These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11546#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1210 fasta sequence [CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA-TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAACGCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTGGCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGGCGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCGGCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCGCTCACCGACGACAACATGTGCATGGAAGGGTTCAAGGGGGAGGCCGCCGGCGGCGGCGGCGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGAGAAAAGATCTCTTGATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTATCAGGCACAAATATCTGCAGAGTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACAATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCACAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATGCCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCTTTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATTGTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACATCAGGCCCCAGAGCGAG] [+] EMBL AK060639 [CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAACGCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTGGCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGGCGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCGGCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCGCTCACCGACGACAACATGTGCATGGAAGGGTTCAAGGGGGAGGCCGCCGGCGGCGGCGGCGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGAGAAAAGATCTCTTGATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTATCAGGCACAAATATCTGCAGAGTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACAATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCACAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATGCCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCTTTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATTGTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACATCAGGCCCCAGAGCGAG] [+] EMBL CF326372 [ CTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGGGCG ] [+] EMBL OSS4393A [ ACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCANNTCGCCCGGNGCCGTCGACGAGCGGCG CGCCGANATTCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGNTGGCGCCGTACTCGGCGGCGGTGGGGGCGAGCCCGGCGA ] [+] EMBL CF324867 [ AATTAAAAAGCTAGCTTAGCCATGGCACGTAGCCTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGCCCGGCGCCGTCGACGAGCGGCGCCGCCGCCA TCAGCAGCTTCGTGAGGTCGTGGTGCGCGGGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCC ] consensusID : consensus_11546#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [GACCCATGGCCCGCTTCCCTCGGCGAGGATCTTCAGTCGACGCGGCGCGGCGAGGAGGAAGTGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCCGGCGCTCACCGACGACACATGTGCATGGAAAGGGTTCAAGGGGGAGCCGCCAGGCGGCGGCGGCGCACAGGGAGGCCGTCCGCGCCACATCATGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTATTCCTCCAAAAAAAAAA] [+] EMBL BI809774 [GACCCATGGCCCGCTTCCCTCGGCGAGGATCTTCAGTCGACGCGGCGCGGCGAGGAGGAAGTGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCCGGCGCTCACCGACGACACATGTGCATGGAAAGGGTTCAAGGGGGAGCCGCCAGGCGGCGGCGGCGCACAGGGAGGCCGTCCGCGCCACATCATGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTATTCCTCCAAAAAAAAAA] consensusID : consensus_11546#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 332 fasta sequence [GACAACATGTGCATGGAAGGGTTCAAGGGGGATGTCNGCCGGCTNCGGCGG-CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAAAAAAAAAAAAAAAAATCTAGACGAGTTCT] [+] EMBL AU101998 [GACAACATGTGCATGGAAGGGTTCAAGGGGGATGTCNGCCGGCTNCGGCGG CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCNTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTANGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGGTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAt ] [+] EMBL CF195893 [ gaggccGCCGGCGGCGGCGG CGCCAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCCAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCNGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAAAAA ] [+] EMBL AU097346 [ GCGGTCGCCAGGGA GCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCGCTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACTCAGTGACATACATACCCATGTACGTACGTCGAGGTATGCATACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATACCATTTTGTTCTTCTGTGTAAAAAA ] [-] EMBL CF324997 [ CATGGGCTTCTTCCACCTCACAGCAAACGCGCTAGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAAATAACTCAGTGACATACATACCCATGTACGTACGTAGAGGTATGCAAACTGGATATATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGGGTGCATATATATACCATTTTGTTATTCTGTGTAAAAAAAAAAAAAAAAAAAAATCTAGACGAGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CACACGCACTCGTACACATATACTGCAAATTAAAAAGCTAGCTTAGCCATGGCACGTAGC 60 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CTCTCGTTGCTGCTACTCCTCGTCGCGTGCTTCCTCGTCGCCGGCGCCACCGCGGCTCGC 120 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CCGGCGCCGTCGACGAGCGGCGCCGCCGCCATCAGCAGCTTCGTGAGGTCGTGGTGCGCG 180 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GGGACGAAGTACCCCGCCCTGTGCGACGCGACGCTGGCGCCGTACTCGGCGGCGGTGGGG 240 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GCGAGCCCGGCGAAGCTGGCGTGGGCGGCGCTGACGGTCACCCTCAGCGCCGCCCGCAAC 300 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GCGACGTCGGCGGTGAGGTCCATCGCGGCGAGGTCGTCGTCGTCCCATCTCCCGCCCGTG 360 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GCGGCGGAGGCGGCCGGGGACTGCGCCAGCGAGCTCGGCGACGGCGTGGACGCGCTGCGG 420 consensus_11546#1 ----------GACCCATGGCCCGCTTCCC--TCGGCGAGGATCTTCAGTCGACGCGGC-- 46 consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CGGTGCGTGGACGCCATGGCCCGCGTCGCCGTCGGCGAGGAGTCGTCGTCGACGGCGGCG 480 consensus_11546#1 GCGGCGAGGAGGAAG-TGAGTTTCGAGGTGGACAACGTGCGGACGTGGGCCAGC-CGGCG 104 consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GCGGTGAGGAGGAAGGTGAGGTTCGAGGTGGACAACGTGCGGACGTGGGCCAGCGCGGCG 540 consensus_11546#1 CTCACCGACGACAC-ATGTGCATGGAAAGGGTTCAAGGGGGA-GCCGCCAGGCGGCGGCG 162 consensus_11546#2 ------GACAACA---TGTGCATGGAA-GGGTTCAAGGGGGATGTCNGCCGGCTNCGGCG 50 consensus_11546#0 CTCACCGACGACAACATGTGCATGGAA-GGGTTCAAGGGGGA-GGCCGCCGGCGGCGGCG 598 *** *** *********** ************** * * * *** ***** consensus_11546#1 GCGCACAGGGAGGCCGTCCGCG-CCACATCATGG-CCTCCTCCACCTCACCGCCAACGCG 220 consensus_11546#2 GCGC-CAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCG 109 consensus_11546#0 GCGC-CAGGGAGGCCGTCCGCGGCCACATCATGGGCCTCCTCCACCTCACCGCAAACGCG 657 **** ***************** *********** ****************** ****** consensus_11546#1 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 280 consensus_11546#2 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 169 consensus_11546#0 CTCGGCATCCTCAACGCCATGGCCAAGCAAATATAACTCCTCCCTAGCTAGTAGATAACT 717 ************************************************************ consensus_11546#1 CAGTGACATACATACCCATGTACGTACGTCGAG-GTATGCATA---------CTGGATAT 330 consensus_11546#2 CAGTGACATACATACCCATGTACGTACGTCGAG-GTATGCATA---------CTGGATAT 219 consensus_11546#0 CAGTGACATACATACCCATGTACGTACGTCGAGCACAAGCACAGCACAGCAACAGGGTGA 777 ********************************* * *** * * ** * consensus_11546#1 ATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATAC 390 consensus_11546#2 ATACGGATATACCGTATGTATACCGTCATATATACACATGTTTTGCGTGCATATATATAC 279 consensus_11546#0 GAAAAGATCTCTTG-ATGTGTTCAACGAAAAGAACAAAAACGTCTCATGTAT-CAGGCAC 835 * *** * * **** * * * * *** * * * ** ** * ** consensus_11546#1 CATTTTGTTCTTCTGTGTACATTCACATACACCATGGCATGATGAACGGGCATAATGTTA 450 consensus_11546#2 CATTTTGTTCTTCTGTGTAAAAAAAAAAAAAAAAAAAAATC-TAGACGAGTTCT------ 332 consensus_11546#0 AAATATCTGCAGA-GTGCATAAGCAAAGCACAGACTGAAGTTGATTTGGTTCTTAGGACA 894 * * * * * *** * * * * * * * consensus_11546#1 TTCCTCCAAAAAAAAAA------------------------------------------- 467 consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 ATTAATGTGAAGGGCTGAAGGCAATAATGCAAGTCGATCTACTGCTAAACCACAGGAGCA 954 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CAACACAATAGATAGACAAAGTTAGTTATGAGTCACAGTCAGAAATCAGAATAATGCATG 1014 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 CCAACATGCATGGTAGATTGGTAGTACACTCAAAGTTGTCCATGGAATTGTTGCCATCCT 1074 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 TTGTGTAATAGTGTAGGTAAGGCTTAAACTGATCATTTGTGTGCACACTGGTGCTGCATT 1134 consensus_11546#1 ------------------------------------------------------------ consensus_11546#2 ------------------------------------------------------------ consensus_11546#0 GTACTTGACTGTTAGTACTTAGTAGAGTCTATTACCTTCAGCTGTCTTTGCTGAGAACAT 1194 consensus_11546#1 ---------------- consensus_11546#2 ---------------- consensus_11546#0 CAGGCCCCAGAGCGAG 1210 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||