACAGCCC-AAATCCAAGAAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGCGAGTGGAGAGAGACCGGGAGGACCACCGCTACGTCATCACCACCTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGGCGCTGCAGTACG-CCGCCGCCGCCGGCGACTACTACAGCCCGCCGCTCAGCAGCGCCGGCTCGCCGCCGGCCGCCTATTCGGCAGGCGGCTCGCTGCTCTTCTGAGGCTGATGAGTTTGTCTAGTACTAGACACGCCCGGGAGCTCTAGCTAGGATAGAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAATTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGATAGTGACTGCTTGTTAATTTAAAAAAGCCGATCGATGTGATCTTCGGTTCGTGTGTTCATGACTTAACGTCTTCATGTATGTTTTTAGCAGAAAGATCAACTGCTGGTTTTAATATACAATTTTTAGGAATTTTACCCCGTAAGGTCGAGTACCATTACTTCTTTTNNNANNNNNNNNNNNNNANAAAANCTTNNCCCTTTGC]

[+] EMBL AK066252             [CCATCACAGAAGAAAATTCACCGGTGAAAAGGTTCAGCACTGTGCAATGGCGGCTTCCGTAGGACTGAACCCTGAAGCTTTCTTCTTCAGCAACTCCTACTCCTACTCCTCATCCCCTTTCATGGCCAGCTACACGCCGGAGTTCTCGGCCGCCGCTATCGACGCCAACTTATTCTCCGGCGAGCTCGATTTCGACTGCTCTCTCCCAGCTCCGGCCCAGGAGTACCCGGAAAATGAAAACACTATGATGA GGTACGAGAGCGA GGAGAAGATGAGGGCGAGGG TGAACGGG AGGATCGGG TTCAGGACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGGCAAGAAAGCTGTCAAGAACAGCCC AAATCCAAGAAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGCGAGTGGAGAGAGACCGGGAGGACCACCGCTACGTCATCACCACCTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGGCGCTGCAGTACG CCGCCGCCGCCGGCGACTACTACAGCCCGCCGCTCAGCAGCGCCGTCTCGCCGCCGGCCGCCTATTCGGCAGGCGGCTCGCTGCTCTTCTGAGGCTGATGAGTTTGTCTAGTACTAGACACGCCCGGGAGCTCTAGCTAGGATAGAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAATTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGATAGTGACTGC                                                                                                                                                                                                 ]
[+] EMBL BE230596             [             AAATTCACCGGTGAAAAGGTTCAGCACTGTGCAATGGCGGCTTCCGTAGGACTGAACCCTGAAGCTTTCTTCTTCAGCAACTCCTACTCCTACTCCTCATCCCCTTTCATGGCCAGCTACACGCCGGAGTTCTCGGCCGCCGCTATCGACGCCAACTTATTCTCCGGCGAGCTCGATTTCGACTGCTCTCTCCCAGCTCCGGCCCAGGAGTACCCGGAAAATGAAAACACTATGATGA GGTACGAGAGCGA GGAGAAGATGAGGGCGAGGG TGAACGGG AGGATCGGG TTCAGGACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGGCAAGAAAGCTGTCAAGAACAGCCC AAATCCAAGAAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGCGAGTGGAGAGAGACCGGGAGGACCACCGCTACGTCATCACCACCTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGG GCTGCAGTACGCCCGCCGCCG CGGCGACTACTACAGCCCGCCG TTAACAACGCCGGCTCGCCGCCcgg                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM419201             [                                                                                                                                                                                                                                                acCTATGATGAGGGTACGAGAGCGAGGGAGAAGATGA GGCGAGGGTTGAACGGGAAGGATCGGGTTTCAGGACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGGCAAGAAAGCTGTCAAGAACAGCCCAAAATCCAAGAAACTACTACCGGTGCTCGACGGAGGGGTGCAACGTGAAGAAGCGAGTGGAGAGAGACCGGGAGGACCACCGCTACGTCATCACCACCTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGGCGCTGCAGTACG CCGCCGCCGCCGGCGACTACTACAGCCCGCCGCTCAGCAGCGCCGGCTCGCCGCCGGCCGCCTATTCGGCAGGCGGCTCGCTGCTCTTCTGAGGCTGATGAGTTTGTCTAGTACTAGACACGCCCGGGAGCTCTAGCTAGGATAGAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAATTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGATAGTGACTGCTTGTTAATTTAAAAAA                                                                                                                                                                                 ]
[+] EMBL AW069964             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGCCCGGGAGCTCTAGCTAGGATAGAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAATTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGATAGTGGCTGCTTGTTAATTTAATTTTGCCGATCGATGTGATCTTCGGTTCGTGTGTTCATGACTTAACGTCTTCATGTATGTTTTTAGCAGAAAGATCAACTGCTGGTTTTAATATACAATTTTTAGGAATTTTACCCCGTAAGGTCGAGTACCATTACTTCTTTTNNNANNNNNNNNNNNNNANAAAANCTTNNCCCTTTGC]


>consensus_11533#1 CCATCACAGAAGAAAATTCACCGGTGAAAAGGTTCAGCACTGTGCAATGGCGGCTTCCGT AGGACTGAACCCTGAAGCTTTCTTCTTCAGCAACTCCTACTCCTACTCCTCATCCCCTTT CATGGCCAGCTACACGCCGGAGTTCTCGGCCGCCGCTATCGACGCCAACTTATTCTCCGG CGAGCTCGATTTCGACTGCTCTCTCCCAGCTCCGGCCCAGGAGTACCCGGAAAATGAAAA CACTATGATGAGGTACGAGAGCGAGGAGAAGATGAGGGCGAGGGTGAACGGGAGGATCGG GTTCAGGACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGG CAAGAAAGCTGTCAAGAACAGCCCAAATCCAAGAAACTACTACCGGTGCTCGACGGAGGG GTGCAACGTGAAGAAGCGAGTGGAGAGAGACCGGGAGGACCACCGCTACGTCATCACCAC CTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGGCGCTGCAGTACGC CGCCGCCGCCGGCGACTACTACAGCCCGCCGCTCAGCAGCGCCGGCTCGCCGCCGGCCGC CTATTCGGCAGGCGGCTCGCTGCTCTTCTGAGGCTGATGAGTTTGTCTAGTACTAGACAC GCCCGGGAGCTCTAGCTAGGATAGAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAA TTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGATAGTGACTGCTTGTTAA TTTAAAAAAGCCGATCGATGTGATCTTCGGTTCGTGTGTTCATGACTTAACGTCTTCATG TATGTTTTTAGCAGAAAGATCAACTGCTGGTTTTAATATACAATTTTTAGGAATTTTACC CCGTAAGGTCGAGTACCATTACTTCTTTTNNNANNNNNNNNNNNNNANAAAANCTTNNCC CTTTGC



consensusID : consensus_11533#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 685
fasta sequence
                              [AAGTACGGCAAGAAAGTCCGGTCCAAGAAACAGCCCCAACCCAAGGAACTACTACCGGTGCTNGACGGAAGGGGTGCAACGTGAAGAAGAGGGTGGAACGGGGACAAGGACGACCCGAGCNACGTGGTGACGACGTACGAGGGGACGCACAACCACGTGAGCCCCAGCACGGTGTACTACGCCAGCCAGGACACCGCCTCCGGCCGCTTCTTCGTCGCCGGCACGCAGCCGCCAGGTTCTCTCAATTAACCGCGCGCGTACGGTTAATTTGATCGATCGGGTCANCCATGGGACTTTTCCAATGCTAGCTAGCTAATAGTGTAGGTGTTCTGGGCCGGATTNTTGATCGAGATAGCAGCCTCTTGATTGAGATGCCCAGATGGGTCATTTTGGATGT-AGCTGGATCTTT-TTTTCCCCTTTTCTTCTCTCGATCTCTGTCCCGTCCTT-TTTGCCTGTTTCGATCATTGGAAGGCCGGGCC-GGCCTGGCTGGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAGGATCCTCCCAACTATCCCCCTTGAGCCTAGGTAATATAGCCATGGGAAATGTAACATATATATACTGTTTAACCGTGC-AATAAAAATGTACAGAGCTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCTCGGC]

[+] EMBL AU093050             [AAGTACGGCAAGAAAGTCCGGTCCAAGAAACAGCCCCAACCCAAGGAACTACTACCGGTGCTNGACGGAAGGGGTGCAACGTGAAGAAGAGGGTGGAACGGGGACAAGGACGACCCGAGCNACGTGGTGACGACGTACGAGGGGACGCACAACCACGTGAGCCCCAGCACGGTGTACTACGCCAGCCAGGACACCGCCTCCGGCCGCTTCTTCGTCGCCGGCACGCAGCCGCCAGGTTCTCTCAATTAACCGCGCGCGTACGGTTAATTTGATCGATCGGGTCANCCATGGGACTTTTCCAATGCTAGCTAGCTAATAGTGTAGGTGTTCTGGGCCGGATTNTTGATCGAGATAGCAGCCTCTTGATTGAGATGCCCAGATGGGTCATTTTGGATGT AGCTGGATCTTT TTTTCCCCTTTTCTTCTCTCGATCTCTGTCCCGTCCTT TTTGCCTGTTTCGATCATTGGAAGGCCGGGCC GGCCTGGCTGGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAGGATCCTCCCAACTATCCCCCTTGAGCCTAGGTAATATAGCCATGGGAAATGTAACATATATATACTGTTTAACCGTGC AATAAAAATGTACAGAGCTTGAAAAAAAAAAAAA                               ]
[+] EMBL BI797789             [                                                                                                                                                                                                                                                                                                      TTTTCCAATGCTAGCTAGCTAATAGTGTAGGTGTTCTGGGCCGGATTCTTGATCGAGATAGCAGCCTCTTGATTGAGATGCCCAGATGGGTCATTTTGGATGTGAGCTGGATCTTTGTTTTCCCCTTTTCTTCTCTCGATCTCTGTCCCGTCCTTGTTTGCCTGTTTCGATCATTGGAAGGCCGGGCCAGGCCTGGCTGGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAGGATCCTCCCAACTATCCCCCTTGAGCCTAGGTAATATAGCCATGGGAAATGTAACATATATATACTGTTTAACCGTCCAAATAAAAATGTACAGAGCTTGAAAA                                        ]
[+] EMBL AW070032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAGGATCCTCCCAACTATCCCCCTTGAGCCTAGGTAATATAGCCATGGGAAATGTAACATATATATACTGTTTAACCGTGC AATAAAAATGTACAGAGCTTGAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAGACCTCGGC]


>consensus_11533#2 AAGTACGGCAAGAAAGTCCGGTCCAAGAAACAGCCCCAACCCAAGGAACTACTACCGGTG CTNGACGGAAGGGGTGCAACGTGAAGAAGAGGGTGGAACGGGGACAAGGACGACCCGAGC NACGTGGTGACGACGTACGAGGGGACGCACAACCACGTGAGCCCCAGCACGGTGTACTAC GCCAGCCAGGACACCGCCTCCGGCCGCTTCTTCGTCGCCGGCACGCAGCCGCCAGGTTCT CTCAATTAACCGCGCGCGTACGGTTAATTTGATCGATCGGGTCANCCATGGGACTTTTCC AATGCTAGCTAGCTAATAGTGTAGGTGTTCTGGGCCGGATTNTTGATCGAGATAGCAGCC TCTTGATTGAGATGCCCAGATGGGTCATTTTGGATGTAGCTGGATCTTTTTTTCCCCTTT TCTTCTCTCGATCTCTGTCCCGTCCTTTTTGCCTGTTTCGATCATTGGAAGGCCGGGCCG GCCTGGCTGGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTG AGGATCCTCCCAACTATCCCCCTTGAGCCTAGGTAATATAGCCATGGGAAATGTAACATA TATATACTGTTTAACCGTGCAATAAAAATGTACAGAGCTTGAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAGACCTCGGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_11533#0      GGCCAACCCACATGCACGTGTACCGATGTACATGGCGGCGGCGGCTGCGGGAGCAAGCAC 60
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      ------------------------------------------------------------
                                                                                   

consensus_11533#0      ACCCTTCAATTTTTGCCGCCACGGCTCGCACGCCGAGTACGACGCCGTCTTCAGCGGCAG 120
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      ------------------------------------------------------------
                                                                                   

consensus_11533#0      CTGGATGGCGCGCCGCCCCTCCGCGGCGCCGCACGGTGGCGGCGCCTCCGGCTCCGGCTC 180
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      ------------------------------------------------CCATCACAGAAG 12
                                                                                   

consensus_11533#0      CGGCAGCGGCTACGGCGCCGCCTCGTACGTTGCTCCCACCTTCGGCGCGGCGTTTAGGCA 240
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      AAAATTCACCGGTGAAAAGGTTCAGCACTGTGCAATGGCGGCTTCCGTAGGACTGAACCC 72
                                                                                   

consensus_11533#0      GCAGCATCTCGACCTCCTCGACTACCTGTCCGACGATCAGGGCGTTCCGGCGCCACCACC 300
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      TGAAGCTTTCTTCTTCAGCAACTCCTACTCCTACTCCTCA-----TCCCCTTTCATGGCC 127
                                                                                   

consensus_11533#0      AGCGGCTGTGCCCAGCGCGTCGTACGTGACGCCGGCGCCGGCGATGGCCCCCGCTGAACC 360
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      AGCTACACGCCGGAGTTCTCGGCCGCCGCTATCGACGCCAACTTATTCTCCGGCGAGCTC 187
                                                                                   

consensus_11533#0      GGTCGTGCCGGATGCTGTT--GCCGCCGCCGGCGGCTATCCGAGGAGCGTGGCTGCGGCG 418
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      GATTTCGACTGCTCTCTCCCAGCTCCGGCCCAGGAGTACCCGGAAAATGAAAACACTATG 247
                                                                                   

consensus_11533#0      GCGGCGGCCGTGGCCGGCGAGGGAAGAGATCGGACGACGACGGACAAGATCGCATTCCGG 478
consensus_11533#2      ------------------------------------------------------------
consensus_11533#1      ATGAGGTACGAGAGCGAGGAGAAGATGAGGGCGAGGGTGAACGGGAGGATCGGGTTCAGG 307
                                                                                   

consensus_11533#0      ACGAGGTCGGACGATGAGATACTCGACGACGGGTATAAGTGGAGGAAGTACGGGAA-AAA 537
consensus_11533#2      ---------------------------------------------AAGTACGGCAAGAAA 15
consensus_11533#1      ACGAGGTCGGAGGTGGAGATTCTTGATGATGGCTTCAAGTGGAGGAAGTACGGCAAGAAA 367
                                                                    ******** ** ***

consensus_11533#0      GTCCGTT---AAGAACAGCCCTAATCCGAGGAACTACTACCGGTGCTCGACGGA-GGGGT 593
consensus_11533#2      GTCCGGTCCAAGAAACAGCCCCAACCCAAGGAACTACTACCGGTGCTNGACGGAAGGGGT 75
consensus_11533#1      G-CTGTC---AAGAACAGCCCAAATCCAAGAAACTACTACCGGTGCTCGACGGA-GGGGT 422
                       * * *     *  ******** ** ** ** **************** ****** *****

consensus_11533#0      GCAACGTGAAGAAGAGGGTGGAG-AGAGACAAGAACGACCCGCGGTACGTGGTGACGATG 652
consensus_11533#2      GCAACGTGAAGAAGAGGGTGGAACGGGGACAAGGACGACCCGAGCNACGTGGTGACGACG 135
consensus_11533#1      GCAACGTGAAGAAGCGAGTGGAG-AGAGACCGGGAGGACCACCGCTACGTCATCACCACC 481
                       ************** * *****   * ***  * * ****   *  ****  * ** *  

consensus_11533#0      TACGAGGGGATCCACAACCACGTGTGCCCCGGCACTGTC--TACTACGCCGC-GCAGGAC 709
consensus_11533#2      TACGAGGGGACGCACAACCACGTGAGCCCCAGCACGGTG--TACTACGCCAG-CCAGGAC 192
consensus_11533#1      TACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCCGCGGCGCTGCAGTACGCC 541
                       ***** **    ********** * *****  * * *      *  ***      * * *

consensus_11533#0      GCCGCCTCCGGCCGCTTTTTCGTCGCCGGGAT-CAGTCAC-CCAGACCTT----AATTAA 763
consensus_11533#2      ACCGCCTCCGGCCGCTTCTTCGTCGCCGGCACGCAGCCGC-CAGGTTCTCT--CAATTAA 249
consensus_11533#1      GCCGCCGCCGGCGACTACTACAGC-CCGCCGCTCAGCAGCGCCGGCTCGCCGCCGGCCGC 600
                        ***** *****  **  * *  * ***     ***   * *  *  *            

consensus_11533#0      --GCTAG-GATATGCTTTGCCGGCCCAGCTGTGGCTTAGCTTGA---TGTGCAGCTCTAG 817
consensus_11533#2      CCGCGCG-CGTACGGTTAATTTGATCGATCGGGTCANCCATGGGACTTTTCCAATGCTAG 308
consensus_11533#1      CTATTCGGCAGGCGGCTCGCT-GCTCTTCTGAGGCTGA---TGAGTTTGTCTAGTACTAG 656
                             *      *  *     *  *    * * *       *    * *  *   ****

consensus_11533#0      TTA-----TTGTATGGGCTGTACGGTTCAGTTATTTGAAGCGGGTTATACTTATATGTTG 872
consensus_11533#2      CTAGCTAATAGTGTAGGTGTTCTGGGCCGGATTNTTGATCGAGATAGCAGCCTCTTGATT 368
consensus_11533#1      ACA------CGCCCGGGAGCTCTAGCTAGGATAGA-AAACTAGAGAAAGTTTAATTATAC 709
                         *       *    **   *   *    * *     *    *            *    

consensus_11533#0      TTAATGTTTGCCTAC-TGATTTTAATT--AATTTCTTAGAGTTAGACTCAATTTGGCGGA 929
consensus_11533#2      GAGATGCCCAGATGGGTCATTTTGGATGTAGCTGGATCTTTTTTTCCCCTTTTCTTCTCT 428
consensus_11533#1      CTGAATTTTAATTAA-TCACCTCACAA--AACTCTGATGTATCATATTATATCGTGATAG 766
                          *        *   * *  *       *  *        *         *        

consensus_11533#0      GGGATTCCCTTCAAAAAAAGAAATCCCTTCAAAAAATTTGGCGGAGGGAC--GACTGAT- 986
consensus_11533#2      CGATCTCTGTCCCGTCCTTTTTGCCTGTTTCGATCATTGGAAGGCCGGGCCGGCCTGGCT 488
consensus_11533#1      TGACTGCT-------------TGTTAATTTAAAAAAGCCGATCGATGTGA-----TCTTC 808
                        *    *                    **   *  *   *   *  *        *    

consensus_11533#0      -ATATATGGTGACATTAGCTAGGTT---TGCTCACTTTTGGCAAAAATAACAAGTTTCCT 1042
consensus_11533#2      GGTTTGCAGCGATAGTGATCAAATGCTGTGCTGCTGTGTTTCTGTGCTCTTGAGGATCCT 548
consensus_11533#1      GGTTCGT-GTGTTCATGACTTAACG---TCTTCATGTATGTTTTTAGCAGAAAGATCAAC 864
                         *     * *    *            *  *    * *             **      

consensus_11533#0      TTCGTGCCACTCTCCGTC--CCTAGGTCAGTGTTTGGCAAAACGCCCAAAAAAATGTCCG 1100
consensus_11533#2      CCCA-ACTATCCCCCTTGAGCCTAGGTAA---TATAGCCATGGGAAATGTAACATATATA 604
consensus_11533#1      TGCTGGTTTTAATATACAATTTTTAGGAATTTTACCCCGTAAGGTCGAGTACCATTACTT 924
                         *                   *  *  *   *    *     *      *  **     

consensus_11533#0      TGTTGCCAATTAATTTGTCGATTGTGTACTTCAATTTCAAGCCAAATTTCGGCAAAGCTA 1160
consensus_11533#2      TACTGTTTAACCGTGCAATAAAAATGTACAGAGCTTGAAAAAAAAAAAAAAAAAAAAAAA 664
consensus_11533#1      CTTTTNNNANNNNNNNNNNNNNANAAAANCTTNNCCCTTTGC------------------ 966
                          *    *                  *                                

consensus_11533#0      GTACTTTGTGTGTT------- 1174
consensus_11533#2      AAAAAAAAAAAAGACCTCGGC 685
consensus_11533#1      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)