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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11542#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1023 fasta sequence
[ACGCACGCACCGCACAGACGCAAGCTCACCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGCCGGCCCG-AGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCCCTCCCCGTGGTGCGGTTCGACGAGCTGGTGGCGTCCGCCCCGGCGGCGGTGTGCGGTGGCGGCGACTGCG-CGG-TCTGCCT-CAGCGGCATCTGCGGGCGCGACGAGGTGCGGCGGCTGTCCAACTGCCGCCACGTTTTCCACCGCGGCTGCCTCGACCGCTGGATGGCCCACGAGCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGCTCTTGCCCGCCGCCTCCGGCCTGCCTGACCCCTCCGACTACGACCTCTCGTACTACCCATCCCCGCTGCCGCTGGCGCCCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAATCTCCCCACGCTATTCAAAAAA]
[+] EMBL AK099314 [ACGCACGCACCGCACAGACGCAAGCTCACCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGCCGGCCCG AGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCCCTCCCCGTGGTGCGGTTCGACGAGCTGGTGGCGTCCGCCCCGGCGGCGGTGTGCGGTGGCGGCGACTGCG CGG TCTGCCT CAGCGGCATCTGCGGGCGCGACGAGGTGCGGCGGCTGTCCAACTGCCGCCACGTTTTCCACCGCGGCTGCCTCGACCGCTGGATGGCCCACGAGCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGCTCTTGCCCGCCGCCTCCGGCCTGCCTGACCCCTCCGACTACGACCTCTCGTACTACCCATCCCCGCTGCCGCTGGCGCCCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAATCTCCCCACGCTA ]
[+] EMBL AK071853 [ACGCACGCACCGCACAGACGCAAGCTCACCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGCCGGCCCG AGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCCCTCCCCGTGGTGCGGTTCGACGAGCTGGTGGCGTCCGCCCCGGCGGCGGTGTGCGGTGGCGGCGACTGCG CGG TCTGCCT CAGCGGCATCTGCGGGCGCGACGAGGTGCGGCGGCTGTCCAACTGCCGCCACGTTTTCCACCGCGGCTGCCTCGACCGCTGGATGGCCCACGAGCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGCTCTTGCCCGCCGCCTCCGGCCTGCCTGACCCCTCCGACTACGACCTCTCGTACTACCCATCCCCGCTGCCGCTGGCGCCCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAATCTCCCCACGCTA ]
[+] EMBL AK104122 [ GCACCGCACAGACGCAAGCTCACCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGCCGGCCCG AGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCCCTCCCCGTGGTGCGGTTCGACGAGCTGGTGGCGTCCGCCCCGGCGGCGGTGTGCGGTGGCGGCGACTGCG CGG TCTGCCT CAGCGGCATCTGCGGGCGCGACGAGGTGCGGCGGCTGTCCAACTGCCGCCACGTTTTCCACCGCGGCTGCCTCGACCGCTGGATGGCCCACGAGCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGCTCTTGCCCGCCGCCTCCGGCCTGCCTGACCCCTCCGACTACGACCTCTCGTACTACCCATCCCCGCTGCCGCTGGCGCCCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAATCTCCC ]
[+] EMBL AU068963 [ ACCTNAGCTCNGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCA TCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGCCGGCCCG AATTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCNCTCCCCGTGGTGCGGTTCGACGAGCTGGTGGAGTCCGCCCCGGCGACGGTGTGCNGTGGCGGCGACTGCGACGGTTCTGACTACANCGG ]
[+] EMBL C26599 [ ACCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGCACCGNCGGCCCG AGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGNCCTCCCCG ]
[+] EMBL OSS15722A [ CCTCAGCTCAGCTCACAATTCGGCTGTATCCAAGATCGCCATGGGCTTCCCGGTGGGCTACTCGGAGCTGCTCCTCCCGAGGCTGCTGCTCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAGTCGGCCTCGGCGACCTCATCGACAACCCGACCGGCCTGGCGGCCACGGAGCAGGACCTGATGCTGCAGGGGCGCGGCGNCGNGATGGCGGAGGGTTGGGCGTCGTNGTCGTCGCTCCAGCACCGTCGGCCCGAAGTTCAGGGCGATTNCGCCGATGGACATNGAGGAGGgc ]
[+] EMBL AU181425 [ CCGCTCATCCCCGACGAGNTCTTGCCCGCCGCCTCCGGCCTGCCTGACCCCTCCGACTACGACCTCTGGTACTACCCATCCCCGCTGCCGCTGGCGCCCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGTGAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTCAACTACGGCACACGGGCACATAGGCGTCCTGATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAaaaa ]
[+] EMBL AU162181 [ GATTTGTACATAGGCGCCAAGGAGAACTCCCCCCAAAAAAACACAAGTAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCCAAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGCAGATTACTAGTAGTATATTAAATTTGTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAATCTCCCCACGCTATTCAAAAAA]
consensusID : consensus_11542#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 972 fasta sequence
[GCGGGAGCACCTCTCCCGACGAGCCTTCCCTTCTCCTCCTCGCCTTCGCGTCAGCCCGGCATGGGGTTCCCGGTCTGCTGCTACTCCGAGCTGCTGCTCCCCAAGCAGCTGCTCCACCTCCTCCTGCTGCTCGGCTACATCCGCCGCTTCCTCCTCTGGGCGTTCCACGCCGTCGGCCTCGGGGACCTGCTGGATCTCGGGGACGAGCAGCAGGCGGTGCTGCAGGACCACGCGCGCGAGCACCGCGCGCCGGCGCAGGCGCTGCCGCCACAGCAGCAGCACCGCCGCGCCGAGTTCCGGACGGTGCCGGCGATGGTCATCGAGGAGGTTCTGCCGGTGGTGCGGTTCGACGAGCTGGTGGCCGCGGCCCCGGCGGTTTGCGGCGGCGGGGACTGCGCGGTGTGCCTCAGCGGCATCGGCGGCGGCGACGAGGTGCGCAGGCTCAGCAATTGCCGCCACGTGTTCCACCGGGGCTGCCTGGACCGCTGGATGGAGCACGACGACCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGATGGCCAGCGCGCTCTGGGCCGCCGCCGGCGTGCCCGACGCCTCCGACTTCGACTTCTCCTACTTCGGCGCGCCCCTCACGCCGATGCCCACGCCGACTCTGCTACGGCCGCACGAGCTGCTGCTCACTGGCCTTGGCGGCTACCAGTAACCAGTGAACCGCCGCTGTTGGTTCACGGAGTTGGCAATATCCACCTACTGCACAGCAGGGCACCGGCGACCCGGAATGCGCAGTTTTTACAACGACTGAATTGGTCGTCGTGTTCGGGGAAGACCAAGAACAGGAGGCGCCTTCAACTGTACATAGGCAAAAATGAGTAAAGCAAACCCCCCGAAAAAGGCTAGATGATTAGTAGATTTTTATTTTTGTTTTTGTTTTTGTACAGAAGATTCCATCTTCCAGGTTTGAGAAGTAGTGAATCTT]
[+] EMBL AK100603 [GCGGGAGCACCTCTCCCGACGAGCCTTCCCTTCTCCTCCTCGCCTTCGCGTCAGCCCGGCATGGGGTTCCCGGTCTGCTGCTACTCCGAGCTGCTGCTCCCCAAGCAGCTGCTCCACCTCCTCCTGCTGCTCGGCTACATCCGCCGCTTCCTCCTCTGGGCGTTCCACGCCGTCGGCCTCGGGGACCTGCTGGATCTCGGGGACGAGCAGCAGGCGGTGCTGCAGGACCACGCGCGCGAGCACCGCGCGCCGGCGCAGGCGCTGCCGCCACAGCAGCAGCACCGCCGCGCCGAGTTCCGGACGGTGCCGGCGATGGTCATCGAGGAGGTTCTGCCGGTGGTGCGGTTCGACGAGCTGGTGGCCGCGGCCCCGGCGGTTTGCGGCGGCGGGGACTGCGCGGTGTGCCTCAGCGGCATCGGCGGCGGCGACGAGGTGCGCAGGCTCAGCAATTGCCGCCACGTGTTCCACCGGGGCTGCCTGGACCGCTGGATGGAGCACGACGACCAGCGCACCTGCCCGCTCTGCCGCGCGCCGCTCATCCCCGACGAGATGGCCAGCGCGCTCTGGGCCGCCGCCGGCGTGCCCGACGCCTCCGACTTCGACTTCTCCTACTTCGGCGCGCCCCTCACGCCGATGCCCACGCCGACTCTGCTACGGCCGCACGAGCTGCTGCTCACTGGCCTTGGCGGCTACCAGTAACCAGTGAACCGCCGCTGTTGGTTCACGGAGTTGGCAATATCCACCTACTGCACAGCAGGGCACCGGCGACCCGGAATGCGCAGTTTTTACAACGACTGAATTGGTCGTCGTGTTCGGGGAAGACCAAGAACAGGAGGCGCCTTCAACTGTACATAGGCAAAAATGAGTAAAGCAAACCCCCCGAAAAAGGCTAGATGATTAGTAGATTTTTATTTTTGTTTTTGTTTTTGTACAGAAGATTCCATCTTCCAGGTTTGAGAAGTAGTGAATCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11542#0 ACGCACGCACCGCACAGACGCAAGCTCACCTCAGCTCAGCTCACAATTCGGCTGTATCCA 60
consensus_11542#1 GCGGGAGCACCTCTCCCG-ACGAGCCTTCCCT---TCTCCTC----CTCGCCTTCGCGTC 52
** ***** * * * *** ** ** *** *** **
consensus_11542#0 AGATCGCCATGGGCTTCCCGGTGGGCT---ACTCGGAGCTGCTCCTCCCGAGGCTGCTGC 117
consensus_11542#1 AGCCCGGCATGGGGTTCCCGGTCTGCTGCTACTCCGAGCTGCTGCTCCCCAAGCAGCTGC 112
** ** ****** ******** *** **** ******** ***** * ** *****
consensus_11542#0 TCCAGGTGCTCCTCCTCCTCGGCCACCTCCATCGCTTTCTCCTCTGGGCCTTCCACGCAG 177
consensus_11542#1 TCCACCTCCTCCTGCTGCTCGGCTACATCCGCCGCTTCCTCCTCTGGGCGTTCCACGCCG 172
**** * ***** ** ****** ** *** ***** *********** ******** *
consensus_11542#0 TCGGCCTCGGCGACCTCATCGACAACCCGCCCGGCCTGGCGGCCACGGAGCAGGACCTGA 237
consensus_11542#1 TCGGCCTCGGGGACCTGCTGGATCTCGGGGACGAGCAGCAGGCGGTGCTGCAGGACC--A 230
********** ***** * ** * * ** * * *** * ******** *
consensus_11542#0 TGCTGCAGGGGCGCGGCGGCGGGATGGCGGAGGGTTGGGCGTCGTCGTCGGCGCTCCAGC 297
consensus_11542#1 CGC-GCGCGAGCACCGCG---------CGCCGGCGCAGGCGCTGCCGCCACAGCAGCAGC 280
** ** * ** * *** ** ** **** * ** * ** ****
consensus_11542#0 ACCGCCGGCCCGAGTTCAGGGCGATTCCGCCGATGGCCATCGAGGAGGCCCTCCCCGTGG 357
consensus_11542#1 ACCGCCGCGCCGAGTTCCGGACGGTGCCGGCGATGGTCATCGAGGAGGTTCTGCCGGTGG 340
******* ******** ** ** * *** ****** *********** ** ** ****
consensus_11542#0 TGCGGTTCGACGAGCTGGTGGCGTCCGCCCCGGCGGCGGTGTGCGGTGGCGGCGACTGCG 417
consensus_11542#1 TGCGGTTCGACGAGCTGGTGGCCGCGGCCCCGGCG---GTTTGCGGCGGCGGGGACTGCG 397
********************** * ********* ** ***** ***** *******
consensus_11542#0 CGGTCTGCCTCAGCGGCATCTGCGGGCGCGACGAGGTGCGGCGGCTGTCCAACTGCCGCC 477
consensus_11542#1 CGGTGTGCCTCAGCGGCATCGGCGGCGGCGACGAGGTGCGCAGGCTCAGCAATTGCCGCC 457
**** *************** **** ************* **** *** *******
consensus_11542#0 ACGTTTTCCACCGCGGCTGCCTCGACCGCTGGATGGCCCACGAG---CAGCGCACCTGCC 534
consensus_11542#1 ACGTGTTCCACCGGGGCTGCCTGGACCGCTGGATGGAGCACGACGACCAGCGCACCTGCC 517
**** ******** ******** ************* ***** *************
consensus_11542#0 CGCTCTGCCGCGCGCCGCTCATCCCCGACGAGCT------CTTGCCC---GCCGCCTCCG 585
consensus_11542#1 CGCTCTGCCGCGCGCCGCTCATCCCCGACGAGATGGCCAGCGCGCTCTGGGCCGCCGCCG 577
******************************** * * ** * ****** ***
consensus_11542#0 GCCTGCCTGACCCCTCCGACTACGACCTCTCGTACTACCCATCCCCGCTGCCGCTGGCGC 645
consensus_11542#1 GCGTGCCCGACGCCTCCGACTTCGACTTCTCCTACTTCGGCGCGCCCCTCACGCCGATGC 637
** **** *** ********* **** **** **** * * ** ** *** * **
consensus_11542#0 CCACCCCGACGCTGCTGCGACCACACGAGCTGCTGCTCAACGGCTTGGGCGGTTTCCAGT 705
consensus_11542#1 CCACGCCGACTCTGCTACGGCCGCACGAGCTGCTGCTCACTGGCCTTGGCGGCTACCAGT 697
**** ***** ***** ** ** **************** *** * ***** * *****
consensus_11542#0 GAGCCCGCCAATCCACCGCCCCGGTCAATTTCGTTGCAACCGGCATGACAGAGCTGCCTC 765
consensus_11542#1 AA-----CCAGTGAACCGCCGCTGTTGGTTCA--CGGAGTTGGCAATATCCACCTACTGC 750
* *** * ****** * ** ** * * **** * * ** * *
consensus_11542#0 AACTACGGCACACGGGCACATAGGCGTCC-TGATTTGTACATAGGCGCCAAGGAGAACTC 824
consensus_11542#1 A-CAGCAGGGCACCGGCGACCCGGAATGCGCAGTTTTTACAACGACTGAATTGGTCGTCG 809
* * * * *** *** ** * * *** **** * * * *
consensus_11542#0 CCCCCAAAAAAACACAAG--TAGGAATAGTTTGCTGCTATATAGGTCGATTCCACCTTCC 882
consensus_11542#1 TGTTCGGGGAAGACCAAGAACAGGAGGCGCCTTCAACTGTACA--TAGG----------C 857
* ** **** **** * * * ** ** * * * *
consensus_11542#0 AAGCCTGCGAAGTTGTGAATCCTTTTTTTTTTGC-AGATTACTAGTAGTATATTAAATTT 941
consensus_11542#1 AAAAATGAGTAAA-GCAAACCCCCCGAAAAAGGCTAGATGATTAGTAGATTTTTATTTTT 916
** ** * * * ** ** ** **** * ****** * *** ***
consensus_11542#0 GTTGAAGCAGAGCAGTGCCACAGTTTGGTGCTTGCTAATTTGGCAAGCCGTTTAATCCAA 1001
consensus_11542#1 GTTTTTGTTT--TTGTACAGAAGATTCCATCTTCCAGGTTTGAGAAGTAGTG-AATCTT- 972
*** * ** * ** ** *** * **** *** ** ****
consensus_11542#0 TCTCCCCACGCTATTCAAAAAA 1023
consensus_11542#1 ----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||